TCONS_00000659 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000659
Unique NameTCONS_00000659
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000659 ID=TCONS_00000659|Name=TCONS_00000659|organism=Clytia hemisphaerica|type=transcript|length=1740bp
AACAGAACTAATTCACCCATAaataaaaagtcataaaaaactATGTaggt
aataaaataaaaataccaaaataaataaaaatattcaaaataataaatga
aaataaaaatctataTATTACATACATTCTTATAATAGTCACCATAAAAG
TTCACcataaaaaaagtgttttaccATACATACCAATagtctttttaaaa
tttcacagttctagtgaaacaaacaaaatgatCAAGGCAAAATCCAATGT
AATTAATCTCATTAAAactcattttaaaaatttcttaagTGACTCAATTT
GtgataaaataacatttttggaGGTCCCACCAATTGATGTATACTGATTG
ACGCTCACATCATAATTCCAAATATCTTTGTAATCTACATAAAAAAGGTT
GTTGATTGATTTCATATCATCTAAAGATAATTCAGAAACCTCAATCTTCT
TTTGTTCAGCTAATTGAACGACAGAGCCTGCTACAGCATGAGCTTCTCTG
AATGGCATTCCCTTGCGGACAAGATAATATGCAACATCAGTAGAAAGCAT
CTCAGGGCTGAGAGCAGCCAAACATTTATCAGCATTGAGTGTAAGTGTGC
CCAGTGTTCCAGTGGCTACTTGGATAATTCCCTTGAGAGAATCAACAGTA
TCAAACAGCGCTTCTTTATCCTCTTGTAAATCTTTGTTGTAAGTGCTTGG
TAGACCTTTCAAAGTCATCATAAATCcactaaaattaccaaaaagtcGTC
CAGATTTTCCACGAATCAACTCCAGACTATCAGGATTCTTTTTTTGAGGC
ATCAGACTACTACCAGTGCTGTAAGCATCTGAAATGGTAACAAATCCGAA
TTCCTTGCTACTATAAATGATCAAATCTTCACTCCATTGACTCAAATGAT
TCATTAATAAAGAACTCCAAAATAAGAATTCAGCAACAAAATCACGGCTT
TTTGTGCCATACAAGCTATTTTGTATGACGGATGAGAATCCTAACTCTTC
AGCTAAAAACTGACGATCGATTCCAAAAGGGTTGCCAGCTATTGCTCCAC
AACCCAATGGGAGTGAATTCACTCTTGAAAATAACCCATCTAATCGTTCC
AAATCTTCCTTTAATGCCCAACAATGACTCAACAGCCATTGACTCCAGCA
TATTGGTTGGGCTCTTTGTAAATGTGTATACCCTGGCATAATCACATCTA
TTTCACTCTCTGATCTTTCAACAAAGACCTGAATAAGGGAGAGTAAAAGA
TCTTTGATAACCTGTATCTGTTTTCTCAACCAGAGTCTGGTATCTGTTGC
TACTTGGTCATTTCTACTGCGTCCAGTATGAAGCTTTCCTGCAACAGAAC
CAATCAATTCTTTTAAACGCCTCTCATTGGCAGTGTGAATATCTTCATCT
GATGGTTGTATCACAAATTTGTTATCCTTCCATTCTGTGGCGACCTTGTT
CAATCCTTCAATCAAGGTTTCCTTTTCATcatttgaaatgatttgaattt
tttccaaTCCTTTTGCATAAGCAATGCTCCCAGCAATATCCTCTTCCCAC
ATTCTTTTATCAATGTTTATAGAGGCATTGAATTCTTCCATTACTGGGTC
GGTTTTACCAGAAAAACGACCACCCCAAAGTTTCTTTGATTCCTCGCCCA
TTTTCAGGTGACTTTTAgttatttttcactgaaatgtTAATGTGAAGAAA
ATTTCAATGGGACTGAGGTTTATAAAGTCATGgaaagaaa
Run BLAST on NCBI

