TCONS_00000655 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000655
Unique NameTCONS_00000655
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000655 ID=TCONS_00000655|Name=TCONS_00000655|organism=Clytia hemisphaerica|type=transcript|length=510bp
tggccatcgaagccttgtgttcttgtAGTCAAGAATGGAGTCATTTTGTC
ACTCGTTGGTTTTTTCCTTGCTGTGTTTATTATGTTCTATATTTACCAGT
CagtgagaaaaaaagaagatttttgctGAGTGCTgaacaaataatatttt
caacgtAGAAATACAGTAAAAGTATATAGTGTATGAGTGACTAGGtatca
aaagtaaaaaatcttACAATATAAGTGAATAATAAAAAAAGGATAAAATC
ATAGAATAAGCTTTAGAATGTTTGTATATTATTTTCACATGGTTTGTTGT
AGTAATATGCTATGATGCAACTCCTGCATCTCCTTCAATGAAGCATCTTG
TGGGTAACTCGACCTTCGTCACATACCTCCATTGTATCAGTAGTCACCTT
TAACTGAAAAATAGAATTTACTTTAAAGTTTCATGCTTAAtgctagacga
tgctatcgtccgtttaaaagtcagtaaacgcgggaaagagttagggcgta
AGGGCGGTTT
Run BLAST on NCBI

transcript from alignment at sc0000002:1097240..1097749

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000655 ID=TCONS_00000655|Name=TCONS_00000655|organism=Clytia hemisphaerica|type=transcript|length=510bp|location=Sequence derived from alignment at sc0000002:1097240..1097749 (Clytia hemisphaerica)
AAACCGCCCTtacgccctaactctttcccgcgtttactgacttttaaacg
gacgatagcatcgtctagcaTTAAGCATGAAACTTTAAAGTAAATTCTAT
TTTTCAGTTAAAGGTGACTACTGATACAATGGAGGTATGTGACGAAGGTC
GAGTTACCCACAAGATGCTTCATTGAAGGAGATGCAGGAGTTGCATCATA
GCATATTACTACAACAAACCATGTGAAAATAATATACAAACATTCTAAAG
CTTATTCTATGATTTTATCCTTTTTTTATTATTCACTTATATTGTaagat
tttttacttttgataCCTAGTCACTCATACACTATATACTTTTACTGTAT
TTCTacgttgaaaatattatttgttcAGCACTCagcaaaaatcttctttt
tttctcactGACTGGTAAATATAGAACATAATAAACACAGCAAGGAAAAA
ACCAACGAGTGACAAAATGACTCCATTCTTGACTacaagaacacaaggct
tcgatggcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000401XLOC_000401Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000655-exon-sc0000002-1491911889:1097240..1097749TCONS_00000655-exon-sc0000002-1491911889:1097240..1097749Clytia hemisphaericaexon
TCONS_00000655-exon-sc0000002-1510915933:1097240..1097749TCONS_00000655-exon-sc0000002-1510915933:1097240..1097749Clytia hemisphaericaexon
TCONS_00000655-exon-sc0000002-1575043694:1097240..1097749TCONS_00000655-exon-sc0000002-1575043694:1097240..1097749Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1097240..1097749 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.76799	2.4137	1.06763	1.17508	0	0	0.151536	0.283732	2.28444	1.96845	2.38829	1.96246	1.17584	1.62816	1.33857	3.2321	156.967	131.593	1.12765	1.18	0.683759	1.66757	1.35143	1.10578	0	0	30.5458	1.72483	0.915756	1.0663
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000655 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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