TCONS_00000662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000662
Unique NameTCONS_00000662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000662 ID=TCONS_00000662|Name=TCONS_00000662|organism=Clytia hemisphaerica|type=transcript|length=314bp
ACTCTTGTCAGAATTGGAATCTGACCGCAGCGCAATTTGATAAGCTTGAT
TCAACGTACAGAAGTCTACTTCGCAAAATGATACGACGTGGTTTCAGTCG
AGTCAATACTGAAGAAGGAGACTTTCGATTAAAAATTAATAACGCTAAGC
TCCATTCTATCTGCCATACTGAAGACGTCAGTAATTTCATTCGAAAACAG
CAAAAGAATTATGCAGGACATGTCGTTCGAATGTCTGTAGATCGTGGTAT
TAAACAGTTAATGTTTAATTCCGATAAATATCATAGAATCGGAAGAACAA
CTCCCTCTCTCCTA
Run BLAST on NCBI

protein sequence of TCONS_00000662-protein

>TCONS_00000662-protein ID=TCONS_00000662-protein|Name=TCONS_00000662-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
SCQNWNLTAAQFDKLDSTYRSLLRKMIRRGFSRVNTEEGDFRLKINNAKL
HSICHTEDVSNFIRKQQKNYAGHVVRMSVDRGIKQLMFNSDKYHRIGRTT
PSLL
Run BLAST on NCBI

transcript from alignment at sc0000002:1310104..1310417

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000662 ID=TCONS_00000662|Name=TCONS_00000662|organism=Clytia hemisphaerica|type=transcript|length=314bp|location=Sequence derived from alignment at sc0000002:1310104..1310417 (Clytia hemisphaerica)
TAGGAGAGAGGGAGTTGTTCTTCCGATTCTATGATATTTATCGGAATTAA
ACATTAACTGTTTAATACCACGATCTACAGACATTCGAACGACATGTCCT
GCATAATTCTTTTGCTGTTTTCGAATGAAATTACTGACGTCTTCAGTATG
GCAGATAGAATGGAGCTTAGCGTTATTAATTTTTAATCGAAAGTCTCCTT
CTTCAGTATTGACTCGACTGAAACCACGTCGTATCATTTTGCGAAGTAGA
CTTCTGTACGTTGAATCAAGCTTATCAAATTGCGCTGCGGTCAGATTCCA
ATTCTGACAAGAGT

Coding sequence (CDS) from alignment at sc0000002:1310104..1310417

>TCONS_00000662 ID=TCONS_00000662|Name=TCONS_00000662|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000002:1310104..1310417 (Clytia hemisphaerica)
TAGGAGAGAGGGAGTTGTTCTTCCGATTCTATGATATTTATCGGAATTAA
ACATTAACTGTTTAATACCACGATCTACAGACATTCGAACGACATGTCCT
GCATAATTCTTTTGCTGTTTTCGAATGAAATTACTGACGTCTTCAGTATG
GCAGATAGAATGGAGCTTAGCGTTATTAATTTTTAATCGAAAGTCTCCTT
CTTCAGTATTGACTCGACTGAAACCACGTCGTATCATTTTGCGAAGTAGA
CTTCTGTACGTTGAATCAAGCTTATCAAATTGCGCTGCGGTCAGATTCCA
ATTCTGACAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000408XLOC_000408Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000662-exon-sc0000002-1491911889:1310104..1310417TCONS_00000662-exon-sc0000002-1491911889:1310104..1310417Clytia hemisphaericaexon
TCONS_00000662-exon-sc0000002-1510915933:1310104..1310417TCONS_00000662-exon-sc0000002-1510915933:1310104..1310417Clytia hemisphaericaexon
TCONS_00000662-exon-sc0000002-1575043694:1310104..1310417TCONS_00000662-exon-sc0000002-1575043694:1310104..1310417Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000662-proteinTCONS_00000662-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1310104..1310417 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.788725	0.837435	0	5.23859	0.600761	0	0.569388	0	0	0.759312	0.900771	0	0.92114	0.364546	0.717176	0.782799	0	0.431732	2.31738	3.28907	3.23407	3.5734	0	1.80581	0	0	3.33287	2.43248	3.1781	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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