TCONS_00000707 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000707
Unique NameTCONS_00000707
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1104

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000707 ID=TCONS_00000707|Name=TCONS_00000707|organism=Clytia hemisphaerica|type=transcript|length=1104bp
AAAGGTTGTTTTAAAAACGCCAATCCTGTGTAAATGCATCCACCGCTTCC
GTCCCAGGAACGTAGAATTTCGAGTTCAATCGCTCACATTTAGTGTTATT
ATAACCAGCAAATCTATCAATATTCAGGGGACCCCATAAACCATCTATAA
GTTCAAAGAATTCGTCTGTGATCTTCCAATCATCGATGTCTACAAACTAG
AAATGTAGTCAGCAGAGGCATTGAAACGTCTAGATATCCAGCTTACTTCT
AAGTCTATACTGAAAAGCCTTGATAGATCTTTAATATTTATAGCTAGAGA
CTGTAAGTCGGATTTGTTACTACCACTCGAGCAAATATATTTTGCTGCCA
TATTATCGGTTTGCCAAGAAATAGACTTCCCTGATATTTTAGGTGCAAAA
GATTGAAGACTAAATAGAATAGCTTCACGCCAAGTCGAGTTTTTAGATAC
TTCTCCTTCGCCAAACATACGAAAACATTCTGTCTTAAAAGTTTCGTAAA
AAGGGCTGGGGCCCTAGATAACCCAAATGGTAACACTGTAAATACAAAAA
ATCTTTGCTTCTTTTCCAGTTCCCAAGAAAATCCCAAGAAAATTATATCG
ACATGATGATAGTCCTTCCGTAAATCAAACTTGAAAAGACAACCATCAGG
ACGTACAAAATGTTGTAATTCGCGCCAGCCGTCAAACTTAATATGCTCCT
TGATCAAAAATCTATTGACATGTCGAAGGTCGAGAATAAGACGTTGCTTG
CCAGAAGGACGAGTATCTACCCCTAAAGGACTGACTACTGTCGGTCTAAA
CGGTATCTCAATAACTGATCCAGATTGAAGAAGTTCATTTATCGACGACG
TCACAAAAGCAGTGTTGTCGAAAGCAGAATGATTATTTGAACGAAAACTT
TCGATCAGAGAGGATAGAAAAGggGAAGCATTTAGGGACGAACGCTGata
acttgaaattttaaacaGTGGTAGGACACGATAATAGAAGGTGATTTGCA
AAATTTCGGTTCGGCCACCTGTTTGGTTGGTATTATACAGACCAGAACTT
AAAGAGACCAGAACTCACTCCTGATACCTGAATTCACAAATGAAAGTGAT
TCGG
Run BLAST on NCBI

transcript from alignment at sc0000005:629418..634713+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000707 ID=TCONS_00000707|Name=TCONS_00000707|organism=Clytia hemisphaerica|type=transcript|length=5296bp|location=Sequence derived from alignment at sc0000005:629418..634713+ (Clytia hemisphaerica)
AAAGGTTGTTTTAAAAACGCCAATCCTGTGTAAATGCATCCACCGCTTCC
GTCCCAGGAACGTAGAATTTCGAGTTCAATCGCTCACATTTAGTGTTATT
ATAACCAGCAAATCTATCAATATTCAGGGGACCCCATAAACCATCTATAA
GTTCAAAGAATTCGTCTGTGATCTTCCAATCATCGATGTCTACAAACTAG
AAATGTAGTCAGCAGAGGCATTGAAACGTCTAGATATCCAGCTTACTTCT
AAGTCTATACTGAAAAGCCTTGATAGATCTTTAATATTTATAGCTAGAGA
CTGTAAGTCGGATTTGTTACTACCACTCGAGCAAATATATTTTGCTGCCA
TATTATCGGTTTGCCAAGAAATAGACTTCCCTGATATTTTAGGTGCAAAA
GATTGAAGACTAAATAGAATAGCTTCACGCCAAGTCGAGTTTTTAGATAC
