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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000710 ID=TCONS_00000710|Name=TCONS_00000710|organism=Clytia hemisphaerica|type=transcript|length=3916bp CACCAGCTGTGGAAAAAATATTCAGCCAATCAGCAGACGTTTGTAAAGTT GGTTGCAAAGTGTGGctcatccaaaaaaattaaaaaatattacaagaaaa tgagataaaaatCTATTTGGACATTTCGTTGGGTCATATTTTAATTCATG ATGTTTTCTGTGGTTTTTGTCTTCGTTCTGGGGACATGTATGTGTTCACC ACTACCGAAAGGATTCAAGGAAGCTGAATATGATATTCCTTTAGAGAAGT TTGCGGGACAGAAAAGTTATTTCATTAAGACAGAAGAAATGCCCGTTTAT GAGCAGCAATTTGCAAAGATTCGAGAGCTTGGTGAAGAAATCAATTGCAA GATTACTGGTAATTGTGCTGGTTCAAAGCGTGGTTTCATCTCTAAGAAAT CCATGTTTGATGATAGCATGCCAGGAGCTGGTGAGGCTCAATTTCAAGAC CAAATGGCCATGAATGCTGAAGCTATGGGTGGTGGCGGAAATCCAATGGG TGGTGAGGATGTAAGCGCCATGATGGGTGGAGGTGCTGGAAACCCAGGTG CCAATGCTTTCATACAGAAAGATGCAGCATCTTTTGGTCAACAACCACAA ATGGATCTTAAACTTTCAGACCAAGAGAAAGCAGCTGCAGGAGAAGGAAT GGGTCAATTTAGCATGGGAGGCGGTGGTCCCGGTGGAGCTGGTGGTCCTG GTGGAGCTGGTGGCCCTGGTGCAACAGGCGCTCCAGTGGAACCAGGAATG CATGGTGGGAATGACGAATTAATGAAACTCCGTGAGCAACAAAATTCTCA GGTCATTGATAGTGCGATCCAAGATAAATTGAGTTTCATGGATAAAGCTA ATGGTGGGCCAGCCATGCCACAAATGCCAGGAGCACCACAAATGCCAGGA GCAGCACCAGCAGCACCTCAAGTACCCGGTGTCATGGATCCATTGTCACA ATTATCTGCACCACAACCAACCTCCGATACTAAAGATGGTATGCCAGGAG GTGTCTCAGAAAATGATTTATTGAAAGCTGAAGACATTCAACCCAATGAG ATGAAAGGAATCAGCAGTTTTTTGAAAGATTCAAACCATGTTGAAAAGCC AGTCTCCACTGAAGCTGCATTTAATGATGCTCCATCAGAAGATGGTATGC CAGGAAAGACGAACATTGATTTCGGAGGATCGAATTCAGCCTCCATTGAT AACGAGGGAGGCGATACCAATTCTGATGGAGGACCACCTGGTCCACCTGG GCCTGAGCCAGCAAACGCTTCCCCTGTATCCCCAGGAGGACCCGAGGTTC CCACTTTGAACAATGTTGGTTTGGGAATGAATGCAGCAGAATTAGGACCA CCTGGAATGCCACCAAGTTTCAAATTTGTTCAAGATAACACACGACAAAT GATCCAACAAAATTCTGATTACAAAGTACCTCAATCAGCTTTATCAAACT TATGGAACTCATACATGCAATCAACACAAAGTTTGCTCGGAGAGAAAGAT CCATCAGCCAACAGCCGTCAATCAATTTGGAGGCCAACCATAAACAACAA ACTCCATCGTAGATCCAACAAAGGATCGAGAAGGCATCACTAATTCCAAA CAAAGACGACAAATCGAAACACAATAATAACAACCTAGTTTATGTACCTA CTTTTGTAATAAAAAACGTTTTACAACAAGTTAAAAAGACATTGAAAACA CTACCAAAACAATCTAAAGGAGATAAAAGAAACAGTAAAGCATCAAAAAT CCCTCCTGTTTATATCACTGAAAAGCAAGGCAAACGTTATTTAGTAATCA ACCCTCAGAATCCAGCACTAATCCAAGGATTTGCAAATGTTGATGATCAT TTCACTGGATTTCAGCTTCCTCTCGCGAATAGCTTCATCAATGGAGCTCC GGCAGCCCTCCCGTCCTTCGGCACCCGCGGTGTCTTCCCAGCGACAATGC AAGGTCCCTGGTCCTCTATGACGATGAGCGGAATGCCCGTATTCAGTGGT CAATCAACGGATGGTATATTTCACGGGTATATGGCTGTTCCGGTAGTTTC CCGAGAACCATTAGGACCAATGTCATCATTTGCGACACCACAAATTTCCT ATCCTCTTCCAACAGCGTACGCTTCGAGAACACCTTTCCCTGAAAACGGC CCTGGATATTTCCATGATAACGGCCCTCTTCCATTTCACAATGAAGGTTA CGTACACGAAGGGCCACTAGATCCAAGAAGGGAAGATCTTGGAGCATTCA ACCACCCAGTTATACATCAAGAATCAAACTTCGGAACACCAGTTCCTCCT AGTTTCCATCAATACGACGTACACCATGTGTCACCGGGAGAAGGCTACAG