TCONS_00000696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000696
Unique NameTCONS_00000696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2936

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000696 ID=TCONS_00000696|Name=TCONS_00000696|organism=Clytia hemisphaerica|type=transcript|length=2936bp
GCGACgcagagaaaaaaataaataagctaaATAACTTTTTGTCTTGATGC
TACATTCTTTTTAATGATTGATTGCAGTTTGTGGCACGCACATGTACTGT
gatcaaataatattttttgaaaatatagatTTCGGTCAGAAATCAATTGG
TTAACAGAAATCAATTGGTCAACGAAGCACAAAAAAGATAAACGATGACG
AACCTTCTTCTTATTTTGGTCACTTTCATTTCCATGACAGTCTCAACACA
AGCTGCATTTTACGAGTGGGGTTCATGGTCAGCGTGTAATGCAGGATGTT
CTGGTGAACGAAGTCGCGTTTGTAGAAAAAGTACAATAGGTTTAAGTACA
AACCTTTGCAGTCCACCTGAAGGACTTGTCATTCAAAGATgcaatgaaga
tatttgtggcAAGGAAATTTCAACAACAGGTGATACGACACGAAGTATTG
CGGAGGTAACCAAAACTCCACCCACAACAACTGAAGACCCTCAAAGCACA
AAACATTGTTGCGGATGCAAGTTCAGTGAAACACATGGTCAATACAGAAC
ATATTTCACAACACATATGATGTGCACTTGGAATTTCGAAGCTAAAAAGG
ATCATCTTATTATAGTCACTGTAGAGAAATTAACTAACTTCAATTGGAAA
CAGGGCAGCGTGTTTGTGGCAAGCCCTGACAAAATGATTGGACAATTCCG
AGGAAAAGAAGGAGGCAACCAATATCAAAACATGCAACAGAAACGATTCA
CGTCAGTTGGCAATCGGATGAATTTGACTTTATTTAGCAGTTTACAATTC
CAGGATGTAGAAGTTCGATTCTCTTACGTCACATATCGAGATCCATCAAA
GCCGACAATAATCACACCAAAAGGTTCTGACGAAAAACCTGATAAGGGGT
CTGGTGAAGAGGGAGACGGGGAAAAGAAAAGTGGTGGCGGTGGAATAAAC
ATTCCATTGATTGCGAGTATAGTTGCGTGtgttttcatcatcatcattgc
aaGTTTATTCATCTTTTATCGGCGTACAAAATCAACAAATTCTCAAAACA
CTAAATCAAATTCTAATGAAGATGAAAAGGCTGGATTTTTTGGTTCCGGA
CAAAATAGACGTCTCACGTCACCGCGTAGAGATCGAACACCGATGCAGAG
CAAGATTCTAATGCCCGACAATAATGGTGGAGTACAATTAGTTGACAAAC
CAGAACACACAGATGGAGGTTACCTCAGTGGAGGAGAGTTATTTATACCC
AATCAGCAACCGACATATGTGACAGCTTTTCCACCGGCAACGGCAGCATA
CGTTGCAGGGCAACCTTACATCNTATACCCAATCAACAACCGACATACGT
GACAGCTTTTCCACCAGCAACGGCAGCATATGTTGCAGGGCAACCTTACA
TTAACTGGCCGCCGATGCCCGCATTTGCGGGACAACCTCATGTAGCCAAC
ATGGCAATGTACCCCTACAAACAATCAGTAGAACATATCAATCCAACTCA
AATGTATTATCCTAAAAGCGGAGGAGAAACATAAAGTACATATGTGAAAT
TATTGAAAGTGTTGTTTTCCTGGAGCACTGAGACTGTAGAGAAGTGGGGA
AGTGACTGCCCACATCAGCACTATGCAAAAGAACATTTCAATATAATTGA
ATAATCTTGTATTTATAATGTGATAACAGAGGAACATCTCATATCTTTAC
ATATTATAACTAAAATTATAATGACTAGtagttaaaaaaaacaatttatc
ataTGGAACAGTTATTTATACCTTAAGcaaagaaaatcttgaaaagtttt
tattttatcgaaTTCTGGATGAAAAGAAACCTGGTCTGAATCATTTATTC
GCAACGGACAAACGAGGTATTGTGTTCAAGGTTGgaggttttcaaaaata
aaaataaagattcaAAAGTTGCTTTTATTCATAACTGCTCAAAATCGAGG
ACATTCAAATTGtttgaaagtaaaaaatcaGCGAACAATAAAAGACCAAA
