TCONS_00000658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000658
Unique NameTCONS_00000658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1051

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000658 ID=TCONS_00000658|Name=TCONS_00000658|organism=Clytia hemisphaerica|type=transcript|length=1051bp
tctacaaaaattgtttgtttttcttacCAGTTTTGGTTACATAGTTATAG
ATTTAGATTTTAGCACACAAATACATAGTGTTCGCTGTCCACAAGTTCTT
TGATCTTTGGTTTTATAACAGATTAAAAATgtattattaaattttttatt
attaatcATCAGTATTATTAAATTAGACCAACTGTTAGTAAATGGAAAGC
TCACACAATTCAACAGCAACTGATGCATcgggaaatgaaaatgaaattcc
tcCTTGCTTGGAAAGCTCAAAAGAACTATCAAAAGGTGTATTAGAACTTT
ATCAGAATGATTTGAAACCAGTGCAAGACAATGTTACAGAGCTGCTCAGA
AATCAAGGGGTATTACGAGACATTACACAAAACGAAATAACACAAgtcaa
agaaaatattatgtTGGCCGAGATCACTGACacttttgaaacaatgaaat
tatatcaaaagaaaCTGGTTGCAATGAAAAAAGAGATGAACAATTTAACT
TCAAGGATAGATAAGTTTAAAATCAGAGCACAGAAACTTCAATTACAAAA
AGAGAGAGAGGAATTGGAATCTGCAAAGGAGAAAGAACGACAACGTAAAT
ATGAACGAGATTTGACAGCTAAACCGGCACAATCCACTGGTGCTACTTCC
AAGTAATTTTAAGTACATGATTTAACATGGGTGGTGTATCTTGTTGAAAC
TTTGGTTGAGAAATTGGTAGATACTTGatatattgataatttttcctttt
ttatattttcacaaAAGTATTAAAAGTCTTGGACCTGATTTCTAGTAGGA
CGATCTTTTATATCACTTTTactaaatgtatttttttaatttattatata
TAAATTAGTACTATATTTTGGTGGatttatttgaatttaaaatactAAAT
TTAGTTTACAAACAAATTAAAGAAGAATAATCTCTATTTAAAAGTTATGC
ATAATTATTTCGATAATTGATATAAATTTTACAATAGAAATAACCTGAAA
AGTAGCAGCATCCTTCTTGAAAATACTTGATGTTGGTTTCTTTTATCGCC
A
Run BLAST on NCBI

protein sequence of TCONS_00000658-protein

>TCONS_00000658-protein ID=TCONS_00000658-protein|Name=TCONS_00000658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MESSHNSTATDASGNENEIPPCLESSKELSKGVLELYQNDLKPVQDNVTE
LLRNQGVLRDITQNEITQVKENIMLAEITDTFETMKLYQKKLVAMKKEMN
NLTSRIDKFKIRAQKLQLQKEREELESAKEKERQRKYERDLTAKPAQSTG
ATSK
Run BLAST on NCBI

