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TCONS_00000687 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000687
Unique NameTCONS_00000687
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1209

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000687 ID=TCONS_00000687|Name=TCONS_00000687|organism=Clytia hemisphaerica|type=transcript|length=1209bp
GCAAAACTTCAGAGCAGTAACAGAAGCAGCAGAATAAATAAACAATCACA
Tctataaaatagcaaaaatattgaacaatatttatttttcattttgtaaa
tttttggaaaagctaTCCCAGAGACATAAGCATGAAGatTAACACTGGAA
CATCAATCTTCATCCTCACATTAGCActgaactttgtttttatccaaTCG
GCACCCACTACAAAGTCACGTGACTCCGATGCTAATAACAAGACACGTGA
TCAAAAAGAGTTGGACTTCgagaattttttcaacaaaatgtcGGAAGAGG
TaatggaaaaagctgaaaatgaaaTGGAGAAAATGAAAGAGATTGAAGAT
GAATTTTTCAAGCAGTTCTTCCCTTCGTCGGCAGAGCAGGAAAAATCTTC
TACCAGGAAGAAAAGATCAGTTAAAAGTGTAGGCAAACTAGACACAAGAT
TTGAAGGAAATCATCTAAAACGTATTCAACGATCCACATCAAATACTAAC
GACCTTAAAGCTGAAAATATGGAAGCTGGGATTGTCCACCAAAAACGAAA
AAGGCGATCAGTCTTTGACAATAAGGAACTTACTCATGAATCTGAACGTG
TGCGAAGATCGTTAAGTGAGCGACGTATGAATACCATGTCACGTAGCTCA
TACAGACGTATGACGTTCATGAAACGTTCACGACGAGTCGTCTGTCACCG
GCGTTGTTTGTGGCGAAAAATGTATTTCTTATGTCGTTATGGTGTTGAGT
TGGATGAACCATGTGGATGTGAGTAGAGGATCTCAGTAAAGTCGTTGTCA
TTGGTATGACAAATTTCCactttgattttctgaaagtaaGAAGTTCAGTC
AAATCATTGAATGAAGAGCTATCCACAGCACCCAAGTTACGGTTATAAAT
CAATAACATTGTAACGTTATTGCAGAATGTGTCCAAGTCGACACAACCcg
atctcgtacccagagcaaCTTCCACAACTTTTTTATCTTAATGATTGACG
TGGATATGGACGTGGGTACTACGTGCTGTTTTGTGCCCGTTGCGCGACAT
GGAAACAAAGAGACTGGATACAAGTCTGGCACAAACCGTCCCAAAGTAGG
TTACGTAGTATCTAAGAGCTGGCAAAATGTAGTCGTATTTGTCGGCCGAT
AAACTGTTATAATGTCGAATTTGAGTCATTTTGAAGAACTTAAGATGCTC
AGAATAAAT
Run BLAST on NCBI

protein sequence of TCONS_00000687-protein

>TCONS_00000687-protein ID=TCONS_00000687-protein|Name=TCONS_00000687-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MKINTGTSIFILTLALNFVFIQSAPTTKSRDSDANNKTRDQKELDFENFF
NKMSEEVMEKAENEMEKMKEIEDEFFKQFFPSSAEQEKSSTRKKRSVKSV
GKLDTRFEGNHLKRIQRSTSNTNDLKAENMEAGIVHQKRKRRSVFDNKEL
THESERVRRSLSERRMNTMSRSSYRRMTFMKRSRRVVCHRRCLWRKMYFL
CRYGVELDEPCGCE
Run BLAST on NCBI

transcript from alignment at sc0000005:25973..27347+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000687 ID=TCONS_00000687|Name=TCONS_00000687|organism=Clytia hemisphaerica|type=transcript|length=1375bp|location=Sequence derived from alignment at sc0000005:25973..27347+ (Clytia hemisphaerica)
GCAAAACTTCAGAGCAGTAACAGAAGCAGCAGAATAAATAAACAATCACA Tctataaaatagcaaaaatattgaacaatatttatttttcattttgtaaa tttttggaaaagctaTCCCAGAGACATAAGCATGAAGGTGAATATGTTTT TCCATattcaggttttttttaatctgatACGGATAAAAACCTGCATTTCA TACTTTTAGGCttgtctttttctttatcaagGTTTCAAGATTTCAAGGGT TTCTGGAGCGTACTCTCGAGACAAAGAGCtaatcaaaacttttttatttc tagatTAACACTGGAACATCAATCTTCATCCTCACATTAGCActgaactt tgtttttatccaaTCGGCACCCACTACAAAGTCACGTGACTCCGATGCTA ATAACAAGACACGTGATCAAAAAGAGTTGGACTTCgagaattttttcaac aaaatgtcGGAAGAGGTaatggaaaaagctgaaaatgaaaTGGAGAAAAT GAAAGAGATTGAAGATGAATTTTTCAAGCAGTTCTTCCCTTCGTCGGCAG AGCAGGAAAAATCTTCTACCAGGAAGAAAAGATCAGTTAAAAGTGTAGGC AAACTAGACACAAGATTTGAAGGAAATCATCTAAAACGTATTCAACGATC CACATCAAATACTAACGACCTTAAAGCTGAAAATATGGAAGCTGGGATTG TCCACCAAAAACGAAAAAGGCGATCAGTCTTTGACAATAAGGAACTTACT CATGAATCTGAACGTGTGCGAAGATCGTTAAGTGAGCGACGTATGAATAC CATGTCACGTAGCTCATACAGACGTATGACGTTCATGAAACGTTCACGAC GAGTCGTCTGTCACCGGCGTTGTTTGTGGCGAAAAATGTATTTCTTATGT CGTTATGGTGTTGAGTTGGATGAACCATGTGGATGTGAGTAGAGGATCTC AGTAAAGTCGTTGTCATTGGTATGACAAATTTCCactttgattttctgaa agtaaGAAGTTCAGTCAAATCATTGAATGAAGAGCTATCCACAGCACCCA AGTTACGGTTATAAATCAATAACATTGTAACGTTATTGCAGAATGTGTCC AAGTCGACACAACCcgatctcgtacccagagcaaCTTCCACAACTTTTTT ATCTTAATGATTGACGTGGATATGGACGTGGGTACTACGTGCTGTTTTGT GCCCGTTGCGCGACATGGAAACAAAGAGACTGGATACAAGTCTGGCACAA ACCGTCCCAAAGTAGGTTACGTAGTATCTAAGAGCTGGCAAAATGTAGTC GTATTTGTCGGCCGATAAACTGTTATAATGTCGAATTTGAGTCATTTTGA AGAACTTAAGATGCTCAGAATAAAT