TATTGTACCTAGAAAATAGGAGAAAAGACTAAATTGCTAAATATAAGCTA
AAGAACCAATAGTATTAGAGTTAATGATATTTAAGTACATAGAGATGATG
TTTTAATGAGAATGTGCGTGAAGTCTAGCATTTTAGAGTACTTCAATCTA
ACGTCTgcttagcctatactagacgtcacagCTTTTTCTCTACAcagtaa
cgtctattccactttgcgactttttccaggttttcgggcgccaaacattc
gattttttgacgccACTTTAAAATCGCTCTAGCCTATCTCTATAccaaca
cgcgattttttgATCACTCTATTGTGGTCGTCTGGCACAGGCAAAAATCG
CTCCTGCAGTAGCGAAAATATGGAATTTGCGTCGAATCACTTAGaaggct
tctattttttgaaaatcatcaaagtggaactAACCAAGATacgggatgaa
aaatcccgATTTTTAGAGAGGTACTCGATATTGTCTGATATGAGTgtcaa
aaaattatgaaaaaacgaTGATGATATGGAAATAACAGGTAAAGTAAATA
TATATTCatggaagaaaaaatatttaaagaaacTGAAAGCTTAGTATGTA
CAAAATATATTTCCACACTTTCGGTTATTGAAAGAATAATTGCTAAAAAA
TATCAAGAGTTAAAAATAGCCGTACAAAGGGACCCTTCAAGATCTAGCTC
AGTCGGCCGATCACAAAACCGAGTTTTTTCGTACTTCGCGAAAAGGGCTA
CAACGCGATAACAAGCCGACCGGCTAAACTAGATCCTTTCTACGTCAAAA
GTTTATCCCCTGACTGTGAATATttacatgaaaaataaatacttaTCTGT
TTTGTTTTCAATGACACGCTTAAAATATTGCCGGAGGAAACTTTCTGGTT
GTTAGCGGCGTGTCGCACGAGGTTTCCGTTTAATCT
Run BLAST on NCBI

transcript from alignment at sc0000005:397988..403501+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000696 ID=TCONS_00000696|Name=TCONS_00000696|organism=Clytia hemisphaerica|type=transcript|length=5514bp|location=Sequence derived from alignment at sc0000005:397988..403501+ (Clytia hemisphaerica)
GCGACgcagagaaaaaaataaataagctaaATAACTTTTTGTCTTGATGC
TACATTCTTTTTAATGATTGATTGCAGTTTGTGGCACGCACATGTACTGT
gatcaaataatattttttgaaaatatagatTTCGGTCAGAAATCAATTGG
TTAACAGAAATCAATTGGTCAACGAAGCACAAAAAAGGTATATAAATTCT
TTTTCGATTCGGCGTTTGGGTAATCTTGATTAGGCTGTTGAACAATATTG
GTCAGATTCTATCAAGCAATGCGATAAAAACCTTGCAATCTGCAAAACAG
TTTTTGGGATTTCGTACAGGCTAGGGTAACAAAACATAGCCGAAAGCTTT
GATGCAAATCTTCTATGTTCACGCAAATATTTGGTTGAAAGTAACATCTA
CCgtcagatttttgaaaatgtgtcaTGTAGAACAAAAAAAAACCGTCATC
CTAAATGCGGCGGGAATTTTAAGTCATACCACTTTCTCATTTGCTTGGGA
ATATATCATCGGACGATCTAGCCTGTACGCGAAACCCCAAAAATCGAGTC
GATTCTTAAGATCGTAAAAAATTGAAACGATTTTCTCGTCATTTCCAAAA
AAGCCGAAAATTTGTTCGTTGTAAGAGGTTTTTAATTACCCGACCTTTTT
ATAATCAAAActgatagaaaaaaataatttttcatgaatcaatcaaaatt
tttgctacTAGCTACTAGGACTTTGCTCAAGACGGTGGGTGCTTgtgcct
taaatttcaaattctttctGACTGAACtgtaatttttcagttttttcata
TAAAGAGTTTTAGAGAAGAAAATGCTTATCATTGTCAGAAGGATGCTTGA
CGctttttcattaattatttCCCGAAAAGTTTTTGTGCAGCAAATTAATT
GTTTTTTAATCATActcttctttgttttttatagaCAATTACTGAGCTAT
TCAACTTTAGTTCCGCGAGCATTTTAAATCTTCATCCTTTTTGAAAGTGG
ATGCAAATTGAAAGAACAATACCGCTACGGGATCATATAATTGTGGGACA
