TCONS_00000685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000685
Unique NameTCONS_00000685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length700

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000685 ID=TCONS_00000685|Name=TCONS_00000685|organism=Clytia hemisphaerica|type=transcript|length=700bp
cttaaaaagcattttgctacccaaaattggcttaaaacggctcgtttagg
gcNAAGCCAAAATCTTGCGATTGGCACCAACCGGTGTTGCTGCAATCAAT
ATTGATGGTACAACAATACATACTGGTCTGGGTCTATCCCGTCACAGTTT
TCTACCACTAAGTGATAAAcaaagaactaattttcgtctCACACTTCAAG
ACATTAGCGTGATTTTCATTGACGAAGTATCCATGGTGAGTCCACAGACT
TTACTGCAAATTCACCAACGCCTTTGTGACATATTTGGGACATCTGACCG
TATACCGTTTGCCAATAAGACAGTTATTGCTAGTGGTGATCTATATCAGT
TACCTCCTGTTTTTGGCGGCCCAGTGTTTACGTTGAACGGATTTGTGATA
GATTTATTGAAACTTTGGCGTCAATTCAAGTTTGCTGAGCTTAATGAGGT
TATGCGCCAACAGGGTGACAATGCATTTGTAAATTTGCTGAACAACATTA
GAATAGGAAAAATAACAGAAGAAGATGAACGAATCTTGAGATCCAAATTT
ATTTCACAAGATGATCCAAATTACCCATGGGATGCTTTGCATTTATTTGC
AGAAAACAGCGTGGTGAAAGCTCACAATGACAAAATGATTGAAACATTGT
CAACACctattatcaatatttttgccATTGAACAATACCCTCGTGGACTN
Run BLAST on NCBI

protein sequence of TCONS_00000685-protein

>TCONS_00000685-protein ID=TCONS_00000685-protein|Name=TCONS_00000685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MVSPQTLLQIHQRLCDIFGTSDRIPFANKTVIASGDLYQLPPVFGGPVFT
LNGFVIDLLKLWRQFKFAELNEVMRQQGDNAFVNLLNNIRIGKITEEDER
ILRSKFISQDDPNYPWDALHLFAENSVVKAHNDKMIETLSTPIINIFAIE
QYPRGX
Run BLAST on NCBI

transcript from alignment at sc0000002:1761916..1762615

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000685 ID=TCONS_00000685|Name=TCONS_00000685|organism=Clytia hemisphaerica|type=transcript|length=700bp|location=Sequence derived from alignment at sc0000002:1761916..1762615 (Clytia hemisphaerica)
NAGTCCACGAGGGTATTGTTCAATggcaaaaatattgataatagGTGTTG
ACAATGTTTCAATCATTTTGTCATTGTGAGCTTTCACCACGCTGTTTTCT
GCAAATAAATGCAAAGCATCCCATGGGTAATTTGGATCATCTTGTGAAAT
AAATTTGGATCTCAAGATTCGTTCATCTTCTTCTGTTATTTTTCCTATTC
TAATGTTGTTCAGCAAATTTACAAATGCATTGTCACCCTGTTGGCGCATA
ACCTCATTAAGCTCAGCAAACTTGAATTGACGCCAAAGTTTCAATAAATC
TATCACAAATCCGTTCAACGTAAACACTGGGCCGCCAAAAACAGGAGGTA
ACTGATATAGATCACCACTAGCAATAACTGTCTTATTGGCAAACGGTATA
CGGTCAGATGTCCCAAATATGTCACAAAGGCGTTGGTGAATTTGCAGTAA
AGTCTGTGGACTCACCATGGATACTTCGTCAATGAAAATCACGCTAATGT
CTTGAAGTGTGagacgaaaattagttctttgTTTATCACTTAGTGGTAGA
AAACTGTGACGGGATAGACCCAGACCAGTATGTATTGTTGTACCATCAAT
ATTGATTGCAGCAACACCGGTTGGTGCCAATCGCAAGATTTTGGCTTNgc
cctaaacgagccgttttaagccaattttgggtagcaaaatgctttttaag

Coding sequence (CDS) from alignment at sc0000002:1761916..1762615

>TCONS_00000685 ID=TCONS_00000685|Name=TCONS_00000685|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at sc0000002:1761916..1762615 (Clytia hemisphaerica)
NAGTCCACGAGGGTATTGTTCAATggcaaaaatattgataatagGTGTTG
ACAATGTTTCAATCATTTTGTCATTGTGAGCTTTCACCACGCTGTTTTCT
GCAAATAAATGCAAAGCATCCCATGGGTAATTTGGATCATCTTGTGAAAT
AAATTTGGATCTCAAGATTCGTTCATCTTCTTCTGTTATTTTTCCTATTC
TAATGTTGTTCAGCAAATTTACAAATGCATTGTCACCCTGTTGGCGCATA
ACCTCATTAAGCTCAGCAAACTTGAATTGACGCCAAAGTTTCAATAAATC
TATCACAAATCCGTTCAACGTAAACACTGGGCCGCCAAAAACAGGAGGTA
ACTGATATAGATCACCACTAGCAATAACTGTCTTATTGGCAAACGGTATA
CGGTCAGATGTCCCAAATATGTCACAAAGGCGTTGGTGAATTTGCAGTAA
AGTCTGTGGACTCACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000431XLOC_000431Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000685-exon-sc0000002-1491911889:1761916..1762615TCONS_00000685-exon-sc0000002-1491911889:1761916..1762615Clytia hemisphaericaexon
TCONS_00000685-exon-sc0000002-1510915933:1761916..1762615TCONS_00000685-exon-sc0000002-1510915933:1761916..1762615Clytia hemisphaericaexon
TCONS_00000685-exon-sc0000002-1575043694:1761916..1762615TCONS_00000685-exon-sc0000002-1575043694:1761916..1762615Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000685-proteinTCONS_00000685-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1761916..1762615 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.26542	6.31735	5.26906	3.91037	4.50156	3.96671	3.31727	4.55433	3.12483	3.59182	2.88813	9.6686	3.80236	2.96959	2.63278	2.25686	1.47284	2.11835	2.0752	3.10424	5.18676	5.67923	1.05964	2.44514	3.55762	3.36203	5.44578	7.32839	5.63731	5.20635
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0000723telomere maintenance
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000723 telomere maintenance
molecular_function GO:0003678 DNA helicase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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