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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000693 ID=TCONS_00000693|Name=TCONS_00000693|organism=Clytia hemisphaerica|type=transcript|length=736bp
CACAAAATTGCCTTATACTGCAACGAGGATATAAATCTGAGCACTCCTTA
Aacagtattttttttgtcttactgagctttcaaattaatagacgcccaaa
aaaaataaatatttaacgCTTTAGATAGAAAGTACAGCTCATtgcgaaaa
acaaaatttccaaatgaaGCAGTCTTTGTTGTTTACGCTTCCACTAAAAT
TCTTTAATANGGGCAGGTTTTTCAATTGTTGTTTTAAAATGTTTCCCAAC
CACCCAACCAAAAGTTCGAAAAGTCGATGAAAATTCGATAGTAGCATAAg
cctgatacataccttatactCAGTGACTAAATGGAATGAGTATTTTTTAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGA
AATGTAAtgtttacgcatgcgttttaaacaTCGTAATGGCGATTGTCTCG
TTTAAATAAAACAAcattattattttgagcaaaataCAATTGGCTAAACG
AGCCGACCGACCTAATTACGTCATTAAATCtcagaaacaaaagaaagaaa
aatggtaggCAAAGTTGtgacaagaaaaaaaacatagtcttttggaaata
ctaaaaaactacgcaaaaatgttctcaattcCAGGCAAAAGGATATAAAA
TGTCTCTAATTTGGCTCTAATTTACTACCACACCAAGAAGTATCTTTTCA
AGACggctttttaaatcaaatctgAGAAAAACACAC Run BLAST on NCBI transcript from alignment at sc0000005:211067..216252+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000693 ID=TCONS_00000693|Name=TCONS_00000693|organism=Clytia hemisphaerica|type=transcript|length=5186bp|location=Sequence derived from alignment at sc0000005:211067..216252+ (Clytia hemisphaerica)
CACAAAATTGCCTTATACTGCAACGAGGATATAAATCTGAGCACTCCTTA
Aacagtattttttttgtcttactgagctttcaaattaatagacgcccaaa
aaaaataaatatttaacgCTTTAGATAGAAAGTACAGCTCATtgcgaaaa
acaaaatttccaaatgaaGCAGTCTTTGTTGTTTACGCTTCCACTAAAAT
TCTTTAATANGGGCAGGTTTTTCAATTGTTGTTTTAAAATGTTTCCCAAC
CACCCAACCAAAAGTTCGAAAAGTCGATGAAAAGTTCGATAGTAGCATAA
GCCCGATACATACCTTATACTCAGTGACTAAATGGAATGAGTATTTTTTA
TCTGTAACTTAAATTTCACATTCAATCGAGGGGCGTCTTTACATTATCAG
AATGGATGTTGTATAGAAATGTAAtgtttacgcatgcgttttaaacaTCG
TAATGGGGATTGTCTCGTTTAAATAAAACAACATTATTATTTTGAGCNgt
tgcgaagcgatccagactccacctcaattcgcaagttgctagcaaaataa
taGACACTCTGATAAAACCCCAAAAGAGACAGGGTCTTATAAtacggcag
gtacaaaatgcataaaacataatgcatattgcataatgcataatagtatt
gtggaatttacagaacgattttatattttctaaaactctcctttgtagag
gctaaaaccgtgAAACCCtgtttagaagagtttcttaagtaaacattcca
atcagagggatttccccagacatgatatttacttttcgaattcgaacaaa
agagaaaacattcgaatcataacaacaaagggttttccgccAGCATAAAT
ggtttcccccttcttctttctcaaaaaaaggtaaacacattTGAACACat
ttaaacattcgaatgtaaaacgattcgaagtctattttctttgatctagc
tttcgcATTAAGCTCTTTACTtcatattggctggatattggcttatctaa
caagaagcattcacatggttaatgctttgtaagagggaaaacccgttaag
attttttagaaattgttCGAAATGATCTccgagaaaacccagaataaaga
tctttatcttgctataaaatttacgttttcgagttttCGCTTtcgaaaag
taatatacggaggagatattttcgtgttttttctacactatactacatTC
TGTAANNtgtagaaaatggtatatttgttttgttgaaagtaacatctttc
aaattctccttattatagacTCTAAacttgacatttttcaaatattatgc
attatgcattatgcaatatgcattatgttttatgcattttgagcCTGCCG
TCTTATAataccccaaacacaccacacaaACCTCGGCGGCACAACTCTCG
CCACCCCGCGCAAGGATCTTTCTTTCATTCTCCTAGTTCTTCtaatgtaa
atggtgccttaaaaaatcgaacgatattcgtcgaacgttcgaacattttt
attcgaatcgtctgcgtctgtcgaaatcatcaaaagtaaacaaaagcaaa
aatctataaagatggcttgttgttggttcttggccggttttgattttttt