CACACACCTAGATTAGTTTTCGAATTTcacgtttttttcttcttcttctt
tcataGATAAACGATGACGAACCTTCTTCTTATTTTGGTCACTTTCATTT
CCATGACAGTCTCAACACAAGGTATGTTTAGTTTTAAAATATCAATCAAT
TTTCGGGGACAGCTTAAATGATAGTTAATCCCTCAAGGGTTTGCCACCgg
aaaaaataaaatgcaaaGTATCCCGTCTACTtcatttatgaatttttgac
aTCACCTTGAAGGCGGGTGATGACTTCCTGGAGTGACCAATCTTCTTCAC
TTCAAAGAAATCTTTAATATTAATCCTAATTGCTGAGTAAAGCGAAACTT
AAGTTACTTGGAAAGCAATATGAAATCTAAGCGACATTCATCAAAGCAAT
AAAATTAAATACCCATTTTATTCTCCAAATGGGTCGGCAATAGAATTGCT
TTAAACGATAAGCGATGAGAATTTGATTAATTTGTTTCATAATTTTGCGG
TTGCGCTATGATTTTCTTTGAATGTTGAACAGccattttcggaaattttt
ctCATTCTTGGACAGACAGTCATTCAGTCTAATTCTAATTGAAGACAAGC
CACGAGGCAAAAAGACagaataaaaaatttcttaaaagcTTGCATCATAA
TAGTTGGATTAATTGAAAAATGTCTACTTTGCACTTTTTTAGATGAATAA
AACTTTAGTTGCTACCTTTTAccagaattttccaaaataatttcttttaa
cCAAAACCTCCGAGCACCTCATATTAAGTCTTTCCAAGATACAAGTATCC
TTTGGCCTcgaaaaacataagaaaacatACGAGACAATTatctcttcttc
atttttagctGCATTTTACGAATGGGGTTCATGGTCAGCGTGTAATGCAG
GATGTTCTGGTGAACGAAGTCGCGTTTGTAGAAAAAGCACAAGAGGTTTA
AGTACAAACCTTTGCAGTCCACCTGAAGGACTTGTCATTCAAAGATgcaa
tgaagatatttgtggcAAGGAAAGTAAGcactcaatatttttttaaacaN
gaaaaacataagaaaacatACGAGACAATTATCTCTTCTCCATTTTTAGC
TGCATTTTACGAGTGGGGTTCATGGTCAGCGTGTAATGCAGGATGTTCTG
GTGAACGAAGTCGCGTTTGTAGAAAAAGTACAATAGGTTTAAGTACAAAC
CTTTGCAGTCCACCTGAAGGACTTGTCATTCAAAGATgcaatgaagatat
ttgtggcAAGGAAAGTAAGcactcaatatttttttaaacatttggcTCAT
GGGAAAAAGGTGTTGATAAAAAGAAACCTCGTATCACCagtttaaaatgt
tttctccggCTGTTGGGCGAAAGTCCTTTGTAACACCCGTTTTTCTAGGA
GAATTTCTGTCTCTTTCTGACAAAAAAGAAGAAGTGACCAACACAATCAG
ACAAACGGCTCTCCTGCCATCTTAGGTAACTTTATAGCCGGCTTTTTTCG
ACGCAGTAAGAAAcagaataattttttcaatttccactCAAGCCTTCGTA
TTTTTCGTTTAGTTTCAACAACAGGTGATACGACACGAAGTATTGCGGAG
GTAACCAAAACTCCACCCACAACAACTGAAGACCCTCAAAGCACAAAACA
TTGTTGCGGATGCAAGTTCAGTGAAACACATGGTCAATACAGAACATATT
TCACAACACATATGATGTGCACTTGGAATTTCGAAGCTAAAAAGGATCAT
CTTATTATAGTCACTGTAGAGAAATTAACTAACTTCAATTGGAAACAGGG
CAGCGTGTTTGTGGCAAGCCCTGACAAAATGATTGGACAATTCCGAGGAA
AAGAAGGAGGCAACCAATATCAAAACATGCAACAGAAACGATTCACGTCA
GTTGGCAATCGGATGAATTTGACTTTATTTAGCAGTTTACAATTCCAGGA
TGTAGAAGTTCGATTCTCTTACGTCACATATCGAGGTAAGTCTTTACCAA
ACAATCAATACAAATTTTGAAGCTGCTTTAAAATACCATCATAATAGAAT
TAAACAGCAATCAATTAAACACAAGGCAGTAAGTATAATTCTGAATTGAC
GGTATCATCAAAGATAATTGCTTCCAATAAAGTGTCCCTTTCTAAAATTT
GCCGAACCAGTAGCGTACCTAAGAGGGGCGCAtggcataaaaatctgctc
tcctacacaaattttgcacccctCTTGGCTTTGCTACTGCAAACTGCCAA
ACCTATAATCAACCAATGGATGGCATTGATTTCACCTACTCCTTACAAAC