Coding sequence (CDS) from alignment at sc0000005:25973..27347+

>TCONS_00000687 ID=TCONS_00000687|Name=TCONS_00000687|organism=Clytia hemisphaerica|type=CDS|length=1290bp|location=Sequence derived from alignment at sc0000005:25973..27347+ (Clytia hemisphaerica)
ATGAAGatTAACACTGGAACATCAATCTTCATCCTCACATTAGCActgaa
ctttgtttttatccaaTCGGCACCCACTACAAAGTCACGTGACTCCGATG
CTAATAACAAGACACGTGATCAAAAAGAGTTGGACTTCgagaattttttc
aacaaaatgtcGGAAGAGGTaatggaaaaagctgaaaatgaaaTGGAGAA
AATGAAAGAGATTGAAGATGAATTTTTCAAGCAGTTCTTCCCTTCGTCGG
CAGAGCAGGAAAAATCTTCTACCAGGAAGAAAAGATCAGTTAAAAGTGTA
GGCAAACTAGACACAAGATTTGAAGGAAATCATCTAAAACGTATTCAACG
ATCCACATCAAATACTAACGACCTTAAAGCTGAAAATATGGAAGCTGGGA
TTGTCCACCAAAAACGAAAAAGGCGATCAGTCTTTGACAATAAGGAACTT
ACTCATGAATCTGAACGTGTGCGAAGATCGTTAAGTGAGCGACGTATGAA
TACCATGTCACGTAGCTCATACAGACGTATGACGTTCATGAAACGTTCAC
GACGAGTCGTCTGTCACCGGCGTTGTTTGTGGCGAAAAATGTATTTCTTA
TGTCGTTATGGTGTTGAGTTGGATGAACCATGTGGATGTGAGTAGATGAA
GatTAACACTGGAACATCAATCTTCATCCTCACATTAGCActgaactttg
tttttatccaaTCGGCACCCACTACAAAGTCACGTGACTCCGATGCTAAT
AACAAGACACGTGATCAAAAAGAGTTGGACTTCgagaattttttcaacaa
aatgtcGGAAGAGGTaatggaaaaagctgaaaatgaaaTGGAGAAAATGA
AAGAGATTGAAGATGAATTTTTCAAGCAGTTCTTCCCTTCGTCGGCAGAG
CAGGAAAAATCTTCTACCAGGAAGAAAAGATCAGTTAAAAGTGTAGGCAA
ACTAGACACAAGATTTGAAGGAAATCATCTAAAACGTATTCAACGATCCA
CATCAAATACTAACGACCTTAAAGCTGAAAATATGGAAGCTGGGATTGTC
CACCAAAAACGAAAAAGGCGATCAGTCTTTGACAATAAGGAACTTACTCA
TGAATCTGAACGTGTGCGAAGATCGTTAAGTGAGCGACGTATGAATACCA
TGTCACGTAGCTCATACAGACGTATGACGTTCATGAAACGTTCACGACGA
GTCGTCTGTCACCGGCGTTGTTTGTGGCGAAAAATGTATTTCTTATGTCG
TTATGGTGTTGAGTTGGATGAACCATGTGGATGTGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000433XLOC_000433Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000687-proteinTCONS_00000687-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000687-exon-sc0000005-1491911889:25973..26109TCONS_00000687-exon-sc0000005-1491911889:25973..26109Clytia hemisphaericaexon
TCONS_00000687-exon-sc0000005-1510915933:25973..26109TCONS_00000687-exon-sc0000005-1510915933:25973..26109Clytia hemisphaericaexon
TCONS_00000687-exon-sc0000005-1575043694:25973..26109TCONS_00000687-exon-sc0000005-1575043694:25973..26109Clytia hemisphaericaexon
TCONS_00000687-exon-sc0000005-1491911889:26276..27347TCONS_00000687-exon-sc0000005-1491911889:26276..27347Clytia hemisphaericaexon
TCONS_00000687-exon-sc0000005-1510915933:26276..27347TCONS_00000687-exon-sc0000005-1510915933:26276..27347Clytia hemisphaericaexon
TCONS_00000687-exon-sc0000005-1575043694:26276..27347TCONS_00000687-exon-sc0000005-1575043694:26276..27347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:25973..27347 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0709555 0 0.120509 0 0.143531 0.11342 0.136837 0.170806 0.0896892 0.111095 0 0.0945119 7.66842 6.32197 5.82203 3.97792 0.452761 0.873535 0.226282 0.236788 0.308717 0.301163 0.122034 0 0 0 0 0 0 0.0401195
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000687 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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