TCONS_00000706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000706
Unique NameTCONS_00000706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000706 ID=TCONS_00000706|Name=TCONS_00000706|organism=Clytia hemisphaerica|type=transcript|length=236bp
ACTCCTTTCACGGTTGTTGTTGACAACACACGCAACGCTATTGTTATTTC
GTGCAGAGGGACTTTGTCGTTACACGATATTCTAACGGATTTGGCAATTG
AAGAAGTAAGTTTACCAGGTTGCGATGAAAAATGGACTGCCCATAAGGGG
TTCTTCGAAGCAGCTACAGCAATCAAGGCAATCATTGATGAAAAAGATTT
GATCAAGCAAGCACAAAACTTTGACGTGgaTAAAGG
Run BLAST on NCBI

transcript from alignment at sc0000005:596714..598118+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000706 ID=TCONS_00000706|Name=TCONS_00000706|organism=Clytia hemisphaerica|type=transcript|length=1405bp|location=Sequence derived from alignment at sc0000005:596714..598118+ (Clytia hemisphaerica)
ACTCCTTTCACGGTTGTTGTTGACAACACACGCAACGCTATTGTTATTTC
GTGCAGAGGGACTTTGTCGTTACACGTAAGAATAAATTATTCTACTTTGa
ccaattttaaagaaaaagagcAGGGAATGTTATCTAGAATGGGTTCTCAT
CATTAGTTTACTCTCAATATAAGttctaccttcgggtagacagctagaga
aaaaaGAGCGCTCTGGTCGCCTTCAACTTCGCgaaaacttacttacttat
aagTTATACTTAAGAAAACTATCAATTGTTCCATTTAGCTTACCTTGAAA
ATTTCGACGAGGTCCATAACCATTTTTCACGGTTCTAATCTATAAATAAG
AGTCAACgcctaaaattttacaacaaacTTTTATAGCTATCTATTCCTTA
AGAAAGGTGCTCTGTATCAGAGTGCATCCCTCGTATGATAATATAACGAA
GTAACGATTTCTGTGTAGGTGAATTTTATATTTCCGTAGATATTGGGTGT
TTTTACAGAcgataagaaaaaataacttaattcaatttcaattttactaT
CAAAATCCTTTGCTCCCTTGGTTTAGGATATTCTAACGGATTTGGCAATT
GAAGAAGTAAGTTTACCAGGTTGCGATGAAAAATGGACTGCCCATAAGGT
AAGTTCGCCTCAAAGTGTATTTTTAGCAACTTTAGAATATAAACTTGAGC
AGGAATTGTGTTCTGGATAAATCTTCTTACTCGCATCTTCTTTGGTTCAA
AGTCGAGTTTTCCGATGCAATTTATCATTTCAGTGTCAATTTTCAGCTCA
TCTCTTAATTCTACTCATCGCTTAATTCTACTCTAATATAAAGTTCTAAG
TTTCAAGTAATTTTTATCACTGACTGACCTTTTCATCTATTTAGGGGTTC
TTCGAAGCAGCTACAGCAATCAAGGCAATCATTGATGAAAAAGATTTGAT
CAAGCAAGCACAAAACTTTGACGTGGTAGGTGAAAATTCTATGATTACGT
TATACAGACAAAATTATAGatataaaacgtcatattttaACGGCCCGTGG
ACGCAGCTATCTACTATAACATTTAGCGTTATTTAGAGAAGAAGCAGGAA
TTTATTAGGAAATGTGATCGGAAACTGACAGTAATGATAAGCTTTTGCAC
CTTGACGCTACTTCCATCCTCAATACTTTGTCTCTTTTCCGTGCATTATT
ATCGAAATATTTTGGATCAAAATGTTTTAACATTCCTTAAAGATATCTCT
GttgcaaaaaaagtaaacaatattAACCTCTTTAATGTATCCATATGTAT
CTATCGTATTAAAAAAGTCTTTCCTGTTTTTACGATTCGTTTTTTGATGT
TTAAAAATATCCGtatcggaatttttttttcactttttctttttaaggaT
AAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000444XLOC_000444Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000706-exon-sc0000005-1491911889:596714..596788TCONS_00000706-exon-sc0000005-1491911889:596714..596788Clytia hemisphaericaexon
TCONS_00000706-exon-sc0000005-1510915933:596714..596788TCONS_00000706-exon-sc0000005-1510915933:596714..596788Clytia hemisphaericaexon
TCONS_00000706-exon-sc0000005-1575043694:596714..596788TCONS_00000706-exon-sc0000005-1575043694:596714..596788Clytia hemisphaericaexon
TCONS_00000706-exon-sc0000005-1491911889:597290..597361TCONS_00000706-exon-sc0000005-1491911889:597290..597361Clytia hemisphaericaexon
TCONS_00000706-exon-sc0000005-1510915933:597290..597361TCONS_00000706-exon-sc0000005-1510915933:597290..597361Clytia hemisphaericaexon
TCONS_00000706-exon-sc0000005-1575043694:597290..597361TCONS_00000706-exon-sc0000005-1575043694:597290..597361Clytia hemisphaericaexon
TCONS_00000706-exon-sc0000005-1491911889:597608..597688TCONS_00000706-exon-sc0000005-1491911889:597608..597688Clytia hemisphaericaexon
TCONS_00000706-exon-sc0000005-1510915933:597608..597688TCONS_00000706-exon-sc0000005-1510915933:597608..597688Clytia hemisphaericaexon
TCONS_00000706-exon-sc0000005-1575043694:597608..597688TCONS_00000706-exon-sc0000005-1575043694:597608..597688Clytia hemisphaericaexon
TCONS_00000706-exon-sc0000005-1491911889:598111..598118TCONS_00000706-exon-sc0000005-1491911889:598111..598118Clytia hemisphaericaexon
TCONS_00000706-exon-sc0000005-1510915933:598111..598118TCONS_00000706-exon-sc0000005-1510915933:598111..598118Clytia hemisphaericaexon
TCONS_00000706-exon-sc0000005-1575043694:598111..598118TCONS_00000706-exon-sc0000005-1575043694:598111..598118Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:596714..598118 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	3.87892	0	0.667181	2.87164	6.52758	1.65589	1.55729	2.05247	2.05103	0.770839	5.20187	1.64924	0	0	2.84133	2.48436	0	0	2.35159	0	0.89267	0	0	4.707	5.69132	4.36593	2.11862	0	0.304078
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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