TTCTCCTTCGCCAAACATACGAAAACATTCTGTCTTAAAAGTTTCGTAAA
AAGGGCTGGGGCCCTAGATAACCCAAATGGTAACACTGTAAATACAAAAA
ATCTTTGCTTCTTTTCCAGTTCCCAAGAAAATCCCAAGAAAATTATATCG
ACATGATGATAGTCCTTCCGTAAATCAAACTTGAAAAGACAACCATCAGG
ACGTACAAAATGTTGTAATTCGCGCCAGCCGTCAAACTTAATATGCTCCT
TGATCAAAAATCTATTGACATGTCGAAGGTCGAGAATAAGACGTTGCTTG
CCAGAAGGACGAGTATCTACCCCTAAAGGACTGACTACTGTCGGTCTAAA
CGGTATCTCAATAACTGATCCAGATTGAAGAAGTTCATTTATCGACGACG
TCACAAAAGCAGTGTTGTCGAAAGCAGAATGATTATTTGAACGAAAACTT
TCGATCAGAGAGGATAGAAAAGGCAGCCAATTTGTAACCTTCTTTTATAA
CGCTAAGAATAAATTTATTAGCTCCGATCTGTTCCCAGAACAGATAATGT
TTCTTAAGCCTTCCTTTAACAGCCCCCGAATCTAATTCAGTGCTATCAAA
ATGCATCAAATgcatttcttaaaaattttagtttaaaattaaaagaaaaa
cacttATCTGTTTTTTTGGGTACTACTTTTCGGCTGATGGGCAGTCCCTC
TTCCAGTGTCCTGTTCCCGAACAGTTGAGGTAGACGTCGTTAGGGTCGAT
TCTTGTATCCTTCTTGATTGAAAGTCTGAGATCACCGTTGAGGGTACCGG
GGTTGCTTGGTGGGTTGATACTTTGGGAACTGGATAACACTCCGAACACC
CTGCGAGGGAGGTTCTTGTGGTGGTAGAGGATGAGGGGTTGGGcttcttt
ttcttgttttggtTTTGCTTCTGCATTCTTGTCATCTGAGCTGTCGTCTG
CCACGCTATCTGACTCGTATTCCCTAACAGTGGACCAGCCAGCTGGAGAC
TTATCAGCAATTTTAATCAGATAGTCAATATCCTTTATAATCTGTTTGGC
TAAAGTGGAAGATCTCTTCTCTGAGCCAGCCTCAATCAGCCCCAATAAAT
CCTCGAgtgttgtttggttttgttttgttttcctgtCTTACCCGTCATTC
TTTTTTTGCAGTCACTTTATAGTTTATTgcatatttgttttgtttttatt
ttagtcaaTGAGTTATATATTtcgattgtaaaaaaaaaaaaaaaaaaaaa
atcctcgANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCTCCAAAAATCGTTTCCAAC
TTCTTTCAAAGGGACAAATCGATTTCTGAGATCAATGACAACTTTCTTGA
ACGATTCCCAAAGATCTTCCACTGATTCATTCACGGATgcatttttgaaa
ccttctttCCATTCCCTCAACGTCGggtcatttttcattaatttgaaaTT
GGCCGAAGCATAGATGAACCTTGTTTGCGTAGGTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNAGTCGATGAGGGATGGGTCATCAGTTCCTCTA
CATCGAGTTGGTTCATTAACATGTTGACGGAGATACGCGTCTCTCAAAGC
ATTTAAGAATTTCTCTTCTTTGCTATCCTCCAGATGCGGGGTGGTCCAGT
TTTCCCAATTGATTGTGGGAAAGTTGAAATCACCTAACAAACATTTGTGC
GaatatttcttgtttaatgCAATGGACTTGATCAATAAGTTtaggttgtt
gttgttttcgttGGAGGACGTANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTCATTGAAAGTCACTGGAGGCTTGACATCGATTACCA
AGTGTTTAATGGATATATGGACAAATATGACAATGCCACGCCCTTGATCT
GTATCTAGGTTAATAACTTGGCTAGCGATTTTGTAGTCATCGAATTCATA
TTCATGTAGCTCCTTCAACGACTTGAATTTGAATTCTGATTCACGTCTCT
TTCTCTTCTCGCCAACCTCAAGATCCTTATGTAAGGACCTAAATTTCACG
TCAAAGTACTCTTTGAGCTCTTTCCTGTTCATCTAAAATCTAACATCACG
