TCONS_00000676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000676
Unique NameTCONS_00000676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000676 ID=TCONS_00000676|Name=TCONS_00000676|organism=Clytia hemisphaerica|type=transcript|length=544bp
TTGTGCGGTTTTCGAAAAGGTTATAGCACTCAACAtgccattttgaattt
gatcaGAGATTGGCAGAGTGCTATTgcaaataataaaaaagtgGGAGCGG
TCTTAATTGACTTATCGAAAGCCTTTGATTGTCTGCCCCATGATCTCTTG
TTAGCAAAACTTTCTGCTTATGGACTCGGTCAGAGTTCCATCAAATTAAT
GCACAGTTATTTAAGCAATAGAAAGCATCGGGTAGGTATAGGTTCTCATC
TTAGTTCATGGCTTGATATTTTGCTTGGAGTACCTCAAGGATCTATTTTA
GGACCTCtgttattcaatatttttattaatgatctattttattttatcaa
ggaaatttcaaattttgcagatgataATACTTTATCAACATCAGGTTCCA
ACATTGACGAGGTCAACTTAAACCTCTTACGTAAGCTGAGTGTTGTTCTT
GATTGGTTTAAGCATAACTCAATGGTTGCTAACCCCTCtaaatttcaatt
aatttatcCTGGTACTTTCAACGCAAATCTCTCTCTGTCTAGTG
Run BLAST on NCBI

protein sequence of TCONS_00000676-protein

>TCONS_00000676-protein ID=TCONS_00000676-protein|Name=TCONS_00000676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
LCGFRKGYSTQHAILNLIRDWQSAIANNKKVGAVLIDLSKAFDCLPHDLL
LAKLSAYGLGQSSIKLMHSYLSNRKHRVGIGSHLSSWLDILLGVPQGSIL
GPLLFNIFINDLFYFIKEISNFADDNTLSTSGSNIDEVNLNLLRKLSVVL
DWFKHNSMVANPSKFQLIYPGTFNANLSLSS
Run BLAST on NCBI

transcript from alignment at sc0000002:1661976..1662519

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000676 ID=TCONS_00000676|Name=TCONS_00000676|organism=Clytia hemisphaerica|type=transcript|length=544bp|location=Sequence derived from alignment at sc0000002:1661976..1662519 (Clytia hemisphaerica)
CACTAGACAGAGAGAGATTTGCGTTGAAAGTACCAGgataaattaattga
aatttaGAGGGGTTAGCAACCATTGAGTTATGCTTAAACCAATCAAGAAC
AACACTCAGCTTACGTAAGAGGTTTAAGTTGACCTCGTCAATGTTGGAAC
CTGATGTTGATAAAGTATtatcatctgcaaaatttgaaatttccttgata
aaataaaatagatcattaataaaaatattgaataacaGAGGTCCTAAAAT
AGATCCTTGAGGTACTCCAAGCAAAATATCAAGCCATGAACTAAGATGAG
AACCTATACCTACCCGATGCTTTCTATTGCTTAAATAACTGTGCATTAAT
TTGATGGAACTCTGACCGAGTCCATAAGCAGAAAGTTTTGCTAACAAGAG
ATCATGGGGCAGACAATCAAAGGCTTTCGATAAGTCAATTAAGACCGCTC
CcacttttttattatttgcAATAGCACTCTGCCAATCTCtgatcaaattc
aaaatggcaTGTTGAGTGCTATAACCTTTTCGAAAACCGCACAA

Coding sequence (CDS) from alignment at sc0000002:1661976..1662519

>TCONS_00000676 ID=TCONS_00000676|Name=TCONS_00000676|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0000002:1661976..1662519 (Clytia hemisphaerica)
ACTAGACAGAGAGAGATTTGCGTTGAAAGTACCAGgataaattaattgaa
atttaGAGGGGTTAGCAACCATTGAGTTATGCTTAAACCAATCAAGAACA
ACACTCAGCTTACGTAAGAGGTTTAAGTTGACCTCGTCAATGTTGGAACC
TGATGTTGATAAAGTATtatcatctgcaaaatttgaaatttccttgataa
aataaaatagatcattaataaaaatattgaataacaGAGGTCCTAAAATA
GATCCTTGAGGTACTCCAAGCAAAATATCAAGCCATGAACTAAGATGAGA
ACCTATACCTACCCGATGCTTTCTATTGCTTAAATAACTGTGCATTAATT
TGATGGAACTCTGACCGAGTCCATAAGCAGAAAGTTTTGCTAACAAGAGA
TCATGGGGCAGACAATCAAAGGCTTTCGATAAGTCAATTAAGACCGCTCC
cacttttttattatttgcAATAGCACTCTGCCAATCTCtgatcaaattca
aaatggcaTGTTGAGTGCTATAACCTTTTCGAAAACCGCACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000422XLOC_000422Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000676-exon-sc0000002-1491911889:1661976..1662519TCONS_00000676-exon-sc0000002-1491911889:1661976..1662519Clytia hemisphaericaexon
TCONS_00000676-exon-sc0000002-1510915933:1661976..1662519TCONS_00000676-exon-sc0000002-1510915933:1661976..1662519Clytia hemisphaericaexon
TCONS_00000676-exon-sc0000002-1575043694:1661976..1662519TCONS_00000676-exon-sc0000002-1575043694:1661976..1662519Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000676-proteinTCONS_00000676-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1661976..1662519 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.211807	0.206546	0.239819	0.117313	0.142817	0	1.2254	0.382403	0.624701	1.10542	0.536473	0.987438	0.0704332	0	0	0.0645347	0	0.0814865	0	0	0.102394	0	0	0	0	0.101478	0.145215	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top