protein sequence of TCONS_00000659-protein

>TCONS_00000659-protein ID=TCONS_00000659-protein|Name=TCONS_00000659-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
MGEESKKLWGGRFSGKTDPVMEEFNASINIDKRMWEEDIAGSIAYAKGLE
KIQIISNDEKETLIEGLNKVATEWKDNKFVIQPSDEDIHTANERRLKELI
GSVAGKLHTGRSRNDQVATDTRLWLRKQIQVIKDLLLSLIQVFVERSESE
IDVIMPGYTHLQRAQPICWSQWLLSHCWALKEDLERLDGLFSRVNSLPLG
CGAIAGNPFGIDRQFLAEELGFSSVIQNSLYGTKSRDFVAEFLFWSSLLM
NHLSQWSEDLIIYSSKEFGFVTISDAYSTGSSLMPQKKNPDSLELIRGKS
GRLFGNFSGFMMTLKGLPSTYNKDLQEDKEALFDTVDSLKGIIQVATGTL
GTLTLNADKCLAALSPEMLSTDVAYYLVRKGMPFREAHAVAGSVVQLAEQ
KKIEVSELSLDDMKSINNLFYVDYKDIWNYDVSVNQYTSIGGTSKNVILS
QIESLKKFLK
Run BLAST on NCBI

transcript from alignment at sc0000002:1216165..1217904

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000659 ID=TCONS_00000659|Name=TCONS_00000659|organism=Clytia hemisphaerica|type=transcript|length=1740bp|location=Sequence derived from alignment at sc0000002:1216165..1217904 (Clytia hemisphaerica)
tttctttcCATGACTTTATAAACCTCAGTCCCATTGAAATTTTCTTCACA
TTAacatttcagtgaaaaataacTAAAAGTCACCTGAAAATGGGCGAGGA
ATCAAAGAAACTTTGGGGTGGTCGTTTTTCTGGTAAAACCGACCCAGTAA
TGGAAGAATTCAATGCCTCTATAAACATTGATAAAAGAATGTGGGAAGAG
GATATTGCTGGGAGCATTGCTTATGCAAAAGGAttggaaaaaattcaaat
catttcaaatgATGAAAAGGAAACCTTGATTGAAGGATTGAACAAGGTCG
CCACAGAATGGAAGGATAACAAATTTGTGATACAACCATCAGATGAAGAT
ATTCACACTGCCAATGAGAGGCGTTTAAAAGAATTGATTGGTTCTGTTGC
AGGAAAGCTTCATACTGGACGCAGTAGAAATGACCAAGTAGCAACAGATA
CCAGACTCTGGTTGAGAAAACAGATACAGGTTATCAAAGATCTTTTACTC
TCCCTTATTCAGGTCTTTGTTGAAAGATCAGAGAGTGAAATAGATGTGAT
TATGCCAGGGTATACACATTTACAAAGAGCCCAACCAATATGCTGGAGTC
AATGGCTGTTGAGTCATTGTTGGGCATTAAAGGAAGATTTGGAACGATTA
GATGGGTTATTTTCAAGAGTGAATTCACTCCCATTGGGTTGTGGAGCAAT
AGCTGGCAACCCTTTTGGAATCGATCGTCAGTTTTTAGCTGAAGAGTTAG
GATTCTCATCCGTCATACAAAATAGCTTGTATGGCACAAAAAGCCGTGAT
TTTGTTGCTGAATTCTTATTTTGGAGTTCTTTATTAATGAATCATTTGAG
TCAATGGAGTGAAGATTTGATCATTTATAGTAGCAAGGAATTCGGATTTG
TTACCATTTCAGATGCTTACAGCACTGGTAGTAGTCTGATGCCTCAAAAA
AAGAATCCTGATAGTCTGGAGTTGATTCGTGGAAAATCTGGACgactttt
tggtaattttagtgGATTTATGATGACTTTGAAAGGTCTACCAAGCACTT
ACAACAAAGATTTACAAGAGGATAAAGAAGCGCTGTTTGATACTGTTGAT
TCTCTCAAGGGAATTATCCAAGTAGCCACTGGAACACTGGGCACACTTAC
ACTCAATGCTGATAAATGTTTGGCTGCTCTCAGCCCTGAGATGCTTTCTA
CTGATGTTGCATATTATCTTGTCCGCAAGGGAATGCCATTCAGAGAAGCT
CATGCTGTAGCAGGCTCTGTCGTTCAATTAGCTGAACAAAAGAAGATTGA
GGTTTCTGAATTATCTTTAGATGATATGAAATCAATCAACAACCTTTTTT
ATGTAGATTACAAAGATATTTGGAATTATGATGTGAGCGTCAATCAGTAT
ACATCAATTGGTGGGACCtccaaaaatgttattttatcaCAAATTGAGTC
ActtaagaaatttttaaaatgagtTTTAATGAGATTAATTACATTGGATT
TTGCCTTGatcattttgtttgtttcactagaactgtgaaattttaaaaag
actATTGGTATGTATggtaaaacactttttttatgGTGAACTTTTATGGT
GACTATTATAAGAATGTATGTAATAtatagatttttattttcatttatta
ttttgaatatttttatttattttggtatttttattttattacctACATag
ttttttatgactttttattTATGGGTGAATTAGTTCTGTT