TGACTATGAAGCGCCAAAAGAACAATAATAAATTCATAGAATTTGAGGCA
GGGGTGTTTCTGGGGTGCTTATTTTATTTTAGACTTCactttgagacagg
ggtgatgCGGTAGATGACTTTTAAGGATAGGGAATATCATAACCgtactg
ggctcaacttcagtagcttCAAATTTAGTCGAAGGAATGCTCGATTGTAG
CATTTGAAGGCAAAACAAAGTTATTTTATAACTCAAAAATCCAACAAAGT
GAGGAACAGGAAATGAATTATGCAAAAGGATTAATTTAAGATATCCCAGT
GAAAAAAACTCTTCCctagaaaatcaaaatttttgaaaaatgaaaataac
tcccccaaatattcacccaaggaacaagtgtgcaaaatttctgCCAAATT
GGATCATATTTGAAATCTCCAGGCTCTAAAGTTTTcagacagacatacag
acagacacacagacagataCACACACACAGAACATGCATACATACAAACA
CACAGATACACATATAATACAGACATACAGTTGTTGAGAATACCAGATAG
GGGTGTGTTTTTTTCCCAATACACACTTTGTAGACTAAGATGCCTATTAG
CTCTTACCTGGTATGCGTAGTTTGCTTCTTAACCCTTCGAGCATTtacct
tttttttcttctagggGAAGCATTTAGGGACGAACGCTGataacttgaaa
ttttaaacaGTGGTAGGACACGATAATAGAAGGTGATTTGCAAAATTTCG
GTTCGGCCACCTGTTTGGTTGGTATTATACAGACCAGAACTTAAAGAGAC
CAGAACTCACTCCTGATACCTGAATTCACAAATGAAAGTGATTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000445XLOC_000445Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000707-exon-sc0000005-1491911889:629418..630339TCONS_00000707-exon-sc0000005-1491911889:629418..630339Clytia hemisphaericaexon
TCONS_00000707-exon-sc0000005-1510915933:629418..630339TCONS_00000707-exon-sc0000005-1510915933:629418..630339Clytia hemisphaericaexon
TCONS_00000707-exon-sc0000005-1575043694:629418..630339TCONS_00000707-exon-sc0000005-1575043694:629418..630339Clytia hemisphaericaexon
TCONS_00000707-exon-sc0000005-1491911889:634532..634713TCONS_00000707-exon-sc0000005-1491911889:634532..634713Clytia hemisphaericaexon
TCONS_00000707-exon-sc0000005-1510915933:634532..634713TCONS_00000707-exon-sc0000005-1510915933:634532..634713Clytia hemisphaericaexon
TCONS_00000707-exon-sc0000005-1575043694:634532..634713TCONS_00000707-exon-sc0000005-1575043694:634532..634713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:629418..634713 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.94729	1.69089	0.92254	0.806671	0	0.147126	0.517694	0.195346	0.412999	0.808561	0.0803211	0.0694252	0.0353713	0.109514	0.0249661	0.0483109	0.383819	0.377918	0.13867	0.111696	0.171928	0.0751076	0.710516	0.957091	0.285244	0.244853	0	0.0679435	0.402908	0.176408
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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