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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000697 ID=TCONS_00000697|Name=TCONS_00000697|organism=Clytia hemisphaerica|type=transcript|length=3776bpRun BLAST on NCBI protein sequence of TCONS_00000697-protein >TCONS_00000697-protein ID=TCONS_00000697-protein|Name=TCONS_00000697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1077bp RRGKCNLTSDFLNIYFVHVWPNFTIFLEYYTQKMADQVDEKTIQNTDEVSRun BLAST on NCBI transcript from alignment at sc0000005:447901..462969+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000697 ID=TCONS_00000697|Name=TCONS_00000697|organism=Clytia hemisphaerica|type=transcript|length=15069bp|location=Sequence derived from alignment at sc0000005:447901..462969+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000005:447901..462969+ >TCONS_00000697 ID=TCONS_00000697|Name=TCONS_00000697|organism=Clytia hemisphaerica|type=CDS|length=58212bp|location=Sequence derived from alignment at sc0000005:447901..462969+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000697 vs. Swiss-Prot (Human)
Match: SMCA5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1) HSP 1 Score: 1310.05 bits (3389), Expect = 0.000e+0 Identity = 679/937 (72.47%), Postives = 797/937 (85.06%), Query Frame = 1
Query: 304 YNEKMEHDRASRFSFLLKQTEIFSHFLNGAGXXXXXXXXXXXXXXDLPSSPPPKKGAK-------DHRHRRTXXXXXXXXXXXXXXSQAHVVQFTASPSYIKFGTMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLIGYMKHHRNNSGPHIVIVPKSTLANWMAEFARWCPTIRTVCLIGNQDQRSAIIRDTLLPGEWDVLVTSYEMCIREKTVLKKFAWRFLCIDEAHRIKNEKSLLSSIVREFKSSNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSDDFDAWFNAENLSEEDAIVKRLHAVLRPFLLRRLKSEVEKSLLPKKITNVYIGLSAMQRQWYTKLLMKDIDIVNGAGKTDRMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDVHLVDNCGKMSVLDKLLVRMKERGSRVLVFSQMTRMLDILEDYSMWRGFQYCRLDGQTPHEERTAQINDFNSPGSDKFVFFLSTRAGGLGINLATADVVVMFDNDWNPQVDLQAQDRAHRIGQTKQVQVFRFXXXXXXXXXXXXXAEMKLRLDRVVIQQGRLVEGQ-TKLQKDEVLNMIRHGADKVFASKDSTVTGEDIDLILERGAKKTEEIAKKMSDLGEGQLKNFTMDAPDSIYKFEGQDFRETHDKPGVSHWIEPPKRERKANYAVDTYFKELMRVNEXXXXXXXXXXXXXNVQDFQFFPPRLFELLDIEIYSYRKGIGYKVPRDYDMDDAXXXXXXXXXXXXIDNAEPLSEEEQTEKEQLLAQGFTNWNKRDFNQFIKACEKYGRDDLNSICKEVEGKSQAEVREYAGVFWERCNELTDIDKIMAQIERGEAKIQRRISIKRAMEAKMARYKSPFHQLRIQYGTNKGKNYTEEEDRFIVCMLHKLGFDRENVYEELRQSVRSAPQFRFDWFIKSRTAVELQRRCNTLITLI 3090
Y EKM+ DRA+RF +LLKQTE+F+HF+ A +K P SPLKMK P P KK K D+RHRRTE+EEDEELL +S + +F SPSY+K+G +RDYQ+RGLNW+ISLYENGINGILADEMGLGKTLQTISL+GYMKH+RN GPH+V+VPKSTL NWM+EF RW PT+R+VCLIG+++QR+A +RD LLPGEWDV VTSYEM I+EK+V KKF WR+L IDEAHRIKNEKS LS IVREFK++NRLLLTGTPLQNNLHELW+LLNFLLPDVFNS+DDFD+WF+ N + +V+RLH VLRPFLLRR+K++VEKSL PKK +Y+GLS MQR+WYT++LMKDIDI+N AGK D+MRLLNILMQLRKCCNHPYLFDGAEPGPPYTTD+HLV N GKM VLDKLL ++KE+GSRVL+FSQMTR+LDILEDY MWR ++YCRLDGQTPH+ER IN +N P S KFVF LSTRAGGLGINLATADVV+++D+DWNPQVDLQA DRAHRIGQTK V+VFRFIT+NT+EERI+ERAEMKLRLD +VIQQGRLV+ K+ KDE+L MIRHGA VFASK+S +T EDID ILERGAKKT E+ +K+S +GE L+NFTMD S+Y FEG+D+RE K + WIEPPKRERKANYAVD YF+E +RV+EPKAPKAPRPPKQPNVQDFQFFPPRLFELL+ EI YRK IGYKVPR+ ++ +A + QKEEQ KID AE L++EE EKE+LL QGFTNWNKRDFNQFIKA EK+GRDD+ +I +EVEGK+ EV EY+ VFWERCNEL DI+KIMAQIERGEA+IQRRISIK+A++ K+ RYK+PFHQLRI YGTNKGKNYTEEEDRF++CMLHKLGFD+ENVY+ELRQ +R++PQFRFDWF+KSRTA+ELQRRCNTLITLI
Sbjct: 80 YEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMK-----PGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQ-KIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKVPRNPELPNA--AQAQKEEQLKIDEAESLNDEELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLI 1008 The following BLAST results are available for this feature:
BLAST of TCONS_00000697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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