Coding sequence (CDS) from alignment at sc0000002:1216165..1217904

>TCONS_00000659 ID=TCONS_00000659|Name=TCONS_00000659|organism=Clytia hemisphaerica|type=CDS|length=1383bp|location=Sequence derived from alignment at sc0000002:1216165..1217904 (Clytia hemisphaerica)
ATGGGCGAGGAATCAAAGAAACTTTGGGGTGGTCGTTTTTCTGGTAAAAC
CGACCCAGTAATGGAAGAATTCAATGCCTCTATAAACATTGATAAAAGAA
TGTGGGAAGAGGATATTGCTGGGAGCATTGCTTATGCAAAAGGAttggaa
aaaattcaaatcatttcaaatgATGAAAAGGAAACCTTGATTGAAGGATT
GAACAAGGTCGCCACAGAATGGAAGGATAACAAATTTGTGATACAACCAT
CAGATGAAGATATTCACACTGCCAATGAGAGGCGTTTAAAAGAATTGATT
GGTTCTGTTGCAGGAAAGCTTCATACTGGACGCAGTAGAAATGACCAAGT
AGCAACAGATACCAGACTCTGGTTGAGAAAACAGATACAGGTTATCAAAG
ATCTTTTACTCTCCCTTATTCAGGTCTTTGTTGAAAGATCAGAGAGTGAA
ATAGATGTGATTATGCCAGGGTATACACATTTACAAAGAGCCCAACCAAT
ATGCTGGAGTCAATGGCTGTTGAGTCATTGTTGGGCATTAAAGGAAGATT
TGGAACGATTAGATGGGTTATTTTCAAGAGTGAATTCACTCCCATTGGGT
TGTGGAGCAATAGCTGGCAACCCTTTTGGAATCGATCGTCAGTTTTTAGC
TGAAGAGTTAGGATTCTCATCCGTCATACAAAATAGCTTGTATGGCACAA
AAAGCCGTGATTTTGTTGCTGAATTCTTATTTTGGAGTTCTTTATTAATG
AATCATTTGAGTCAATGGAGTGAAGATTTGATCATTTATAGTAGCAAGGA
ATTCGGATTTGTTACCATTTCAGATGCTTACAGCACTGGTAGTAGTCTGA
TGCCTCAAAAAAAGAATCCTGATAGTCTGGAGTTGATTCGTGGAAAATCT
GGACgactttttggtaattttagtgGATTTATGATGACTTTGAAAGGTCT
ACCAAGCACTTACAACAAAGATTTACAAGAGGATAAAGAAGCGCTGTTTG
ATACTGTTGATTCTCTCAAGGGAATTATCCAAGTAGCCACTGGAACACTG
GGCACACTTACACTCAATGCTGATAAATGTTTGGCTGCTCTCAGCCCTGA
GATGCTTTCTACTGATGTTGCATATTATCTTGTCCGCAAGGGAATGCCAT
TCAGAGAAGCTCATGCTGTAGCAGGCTCTGTCGTTCAATTAGCTGAACAA
AAGAAGATTGAGGTTTCTGAATTATCTTTAGATGATATGAAATCAATCAA
CAACCTTTTTTATGTAGATTACAAAGATATTTGGAATTATGATGTGAGCG
TCAATCAGTATACATCAATTGGTGGGACCtccaaaaatgttattttatca
CAAATTGAGTCActtaagaaatttttaaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000405XLOC_000405Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000659-proteinTCONS_00000659-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000659-exon-sc0000002-1491911889:1216165..1217904TCONS_00000659-exon-sc0000002-1491911889:1216165..1217904Clytia hemisphaericaexon
TCONS_00000659-exon-sc0000002-1510915933:1216165..1217904TCONS_00000659-exon-sc0000002-1510915933:1216165..1217904Clytia hemisphaericaexon
TCONS_00000659-exon-sc0000002-1575043694:1216165..1217904TCONS_00000659-exon-sc0000002-1575043694:1216165..1217904Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1216165..1217904 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.15152	2.86985	1.57425	1.33481	5.46875	3.45718	6.67351	7.41909	10.4667	10.7878	7.231	7.29983	6.9198	5.42572	10.7241	10.4495	14.4559	13.8362	3.9167	3.71189	8.15538	7.77004	4.67625	5.53164	9.47918	16.3426	12.4874	9.05418	5.01543	4.48101
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000362Fumarate_lyase_fam
IPR009049Argininosuccinate_lyase
IPR022761Fumarate_lyase_N
IPR029419Arg_succ_lyase_C
IPR024083Fumarase/histidase_N
IPR020557Fumarate_lyase_CS
IPR008948L-Aspartase-like
Vocabulary: Molecular Function
TermDefinition
GO:0004056argininosuccinate lyase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0042450arginine biosynthetic process via ornithine
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042450 arginine biosynthetic process via ornithine
molecular_function GO:0004056 argininosuccinate lyase activity
molecular_function GO:0003824 catalytic activity
Blast
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BLAST of TCONS_00000659 vs. Swiss-Prot (Human)
Match: ARLY (Argininosuccinate lyase OS=Homo sapiens GN=ASL PE=1 SV=4)