ACCTTTTCCAACATTGTATTGCGAACCATTCCATCCTAACCACCCCAGCA ACATTGCAGACGGATTTAACTCTATGTTCGCAAAAGGTTATGGTGAAGAC TATCACCCCGGCTTTCATGATCACCATCCAGCTATTTATGACGATTCAAC GCACTTTCCAGATGTGTCAAGATTAGGAAATCGGTTCGGGGATACAACGG CGTATTATGGTGATCCATATCATCACCCAAACCCGCCAAGCAATATTGCT GAGAGCTTCGACGCAATGTTGTCTAAAGGATACGGGTCTGACTACCATCA TGACTCGCCCACCTACCACGATTCAGCCTTCCCTGATACTTCAAGACTGT CAAATCCTCTCGGTGACCCAACCAATTATTATGGCGATTCAATGCACGGT CCAAACCATCCAAGCAACGTTGCAgatgatttcaatgatatgTTTGCAAA AGGTTATGGATCGGATCCAGGATATCACCACCAAGCTCTCCCTCCATCTG ATCATGATACAACCTCTTTCCCTGATACTTCGAAACTAGGCAATCCACTT GGTGATCCTACAAACTACTATGGCGATTCAGTCCACCACGGAAACCCTCA AAGTGACATAGCTGATAACTTCAATGCAATGTTTACAAAGGGTTACAGCG AAAGCCATAAAGAACCTGACCTTAAAACACATTCAACAGAGTTTGGTACA CCACTTTCACATCCAAACAATTATTACGGCGATGATTCGTCTCGCTCATC AACAGCAGAGGATTTCAACACAATGTTCAACAAAGGATATGGAGGCGATC ATTCTGATGACAGAGCCTCAAGAATCGACGAATCATCACcgaatcaattt tcaaaaatgtttaatgGTGATTTTGGACATCAGACAAACTTTGATAAATC AAAAGTGGAAAGGCCATCCAGTCAACCACACCCTTATGTGTTTACAAAAG AACATGTGGGATTTGGACCGATCACGGTTGAAGCTCATACAGCTTCTTTT AAAGGAAACGATCCAAAAGATGATGACAACTGAGGTGTTGTGTTGGAAGG GAAGGAGAAAGTTGTATATGTTGCATGTATTGGGTTGAAAGATTTGTCTG CAACGACGAGACTATCGGAGGTCAGTTGTGTTGTGTCAACGGAAGTACAG AGGatcaaaaaattcataaaacaaaGGACTCGAGAAGAAGTTAACTagat atattttttcttgaacTCCTAACTGAACGGACATTTTCAAACGTGGACAA TTTCGTAGTTTTCTCAATACCCGTTTAAACTTAGTGAGCAGGAAAGAGAG GAATTTTGCGTTATATTGACTTTTCGTCCCTTTAAGATCCTTTTTGTCTT GAAATATTCAGGTATGTAAATGGGTAAAACATTAAATAAATTGCGATTAA GTGCTTAACTGATACCCGTAAAATTTTCTAATCAAACGATGTAATTAAAA AGCATTTATTCCTTTAATTTGTATTGTTCAGCgctttattcatttttttt gtaaattttaattcTAGTGTATAGTTATATGACAAAAAaacttaaagaaa gaaattcaaatttcaa Run BLAST on NCBI transcript from alignment at sc0000005:750555..755879+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000710 ID=TCONS_00000710|Name=TCONS_00000710|organism=Clytia hemisphaerica|type=transcript|length=5325bp|location=Sequence derived from alignment at sc0000005:750555..755879+ (Clytia hemisphaerica) CACCAGCTGTGGAAAAAATATTCAGCCAATCAGCAGACGTTTGTAAAGTT
GGTTGCAAAGTGTGGctcatccaaaaaaattaaaaaatattacaagaaaa
tgagataaaaatCTATTTGGACATTTCGTTGGGTCATATTTTAATTCATG
ATGTTTTCTGTGGTTTTTGTCTTCGTTCTGGGGACATGTATGTGTTCACC
ACTACCGAAAGGATTCAAGGAAGCTGAATATGATATTCCTTTAGAGAAGT
TTGCGGGACAGAAAAGTTATTTCATTAAGACAGAAGAAATGCCCGTTTAT
GAGCAGCAATTTGCAAAGATTCGAGAGCTTGGTGAAGAAATCAATTGCAA
GATTACTGGTAATTGTGCTGGTTCAAAGCGTGGTTTCATCTCTAAGAAAT
CCATGTTTGATGATAGCATGCCAGGAGCTGGTGAGGCTCAATTTCAAGAC
CAAATGGCCATGAATGCTGAAGCTATGGGTGGTGGCGGAAATCCAATGGG
TGGTGAGGATGTAAGCGCCATGATGGGTGGAGGTGCTGGAAACCCAGGTG
CCAATGCTTTCATACAGAAAGATGCAGCATCTTTTGGTCAACAACCACAA
ATGGATCTTAAACTTTCAGACCAAGAGAAAGCAGCTGCAGGAGAAGGAAT