GATCCCAAAATAAAGACCACTTTATCCCAAAAAACAATTCATAACTTTTA
TCTATCTTTATATTTCAGATCCATCAAAGCCGACAATAATCACACCAAAA
GGTTCTGACGAAAAACCTGATAAGGGGTCTGGTGAAGAGGGAGACGGGGA
AAAGAAAAGTGGTGGCGGTGGAATAAACATTCCATTGATTGCGAGTATAG
TTGCGTGtgttttcatcatcatcattgcaaGTTTATTCATCTTTTATCGG
CGTACAAAATCAACAAATTCTCAAAACACTAAATCAAATTCTAATGAAGA
TGAAAAGGCTGGATTTTTTGGTTCCGGACAAAATAGACGTCTCACGTCAC
CGCGTAGAGATCGAACACCGATGCAGAGCAAGATTCTAATGCCCGACAAT
AATGGTGGAGTACAATTAGTTGACAAACCAGAACACACAGATGGAGGTTA
CCTCAGTGGAGGAGAGTTATTTATACCCAATCAGCAACCGACATATGTGA
CAGCTTTTCCACCGGCAACGGCAGCATACGTTGCAGGGCAACCTTACATC
NTATACCCAATCAACAACCGACATACGTGACAGCTTTTCCACCAGCAACG
GCAGCATATGTTGCAGGGCAACCTTACATTAACTGGCCGCCGATGCCCGC
ATTTGCGGGACAACCTCATGTAGCCAACATGGCAATGTACCCCTACAAAC
AATCAGTAGAACATATCAATCCAACTCAAATGTATTATCCTAAAAGCGGA
GGAGAAACATAAAGTACATATGTGAAATTATTGAAAGTGTTGTTTTCCTG
GAGCACTGAGACTGTAGAGAAGTGGGGAAGTGACTGCCCACATCAGCACT
ATGCAAAAGAACATTTCAATATAATTGAATAATCTTGTATTTATAATGTG
ATAACAGAGGAACATCTCATATCTTTACATATTATAACTAAAATTATAAT
GACTAGtagttaaaaaaaacaatttatcataTGGAACAGTTATTTATACC
TTAAGcaaagaaaatcttgaaaagtttttattttatcgaaTTCTGGATGA
AAAGAAACCTGGTCTGAATCATTTATTCGCAACGGACAAACGAGGTATTG
TGTTCAAGGTTGgaggttttcaaaaataaaaataaagattcaAAAGTTGC
TTTTATTCATAACTGCTCAAAATCGAGGACATTCAAATTGtttgaaagta
aaaaatcaGCGAACAATAAAAGACCAAATATTGTACCTAGAAAATAGGAG
AAAAGACTAAATTGCTAAATATAAGCTAAAGAACCAATAGTATTAGAGTT
AATGATATTTAAGTACATAGAGATGATGTTTTAATGAGAATGTGCGTGAA
GTCTAGCATTTTAGAGTACTTCAATCTAACGTCTgcttagcctatactag
acgtcacagCTTTTTCTCTACAcagtaacgtctattccactttgcgactt
tttccaggttttcgggcgccaaacattcgattttttgacgccACTTTAAA
ATCGCTCTAGCCTATCTCTATAccaacacgcgattttttgATCACTCTAT
TGTGGTCGTCTGGCACAGGCAAAAATCGCTCCTGCAGTAGCGAAAATATG
GAATTTGCGTCGAATCACTTAGaaggcttctattttttgaaaatcatcaa
agtggaactAACCAAGATacgggatgaaaaatcccgATTTTTAGAGAGGT
ACTCGATATTGTCTGATATGAGTgtcaaaaaattatgaaaaaacgaTGAT
GATATGGAAATAACAGGTAAAGTAAATATATATTCatggaagaaaaaata
tttaaagaaacTGAAAGCTTAGTATGTACAAAATATATTTCCACACTTTC
GGTTATTGAAAGAATAATTGCTAAAAAATATCAAGAGTTAAAAATAGCCG
TACAAAGGGACCCTTCAAGATCTAGCTCAGTCGGCCGATCACAAAACCGA
GTTTTTTCGTACTTCGCGAAAAGGGCTACAACGCGATAACAAGCCGACCG
GCTAAACTAGATCCTTTCTACGTCAAAAGTTTATCCCCTGACTGTGAATA
TttacatgaaaaataaatacttaTCTGTTTTGTTTTCAATGACACGCTTA
AAATATTGCCGGAGGAAACTTTCTGGTTGTTAGCGGCGTGTCGCACGAGG
TTTCCGTTTAATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000439XLOC_000439Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000696-exon-sc0000005-1491911889:397988..398174TCONS_00000696-exon-sc0000005-1491911889:397988..398174Clytia hemisphaericaexon