HSP 1 Score: 560.836 bits (1444), Expect = 0.000e+0
Identity = 266/460 (57.83%), Postives = 345/460 (75.00%), Query Frame = -3 
Query:  272 MGEESKKLWGGRFSGKTDPVMEEFNASINIDKRMWEEDIAGSIAYAKGLEKIQIISNDEKETLIEGLNKVATEWKDNKFVIQPSDEDIHTANERRLKELIGSVAGKLHTGRSRNDQVATDTRLWLRKQIQVIKDLLLSLIQVFVERSESEIDVIMPGYTHLQRAQPICWSQWLLSHCWALKEDLERLDGLFSRVNSLPLGCGAIAGNPFGIDRQFLAEELGFSSVIQNSLYGTKSRDFVAEFLFWSSLLMNHLSQWSEDLIIYSSKEFGFVTISDAYSTGSSLMPQKKNPDSLELIRGKSGRLFGNFSGFMMTLKGLPSTYNKDLQEDKEALFDTVDSLKGIIQVAXXXXXXXXLNADKCLAALSPEMLSTDVAYYLVRKGMPFREAHAVAGSVVQLAEQKKIEVSELSLDDMKSINNLFYVDYKDIWNYDVSVNQYTSIGGTSKNVILSQIESLKKFLK 1651
            M  ES KLWGGRF G  DP+ME+FNASI  D+ +WE D+ GS AY++GLEK  +++  E + ++ GL+KVA EW    F +  +DEDIHTANERRLKELIG+ AGKLHTGRSRNDQV TD RLW+R+    +  LL  LI+  V+R+E+E DV+ PGYTHLQRAQPI WS W+LSH  AL  D ERL  +  R+N LPLG GAIAGNP G+DR+ L  EL F ++  NS+  T  RDFVAEFLFW+SL M HLS+ +EDLI+Y +KEF FV +SDAYSTGSSLMPQKKNPDSLELIR K+GR+FG  +G +MTLKGLPSTYNKDLQEDKEA+F+  D++  ++QVATG + TL ++ +    ALSP+ML+TD+AYYLVRKGMPFR+AH  +G  V +AE K + +++LSL ++++I+ LF  D   +W+Y  SV QY ++GGT+++ +  QI  ++  L+
Sbjct:    1 MASESGKLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHGLDKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALTRDSERLLEVRKRINVLPLGSGAIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFWASLCMTHLSRMAEDLILYCTKEFSFVQLSDAYSTGSSLMPQKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTYNKDLQEDKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQALSPDMLATDLAYYLVRKGMPFRQAHEASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYGHSVEQYGALGGTARSSVDWQIRQVRALLQ 460
The following BLAST results are available for this feature:
BLAST of TCONS_00000659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARLY0.000e+057.83Argininosuccinate lyase OS=Homo sapiens GN=ASL PE=... [more]
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