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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000687 ID=TCONS_00000687|Name=TCONS_00000687|organism=Clytia hemisphaerica|type=transcript|length=1209bp
GCAAAACTTCAGAGCAGTAACAGAAGCAGCAGAATAAATAAACAATCACA
Tctataaaatagcaaaaatattgaacaatatttatttttcattttgtaaa
tttttggaaaagctaTCCCAGAGACATAAGCATGAAGatTAACACTGGAA
CATCAATCTTCATCCTCACATTAGCActgaactttgtttttatccaaTCG
GCACCCACTACAAAGTCACGTGACTCCGATGCTAATAACAAGACACGTGA
TCAAAAAGAGTTGGACTTCgagaattttttcaacaaaatgtcGGAAGAGG
TaatggaaaaagctgaaaatgaaaTGGAGAAAATGAAAGAGATTGAAGAT
GAATTTTTCAAGCAGTTCTTCCCTTCGTCGGCAGAGCAGGAAAAATCTTC
TACCAGGAAGAAAAGATCAGTTAAAAGTGTAGGCAAACTAGACACAAGAT
TTGAAGGAAATCATCTAAAACGTATTCAACGATCCACATCAAATACTAAC
GACCTTAAAGCTGAAAATATGGAAGCTGGGATTGTCCACCAAAAACGAAA
AAGGCGATCAGTCTTTGACAATAAGGAACTTACTCATGAATCTGAACGTG
TGCGAAGATCGTTAAGTGAGCGACGTATGAATACCATGTCACGTAGCTCA
TACAGACGTATGACGTTCATGAAACGTTCACGACGAGTCGTCTGTCACCG
GCGTTGTTTGTGGCGAAAAATGTATTTCTTATGTCGTTATGGTGTTGAGT
TGGATGAACCATGTGGATGTGAGTAGAGGATCTCAGTAAAGTCGTTGTCA
TTGGTATGACAAATTTCCactttgattttctgaaagtaaGAAGTTCAGTC
AAATCATTGAATGAAGAGCTATCCACAGCACCCAAGTTACGGTTATAAAT
CAATAACATTGTAACGTTATTGCAGAATGTGTCCAAGTCGACACAACCcg
atctcgtacccagagcaaCTTCCACAACTTTTTTATCTTAATGATTGACG
TGGATATGGACGTGGGTACTACGTGCTGTTTTGTGCCCGTTGCGCGACAT
GGAAACAAAGAGACTGGATACAAGTCTGGCACAAACCGTCCCAAAGTAGG
TTACGTAGTATCTAAGAGCTGGCAAAATGTAGTCGTATTTGTCGGCCGAT
AAACTGTTATAATGTCGAATTTGAGTCATTTTGAAGAACTTAAGATGCTC
AGAATAAAT Run BLAST on NCBI protein sequence of TCONS_00000687-protein >TCONS_00000687-protein ID=TCONS_00000687-protein|Name=TCONS_00000687-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MKINTGTSIFILTLALNFVFIQSAPTTKSRDSDANNKTRDQKELDFENFF
NKMSEEVMEKAENEMEKMKEIEDEFFKQFFPSSAEQEKSSTRKKRSVKSV
GKLDTRFEGNHLKRIQRSTSNTNDLKAENMEAGIVHQKRKRRSVFDNKEL
THESERVRRSLSERRMNTMSRSSYRRMTFMKRSRRVVCHRRCLWRKMYFL
CRYGVELDEPCGCE Run BLAST on NCBI transcript from alignment at sc0000005:25973..27347+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000687 ID=TCONS_00000687|Name=TCONS_00000687|organism=Clytia hemisphaerica|type=transcript|length=1375bp|location=Sequence derived from alignment at sc0000005:25973..27347+ (Clytia hemisphaerica)
GCAAAACTTCAGAGCAGTAACAGAAGCAGCAGAATAAATAAACAATCACA
Tctataaaatagcaaaaatattgaacaatatttatttttcattttgtaaa
tttttggaaaagctaTCCCAGAGACATAAGCATGAAGGTGAATATGTTTT
TCCATattcaggttttttttaatctgatACGGATAAAAACCTGCATTTCA
TACTTTTAGGCttgtctttttctttatcaagGTTTCAAGATTTCAAGGGT
TTCTGGAGCGTACTCTCGAGACAAAGAGCtaatcaaaacttttttatttc
tagatTAACACTGGAACATCAATCTTCATCCTCACATTAGCActgaactt
tgtttttatccaaTCGGCACCCACTACAAAGTCACGTGACTCCGATGCTA
ATAACAAGACACGTGATCAAAAAGAGTTGGACTTCgagaattttttcaac
aaaatgtcGGAAGAGGTaatggaaaaagctgaaaatgaaaTGGAGAAAAT
GAAAGAGATTGAAGATGAATTTTTCAAGCAGTTCTTCCCTTCGTCGGCAG
AGCAGGAAAAATCTTCTACCAGGAAGAAAAGATCAGTTAAAAGTGTAGGC
AAACTAGACACAAGATTTGAAGGAAATCATCTAAAACGTATTCAACGATC
CACATCAAATACTAACGACCTTAAAGCTGAAAATATGGAAGCTGGGATTG
TCCACCAAAAACGAAAAAGGCGATCAGTCTTTGACAATAAGGAACTTACT
CATGAATCTGAACGTGTGCGAAGATCGTTAAGTGAGCGACGTATGAATAC
CATGTCACGTAGCTCATACAGACGTATGACGTTCATGAAACGTTCACGAC
GAGTCGTCTGTCACCGGCGTTGTTTGTGGCGAAAAATGTATTTCTTATGT