tcttgacaaatttgccaaatttgattacctccgtacctctttatcattga
atatccacttggttttgcaaagTAAGTTTAGTTCACTTAAAAGTTATCTG
GCActcagatggtgaaattttcatccgacacgctatctatctgaaggtcg
ggaaaattttcaacatctggaaggtttacattgcGGAATTTTGCGGGACC
gtgtcaagaattttgcagcgggaggtctggtaacccagccctcgttttcg
gggattggtgggtccaaccaaaatatttttagctttacgggcaagggctg
ttgaacccgactggggatgcgacacatcaaaggccgattcctctccgatg
ggaaattggccctcTCCCTTTCTTTAGAGCTAAAGCGTGGGCGGCCGCTA
AACCGCCATTGGAATATATCAGATAAActtaaaagagcactcctcccgcc
cgcgcAACCAGCAAACACTTCTTATTTATTGACCTTAttcttatttgata
cttgatggttacttttaaaagtcaaggaataatgaagatcttttttgtca
tctttcaaactatttttttccatttaacagcaaaacaaaactaaacattt
aaaaccgaagaaccactgttTAGATGCGtgcgcccgcgcggcaatttgat
caacttcagattttaagtccgtgtttcggcttccggtagttttttgctgt
tcactgctagggtacaccattttaaaacagcatttttcgcagtcctagct
accaaaccgagaaaatttTCGTGGCTTTAACCCAAAGCCTTCAAggtaat
tttgacaaaatcatcggtttgaagatgtgatttatatagcaaattttata
gcaaattttcgcttgggatacatagaagttaaaggtacgtgcacacaatg
tagcaaaactgcttcgctcataaattcgcttcgcaaaaagacTTTTGCta
cttgttttgatttcgaTGCTCCCATTTTTTAATGTTAACTTACGATGATC
ATTGAAGGGAAACAACTACCACAAAATTGCCTTATACNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGCTTTAGATAGAAAGTAC
AGCTCATtgggaaaaacaaaatttccaaatgaaGCAGTCTTTGTTGTTTA
CGCTTCCACTAAAATTCTTTAATAGAGAATAATGTAATATCATGTGGATT
AAATATTTTGGGCAGGTTTTTCAATTGTTGTTTTAAAATGTTTCCCAACC
ACCCAACAAAAAGTTCGAAAAGTCGATGAAAAGTTCGATAGTAGCATAAg
cctgatacataccttatactCAGTGACTAAATGGAATGAGTATTTTTTAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGA
AATGTAAtgtttacgcatgcgttttaaacaTCGTAATGGCGATTGTCTCG
TTTAAATAAAACAAcattattattttgagcaaaataCAATTGGCTAAACG
AGCCGACCGACCTAATTACGTCATTAAATCtcagaaacaaaagaaagaaa
aatggtaggCAAAGTTGtgacaagaaaaaaaacatagtcttttggaaata
ctaaaaaactacgcaaaaatgttctcaattcCAGGCAAAAGGATATAAAA
TGTCTCTAATTTGGCTCTAATTTACTACCACACCAAGAAGTATCTTTTCA
AGACggctttttaaatcaaatctgAGAAAAACACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000693-exon-sc0000005-1491911889:211067..211349 | TCONS_00000693-exon-sc0000005-1491911889:211067..211349 | Clytia hemisphaerica | exon |
| TCONS_00000693-exon-sc0000005-1510915933:211067..211349 | TCONS_00000693-exon-sc0000005-1510915933:211067..211349 | Clytia hemisphaerica | exon |
| TCONS_00000693-exon-sc0000005-1575043694:211067..211349 | TCONS_00000693-exon-sc0000005-1575043694:211067..211349 | Clytia hemisphaerica | exon |
| TCONS_00000693-exon-sc0000005-1491911889:215800..216252 | TCONS_00000693-exon-sc0000005-1491911889:215800..216252 | Clytia hemisphaerica | exon |
| TCONS_00000693-exon-sc0000005-1510915933:215800..216252 | TCONS_00000693-exon-sc0000005-1510915933:215800..216252 | Clytia hemisphaerica | exon |
| TCONS_00000693-exon-sc0000005-1575043694:215800..216252 | TCONS_00000693-exon-sc0000005-1575043694:215800..216252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:211067..216252 + |
Blast
The following BLAST results are available for this feature:
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