GGGTCAATTTAGCATGGGAGGCGGTGGTCCCGGTGGAGCTGGTGGTCCTG
GTGGAGCTGGTGGCCCTGGTGCAACAGGCGCTCCAGTGGAACCAGGAATG
CATGGTGGGAATGACGAATTAATGAAACTCCGTGAGCAACAAAATTCTCA
GGTCATTGATAGTGCGATCCAAGATAAATTGAGTTTCATGGATAAAGCTA
ATGGTGGGCCAGCCATGCCACAAATGCCAGGAGCACCACAAATGCCAGGA
GCAGCACCAGCAGCACCTCAAGTACCCGGTGTCATGGATCCATTGTCACA
ATTATCTGCACCACAACCAACCTCCGATACTAAAGGTAGATTTAGTAGGA
TCAATTGACATACAAATAGAACACAACTCATTCAATTATGAGTGAACAAG
TTAGAAGCATTCATAAAATATGagttttgttttatatttcGAACTTCTCT
TTTCATCTTTTCTTTGTAGATGGTATGCCAGGAGGTGTCTCAGAAAATGA
TTTATTGAAAGCTGAAGACATTCAACCCAATGAGATGAAAGGAATCAGCA
GTTTTTTGAAAGATTCAAACCATGTTGAAAAGCCAGTCTCCACTGAAGCT
GCATTTAATGATGGTGAGAAACGGATACTTCATTCAATTTCAGATTCATT
CAGATACATAGATTCATTAACTTTGCAAAAATTAGTCCAATTGAAGTATC
TTCTTTgtcaaattgtcccaaaaaaattagaaaataaatttgaattgtGT
TTGGTtatcttttatttgatttatagCTCCATCAGAAGATGGTATGCCAG
GAAAGACGAACATTGATTTCGGAGGATCGAATTCAGCCTCCATTGATAAC
GAGGGAGGCGATACCAATTCTGATGGAGGACCACCTGGTCCACCTGGGCC
TGAGCCAGCAAACGCTTCCCCTGTATCCCCAGGAGGACCCGAGGTATGTT
GAAACCAATTTCAAAAACAGTAAATAACTCAAAACATTGGAAAGCTATTT
TAAGGTTCGAAATCAAAATAACCCATTTTATTTTACCCTGATTGCTCCTT
AGCAATAACATTTGAGATTTCTCTTGGTATCTGTGGTGGAGTGCAAacta
tttttagcattcaaataGCTCAAGTAAATTAACAATACTTTATCACTTTA
ATGCAAGGGTTCTTACATGTTCATAAGAACGCTCCGACACTTGTGTTTCC
GATACCGTCGTCGAAAAGAATTTTCCTTGTATCTTCGTTACCAGTCTCTT
CAAAAGTTGACCGGCGTCAATAAAAGTTGATAGGTGTATTGATAAGATCC
AACCAGATCCGATCTTCAATctgagtttaaaaaaatttcttttgctcTTC
CTTCAACAGGTTCCCACTTTGAACAATGTTGGTTTGGGAATGAATGCAGC
AGAATTAGGACCACCTGGAATGCCACCAAGTTTCAAATTTGTTCAAGATA
ACACACGACAAATGATCCAACAAAATTCTGATTACAAAGTACCTCAATCA
GGTAAAATTTAGTCTGTATAAAATCAACAAATGTTTCCCAAACCTGATGT
CAATTAAGTTAAAATGCGTTAAAATTTCACCTAACTAGTAAATATCGCAA
CAAAGTCATTTGGTAAAAGGACAAGTACAATATTATAAGCACAAAATTAT
CAGACTTTTGTGATTGGAACCTTGCCATAAAACAATAAgctataaaaaac
aaatgatttcgCTACTTACGTTGGTCGGGAATTAAGTagtgttttttcta
aaatataagAATTCGAGGTTACAAAAATAATCCTATCGACTATTTCTCAT
TAATCTTTAGCTTTATCAAACTTATGGAACTCATACATGCAATCAACACA
AAGTTTGCTCGGAGAGAAAGATCCATCAGCCAACAGCCGTCAATCAATTT
GGAGGCCAACCATAAACAACAAACTCCATCGTAGATCCAACGTAGGTGAG
cttttctttaccacaaaaatcACACTGTCACAATTTCGTTTCACCATGCA
TGCATTCATCATTTTCTCGATTTTTGTTATTTGTCTTTTACCCTATTTAA
GATTCCCTTGTGCAGTGGATCccctataactcgaaccttttTTACTCGCG
TTTAAGAGCAAGTCCTAGCTCCTACTCCCAATACTTCATACAAAATTTGC
GTTCCCCGAGCATATCCGAGACAACAATGATCTATAACTCAAAACTCGCA
CAAAATCGTCTTTTAGAGGCTATCAAAATCTTAGGAAGACTTGCAATCGT
CACTTCTCTCTTCTCTTCTCATAGAAAGGATCGAGAAGGCATCACTAATT
CCAAACAAAGACGACAAATCGAAACACAATAATAACAACCTAGTTTATGT
ACCTACTTTTGTAATAAAAAACGTTTTACAACAAGTTAAAAAGACATTGA
AAACACTACCAAAACAATCTAAAGGAGATAAAAGAAACAGTAAAGCATCA
AAAATCCCTCCTGTTTATATCACTGAAAAGCAAGGCAAACGTTATTTAGT
AATCAACCCTCAGAATCCAGCACTAATCCAAGGATTTGCAAATGTTGATG
ATCATTTCACTGGATTTCAGCTTCCTCTCGCGAATAGCTTCATCAATGGA