transcript from alignment at sc0000002:1203472..1204522

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000658 ID=TCONS_00000658|Name=TCONS_00000658|organism=Clytia hemisphaerica|type=transcript|length=1051bp|location=Sequence derived from alignment at sc0000002:1203472..1204522 (Clytia hemisphaerica)
TGGCGATAAAAGAAACCAACATCAAGTATTTTCAAGAAGGATGCTGCTAC
TTTTCAGGTTATTTCTATTGTAAAATTTATATCAATTATCGAAATAATTA
TGCATAACTTTTAAATAGAGATTATTCTTCTTTAATTTGTTTGTAAACTA
AATTTagtattttaaattcaaataaatCCACCAAAATATAGTACTAATTT
AtatataataaattaaaaaaatacatttagtAAAAGTGATATAAAAGATC
GTCCTACTAGAAATCAGGTCCAAGACTTTTAATACTTttgtgaaaatata
aaaaaggaaaaattatcaatatatCAAGTATCTACCAATTTCTCAACCAA
AGTTTCAACAAGATACACCACCCATGTTAAATCATGTACTTAAAATTACT
TGGAAGTAGCACCAGTGGATTGTGCCGGTTTAGCTGTCAAATCTCGTTCA
TATTTACGTTGTCGTTCTTTCTCCTTTGCAGATTCCAATTCCTCTCTCTC
TTTTTGTAATTGAAGTTTCTGTGCTCTGATTTTAAACTTATCTATCCTTG
AAGTTAAATTGTTCATCTCTTTTTTCATTGCAACCAGtttcttttgatat
aatttcattgtttcaaaagtGTCAGTGATCTCGGCCAacataatattttc
tttgacTTGTGTTATTTCGTTTTGTGTAATGTCTCGTAATACCCCTTGAT
TTCTGAGCAGCTCTGTAACATTGTCTTGCACTGGTTTCAAATCATTCTGA
TAAAGTTCTAATACACCTTTTGATAGTTCTTTTGAGCTTTCCAAGCAAGg
aggaatttcattttcatttcccgATGCATCAGTTGCTGTTGAATTGTGTG
AGCTTTCCATTTACTAACAGTTGGTCTAATTTAATAATACTGATgattaa
taataaaaaatttaataatacATTTTTAATCTGTTATAAAACCAAAGATC
AAAGAACTTGTGGACAGCGAACACTATGTATTTGTGTGCTAAAATCTAAA
TCTATAACTATGTAACCAAAACTGgtaagaaaaacaaacaatttttgtag
a

Coding sequence (CDS) from alignment at sc0000002:1203472..1204522

>TCONS_00000658 ID=TCONS_00000658|Name=TCONS_00000658|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000002:1203472..1204522 (Clytia hemisphaerica)
TTACTTGGAAGTAGCACCAGTGGATTGTGCCGGTTTAGCTGTCAAATCTC
GTTCATATTTACGTTGTCGTTCTTTCTCCTTTGCAGATTCCAATTCCTCT
CTCTCTTTTTGTAATTGAAGTTTCTGTGCTCTGATTTTAAACTTATCTAT
CCTTGAAGTTAAATTGTTCATCTCTTTTTTCATTGCAACCAGtttctttt
gatataatttcattgtttcaaaagtGTCAGTGATCTCGGCCAacataata
ttttctttgacTTGTGTTATTTCGTTTTGTGTAATGTCTCGTAATACCCC
TTGATTTCTGAGCAGCTCTGTAACATTGTCTTGCACTGGTTTCAAATCAT
TCTGATAAAGTTCTAATACACCTTTTGATAGTTCTTTTGAGCTTTCCAAG
CAAGgaggaatttcattttcatttcccgATGCATCAGTTGCTGTTGAATT
GTGTGAGCTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000404XLOC_000404Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000658-proteinTCONS_00000658-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000658-exon-sc0000002-1491911889:1203472..1204522TCONS_00000658-exon-sc0000002-1491911889:1203472..1204522Clytia hemisphaericaexon
TCONS_00000658-exon-sc0000002-1510915933:1203472..1204522TCONS_00000658-exon-sc0000002-1510915933:1203472..1204522Clytia hemisphaericaexon
TCONS_00000658-exon-sc0000002-1575043694:1203472..1204522TCONS_00000658-exon-sc0000002-1575043694:1203472..1204522Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1203472..1204522 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
57.1352	52.1822	12.8333	9.19485	25.2288	18.3197	22.4811	23.7851	19.9546	19.8792	14.0445	9.4568	7.00568	6.95535	11.0776	12.6326	17.2071	13.8759	7.34565	10.8739	11.7735	10.2534	51.4032	47.831	15.5621	18.8144	16.0038	12.2703	25.7217	26.4445
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028119Snapin/Pallidin/Snn1
IPR017242BLOC-1_pallidin
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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