CGTTATGGTGTTGAGTTGGATGAACCATGTGGATGTGAGTAGAGGATCTC
AGTAAAGTCGTTGTCATTGGTATGACAAATTTCCactttgattttctgaa
agtaaGAAGTTCAGTCAAATCATTGAATGAAGAGCTATCCACAGCACCCA
AGTTACGGTTATAAATCAATAACATTGTAACGTTATTGCAGAATGTGTCC
AAGTCGACACAACCcgatctcgtacccagagcaaCTTCCACAACTTTTTT
ATCTTAATGATTGACGTGGATATGGACGTGGGTACTACGTGCTGTTTTGT
GCCCGTTGCGCGACATGGAAACAAAGAGACTGGATACAAGTCTGGCACAA
ACCGTCCCAAAGTAGGTTACGTAGTATCTAAGAGCTGGCAAAATGTAGTC
GTATTTGTCGGCCGATAAACTGTTATAATGTCGAATTTGAGTCATTTTGA
AGAACTTAAGATGCTCAGAATAAAT Coding sequence (CDS) from alignment at sc0000005:25973..27347+ >TCONS_00000687 ID=TCONS_00000687|Name=TCONS_00000687|organism=Clytia hemisphaerica|type=CDS|length=1290bp|location=Sequence derived from alignment at sc0000005:25973..27347+ (Clytia hemisphaerica)
ATGAAGatTAACACTGGAACATCAATCTTCATCCTCACATTAGCActgaa
ctttgtttttatccaaTCGGCACCCACTACAAAGTCACGTGACTCCGATG
CTAATAACAAGACACGTGATCAAAAAGAGTTGGACTTCgagaattttttc
aacaaaatgtcGGAAGAGGTaatggaaaaagctgaaaatgaaaTGGAGAA
AATGAAAGAGATTGAAGATGAATTTTTCAAGCAGTTCTTCCCTTCGTCGG
CAGAGCAGGAAAAATCTTCTACCAGGAAGAAAAGATCAGTTAAAAGTGTA
GGCAAACTAGACACAAGATTTGAAGGAAATCATCTAAAACGTATTCAACG
ATCCACATCAAATACTAACGACCTTAAAGCTGAAAATATGGAAGCTGGGA
TTGTCCACCAAAAACGAAAAAGGCGATCAGTCTTTGACAATAAGGAACTT
ACTCATGAATCTGAACGTGTGCGAAGATCGTTAAGTGAGCGACGTATGAA
TACCATGTCACGTAGCTCATACAGACGTATGACGTTCATGAAACGTTCAC
GACGAGTCGTCTGTCACCGGCGTTGTTTGTGGCGAAAAATGTATTTCTTA
TGTCGTTATGGTGTTGAGTTGGATGAACCATGTGGATGTGAGTAGATGAA
GatTAACACTGGAACATCAATCTTCATCCTCACATTAGCActgaactttg
tttttatccaaTCGGCACCCACTACAAAGTCACGTGACTCCGATGCTAAT
AACAAGACACGTGATCAAAAAGAGTTGGACTTCgagaattttttcaacaa
aatgtcGGAAGAGGTaatggaaaaagctgaaaatgaaaTGGAGAAAATGA
AAGAGATTGAAGATGAATTTTTCAAGCAGTTCTTCCCTTCGTCGGCAGAG
CAGGAAAAATCTTCTACCAGGAAGAAAAGATCAGTTAAAAGTGTAGGCAA
ACTAGACACAAGATTTGAAGGAAATCATCTAAAACGTATTCAACGATCCA
CATCAAATACTAACGACCTTAAAGCTGAAAATATGGAAGCTGGGATTGTC
CACCAAAAACGAAAAAGGCGATCAGTCTTTGACAATAAGGAACTTACTCA
TGAATCTGAACGTGTGCGAAGATCGTTAAGTGAGCGACGTATGAATACCA
TGTCACGTAGCTCATACAGACGTATGACGTTCATGAAACGTTCACGACGA
GTCGTCTGTCACCGGCGTTGTTTGTGGCGAAAAATGTATTTCTTATGTCG
TTATGGTGTTGAGTTGGATGAACCATGTGGATGTGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000687-exon-sc0000005-1491911889:25973..26109 | TCONS_00000687-exon-sc0000005-1491911889:25973..26109 | Clytia hemisphaerica | exon |
| TCONS_00000687-exon-sc0000005-1510915933:25973..26109 | TCONS_00000687-exon-sc0000005-1510915933:25973..26109 | Clytia hemisphaerica | exon |
| TCONS_00000687-exon-sc0000005-1575043694:25973..26109 | TCONS_00000687-exon-sc0000005-1575043694:25973..26109 | Clytia hemisphaerica | exon |
| TCONS_00000687-exon-sc0000005-1491911889:26276..27347 | TCONS_00000687-exon-sc0000005-1491911889:26276..27347 | Clytia hemisphaerica | exon |
| TCONS_00000687-exon-sc0000005-1510915933:26276..27347 | TCONS_00000687-exon-sc0000005-1510915933:26276..27347 | Clytia hemisphaerica | exon |
| TCONS_00000687-exon-sc0000005-1575043694:26276..27347 | TCONS_00000687-exon-sc0000005-1575043694:26276..27347 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:25973..27347 + |
Blast
The following BLAST results are available for this feature:
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