GCTCCGGCAGCCCTCCCGTCCTTCGGCACCCGCGGTGTCTTCCCAGCGAC
AATGCAAGGTCCCTGGTCCTCTATGACGATGAGCGGAATGCCCGTATTCA
GTGGTCAATCAACGGATGGTATATTTCACGGGTATATGGCTGTTCCGGTA
GTTTCCCGAGAACCATTAGGACCAATGTCATCATTTGCGACACCACAAAT
TTCCTATCCTCTTCCAACAGCGTACGCTTCGAGAACACCTTTCCCTGAAA
ACGGCCCTGGATATTTCCATGATAACGGCCCTCTTCCATTTCACAATGAA
GGTTACGTANCTGGATATTTCCATGATAACGGACCTCTTCCATTTCACAA
TGAAGGTTACGTACACGAAGGGCCACTAGATCCAAGAAGGGAAGATCTTG
GAGCATTCAACCACCCAGTTATACATCAAGAATCAAACTTCGGAACACCA
GTTCCTCCTAGTTTCCATCAATACGACGTACACCATGTGTCACCGGGAGA
AGGCTACAGACCTTTTCCAACATTGTATTGCGAACCATTCCATCCTAACC
ACCCCAGCAACATTGCAGACGGATTTAACTCTATGTTCGCAAAAGGTTAT
GGTGAAGACTATCACCCCGGCTTTCATGATCACCATCCAGCTATTTATGA
CGATTCAACGCACTTTCCAGATGTGTCAAGATTAGGAAATCGGTTCGGGG
ATACAACGGCGTATTATGGTGATCCATATCATCACCCAAACCCGCCAAGC
AATATTGCTGAGAGCTTCGACGCAATGTTGTCTAAAGGATACGGGTCTGA
CTACCATCATGACTCGCCCACCTACCACGATTCAGCCTTCCCTGATACTT
CAAGACTGTCAAATCCTCTCGGTGACCCAACCAATTATTATGGCGATTCA
ATGCACGGTCCAAACCATCCAAGCAACGTTGCAgatgatttcaatgatat
gTTTGCAAAAGGTTATGGATCGGATCCAGGATATCACCACCAAGCTCTCC
CTCCATCTGATCATGATACAACCTCTTTCCCTGATACTTCGAAACTAGGC
AATCCACTTGGTGATCCTACAAACTACTATGGCGATTCAGTCCACCACGG
AAACCCTCAAAGTGACATAGCTGATAACTTCAATGCAATGTTTACAAAGG
GTTACAGCGAAAGCCATAAAGAACCTGACCTTAAAACACATTCAACAGAG
TTTGGTACACCACTTTCACATCCAAACAATTATTACGGCGATGATTCGTC
TCGCTCATCAACAGCAGAGGATTTCAACACAATGTTCAACAAAGGATATG
GAGGCGATCATTCTGATGACAGAGCCTCAAGAATCGACGAATCATCACcg
aatcaattttcaaaaatgtttaatgGTGATTTTGGACATCAGACAAACTT
TGATAAATCAAAAGTGGAAAGGCCATCCAGTCAACCACACCCTTATGTGT
TTACAAAAGAACATGTGGGATTTGGACCGATCACGGTTGAAGCTCATACA
GCTTCTTTTAAAGGAAACGATCCAAAAGATGATGACAACTGAGGTGTTGT
GTTGGAAGGGAAGGAGAAAGTTGTATATGTTGCATGTATTGGGTTGAAAG
ATTTGTCTGCAACGACGAGACTATCGGAGGTCAGTTGTGTTGTGTCAACG
GAAGTACAGAGGatcaaaaaattcataaaacaaaGGACTCGAGAAGAAGT
TAACTagatatattttttcttgaacTCCTAACTGAACGGACATTTTCAAA
CGTGGACAATTTCGTAGTTTTCTCAATACCCGTTTAAACTTAGTGAGCAG
GAAAGAGAGGAATTTTGCGTTATATTGACTTTTCGTCCCTTTAAGATCCT
TTTTGTCTTGAAATATTCAGGTATGTAAATGGGTAAAACATTAAATAAAT
TGCGATTAAGTGCTTAACTGATACCCGTAAAATTTTCTAATCAAACGATG
TAATTAAAAAGCATTTATTCCTTTAATTTGTATTGTTCAGCgctttattc
attttttttgtaaattttaattcTAGTGTATAGTTATATGACAAAAAaac
ttaaagaaagaaattcaaatttcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000710-exon-sc0000005-1491911889:750555..751539 | TCONS_00000710-exon-sc0000005-1491911889:750555..751539 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1510915933:750555..751539 | TCONS_00000710-exon-sc0000005-1510915933:750555..751539 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1575043694:750555..751539 | TCONS_00000710-exon-sc0000005-1575043694:750555..751539 