TCONS_00000683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000683
Unique NameTCONS_00000683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000683 ID=TCONS_00000683|Name=TCONS_00000683|organism=Clytia hemisphaerica|type=transcript|length=291bp
CATTGATCCAATTAGATGATTGGTCGATATCCTGGAATGTGGCTCCTCTT
CTGGTGCCAAGGTCTGCAAGGTTTTGATCTGTTGGAATGTAGTACCAATC
TTTCTTGTCCGAGAAACGAAGGATTTCTAAGACGCGACTTCGAACccact
ttttcaaaggtttgTCGTCATTGCTTATCAAGTACATTGCAATTTGGTTA
TCGGTCAGCTTGATAGAGGAATCATGAAGACTTTTCAATGATCGTTTAAC
GATTTCGCTTGTGTGAGTGTTTACAAGAGCAGCAAATAATT
Run BLAST on NCBI

transcript from alignment at sc0000002:1729808..1730098

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000683 ID=TCONS_00000683|Name=TCONS_00000683|organism=Clytia hemisphaerica|type=transcript|length=291bp|location=Sequence derived from alignment at sc0000002:1729808..1730098 (Clytia hemisphaerica)
AATTATTTGCTGCTCTTGTAAACACTCACACAAGCGAAATCGTTAAACGA
TCATTGAAAAGTCTTCATGATTCCTCTATCAAGCTGACCGATAACCAAAT
TGCAATGTACTTGATAAGCAATGACGAcaaacctttgaaaaagtggGTTC
GAAGTCGCGTCTTAGAAATCCTTCGTTTCTCGGACAAGAAAGATTGGTAC
TACATTCCAACAGATCAAAACCTTGCAGACCTTGGCACCAGAAGAGGAGC
CACATTCCAGGATATCGACCAATCATCTAATTGGATCAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000429XLOC_000429Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000683-exon-sc0000002-1491911889:1729808..1730098TCONS_00000683-exon-sc0000002-1491911889:1729808..1730098Clytia hemisphaericaexon
TCONS_00000683-exon-sc0000002-1510915933:1729808..1730098TCONS_00000683-exon-sc0000002-1510915933:1729808..1730098Clytia hemisphaericaexon
TCONS_00000683-exon-sc0000002-1575043694:1729808..1730098TCONS_00000683-exon-sc0000002-1575043694:1729808..1730098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1729808..1730098 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.89101	0	0.488091	0	0.581335	1.20144	0.554221	0.518855	0	0.899919	0.131206	0.287097	0.286698	0	0.734344	0.525376	0.837022	0	0.916495	2.09548	0.847561	0.819582	0	0	5.71575	2.47093	0.348275	0.630833	2.41877	0.914563
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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