TCONS_00000696-exon-sc0000005-1510915933:397988..398174TCONS_00000696-exon-sc0000005-1510915933:397988..398174Clytia hemisphaericaexon
TCONS_00000696-exon-sc0000005-1575043694:397988..398174TCONS_00000696-exon-sc0000005-1575043694:397988..398174Clytia hemisphaericaexon
TCONS_00000696-exon-sc0000005-1491911889:399094..399158TCONS_00000696-exon-sc0000005-1491911889:399094..399158Clytia hemisphaericaexon
TCONS_00000696-exon-sc0000005-1510915933:399094..399158TCONS_00000696-exon-sc0000005-1510915933:399094..399158Clytia hemisphaericaexon
TCONS_00000696-exon-sc0000005-1575043694:399094..399158TCONS_00000696-exon-sc0000005-1575043694:399094..399158Clytia hemisphaericaexon
TCONS_00000696-exon-sc0000005-1491911889:400137..400301TCONS_00000696-exon-sc0000005-1491911889:400137..400301Clytia hemisphaericaexon
TCONS_00000696-exon-sc0000005-1510915933:400137..400301TCONS_00000696-exon-sc0000005-1510915933:400137..400301Clytia hemisphaericaexon
TCONS_00000696-exon-sc0000005-1575043694:400137..400301TCONS_00000696-exon-sc0000005-1575043694:400137..400301Clytia hemisphaericaexon
TCONS_00000696-exon-sc0000005-1491911889:400600..401022TCONS_00000696-exon-sc0000005-1491911889:400600..401022Clytia hemisphaericaexon
TCONS_00000696-exon-sc0000005-1510915933:400600..401022TCONS_00000696-exon-sc0000005-1510915933:400600..401022Clytia hemisphaericaexon
TCONS_00000696-exon-sc0000005-1575043694:400600..401022TCONS_00000696-exon-sc0000005-1575043694:400600..401022Clytia hemisphaericaexon
TCONS_00000696-exon-sc0000005-1491911889:401406..403501TCONS_00000696-exon-sc0000005-1491911889:401406..403501Clytia hemisphaericaexon
TCONS_00000696-exon-sc0000005-1510915933:401406..403501TCONS_00000696-exon-sc0000005-1510915933:401406..403501Clytia hemisphaericaexon
TCONS_00000696-exon-sc0000005-1575043694:401406..403501TCONS_00000696-exon-sc0000005-1575043694:401406..403501Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:397988..403501 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.013583	0.00794957	0	0.018677	0	0.387117	0.414617	2.35246	2.3267	1.15118	5.15565	10.9716	7.14622	9.61004	6.53635	1.91524	4.05538	0.0079607	0.0155002	0.0288666	0.104559	0.00814031	0	0.0221601	0.013355	0	0.010834	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top