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1491911889:751674..751817 | TCONS_00000710-exon-sc0000005-1491911889:751674..751817 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1510915933:751674..751817 | TCONS_00000710-exon-sc0000005-1510915933:751674..751817 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1575043694:751674..751817 | TCONS_00000710-exon-sc0000005-1575043694:751674..751817 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1491911889:751981..752147 | TCONS_00000710-exon-sc0000005-1491911889:751981..752147 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1510915933:751981..752147 | TCONS_00000710-exon-sc0000005-1510915933:751981..752147 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1575043694:751981..752147 | TCONS_00000710-exon-sc0000005-1575043694:751981..752147 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1491911889:752564..752705 | TCONS_00000710-exon-sc0000005-1491911889:752564..752705 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1510915933:752564..752705 | TCONS_00000710-exon-sc0000005-1510915933:752564..752705 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1575043694:752564..752705 | TCONS_00000710-exon-sc0000005-1575043694:752564..752705 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1491911889:753015..753145 | TCONS_00000710-exon-sc0000005-1491911889:753015..753145 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1510915933:753015..753145 | TCONS_00000710-exon-sc0000005-1510915933:753015..753145 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1575043694:753015..753145 | TCONS_00000710-exon-sc0000005-1575043694:753015..753145 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1491911889:753479..754105 | TCONS_00000710-exon-sc0000005-1491911889:753479..754105 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1510915933:753479..754105 | TCONS_00000710-exon-sc0000005-1510915933:753479..754105 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1575043694:753479..754105 | TCONS_00000710-exon-sc0000005-1575043694:753479..754105 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1491911889:754160..755879 | TCONS_00000710-exon-sc0000005-1491911889:754160..755879 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1510915933:754160..755879 | TCONS_00000710-exon-sc0000005-1510915933:754160..755879 | Clytia hemisphaerica | exon |
TCONS_00000710-exon-sc0000005-1575043694:754160..755879 | TCONS_00000710-exon-sc0000005-1575043694:754160..755879 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000005 | supercontig | sc0000005:750555..755879 + |
Blast
The following BLAST results are available for this feature:
|