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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000625 ID=TCONS_00000625|Name=TCONS_00000625|organism=Clytia hemisphaerica|type=transcript|length=2026bp
ATTcgacaaaaagttgatttttttcttcttcatttttcattttcattttc
caaatttttttgatttttttctgttttataaCATTCCCACTCCTTATTGT
CTTTTCAaaaagcacaaaaccgctagtTAATTcgaattttaccaaaattt
acAGCCTGTTGATAAGCGTACCGTTTCGGAAAAGATTATCTTAGTTGACA
AGGATGAAATTGTAAATAGTGATTCTACTACAGCTGAACTTTTTGATACT
TATTTCAATGGTATAACTAAGACACTGGACATATATCAGTGGTCGCAATA
TGCCGAGCCGATCTACGACGATCCGGTGCTCAATACTCAGATCATCCTAg
cattataaaaatcaaaagtatTTTAGCTGGTAACTCTCCTTCGAGTTTAC
AAAAACTGACACTGAAACTGTCCACAAATTAGTTATGTCATTGAATAGTA
AAAAATCTACATCTGGGGAAATAAGCACCAAAATCCTACAGAAGTCTGCT
AATATCTGTTCTTTTGCACTCAAAGATTGCTTCACCTCTTGTCTCGACAA
GACTATTTTCCTGGAATCCTTAAAACGAGCTACAATTACCCCGGTTCTTA
AAGAAGGCAATCCGACGAGTGTTAAAAACTACAGACCTATTAGCATACTT
CCTACAGTATCCAaagtatttgaaaaaatcattgccCAACAATTAAatcc
ttttttagaaaactgtTTTTTCAGATTTACTGTGTGGCTTTCGAAAAGAA
CATACAGTACACAACATGCTCTATTGCGATTATTACATCTCTGGCAAAGG
GCACTTGATGATTCAAATATTGTGGGTACAATACTTATGGATTTATCAAA
AGCTTACGATtgtttaccccctgatttactTATTGCAAAATTAGCAGCAT
ATGGTGTTAACCACAATAGTCTACTCTTTATATATGATTATTTGATAAAC
CGTTACCATAGagtcaaaattggaaatagtCTGAGTAGCTTCTTATCTAT
TAGTATGGGCGTCCCTCAGGGATCCATTTTAGGCCCAATtctttttaaca
tatttttgaaTAATCTCTTACTATCTGACCTTGAAGCAGAACTCTGTAAC
TTTGCTGATGACAACACCCTTTTCGCAATCGCTAAAGCCCTTGCTGAAAT
TATCGAAATTCAAGATATTTTGTACTGGGGTAAAATCAATGGGCTTGTTG
CCAATCCAGGAAAGTTCGAAGTTATGTTTCTTGGTAGATTTGAGCCTATA
TCTACTTTTAATATAGGAAATATCaaagttaaagttaaaaatCAGGTCAA
ACTTTTAGGTATCTAATATTGTTAAATCTTTATATTGATAATAACTTTAA
CTCCCACGTTGAATTAAAATGCCAGTCGGTGGGAAATAAAATCAGCGTTC
TTCGGCGCATCCGTCCCTTCGTTTCTCTTAAAACAGCGAAGGCCTTGTTC
CACGCctatattttttctaattttaattaTTGTCCATTAATTTGGATGAA
TTTTGTAAAACACAACaacaaacaaattgaaaaaattcaacgAAGAGCTC
TTAGCGTAGTTTATGAAAACTATGACTCTAATTTATATCAATTATTAATT
TATCTAGAACTGCATCTTTTCACATCAAATTTATTCATAAAATTCTTGAG
GAAATTtataaaactcttaaaaaactAAACCCGCCTTTCTTAGCTGAGCT
CTTTGTCACAAAAACCTCGGGCTATAAACTTAGACGAGGAGAGCAACTGT
TACCTCCGGCTAACACAGTTAGTTAAGTTTGGTTTACAATCTTGAAGTTT
TGTTGGGTTCGGGTTTTGGAATCGTCTCTCTAAGGATGTGAAAAGCTCTG
CAACGTTTAATACATTTAGGGGCAAATTAAAAATGTTGCCAAACGATTTT
TGAACCTGCCCAATATGTAAATTGTGGtagatatttttaactttttttat
aaaagttggATTTTGTTAGTAACGGTTTAAGGCTGTAACTATTTAGGACG
TTAGGTCCTTTACTTTATGtaccaac Run BLAST on NCBI protein sequence of TCONS_00000625-protein >TCONS_00000625-protein ID=TCONS_00000625-protein|Name=TCONS_00000625-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MSLNSKKSTSGEISTKILQKSANICSFALKDCFTSCLDKTIFLESLKRAT
ITPVLKEGNPTSVKNYRPISILPTVSKVFEKIIAQQLNPFLENCFFRFTV
WLSKRTYSTQHALLRLLHLWQRALDDSNIVGTILMDLSKAYDCLPPDLLI
AKLAAYGVNHNSLLFIYDYLINRYHRVKIGNSLSSFLSISMGVPQGSILG
PILFNIFLNNLLLSDLEAELCNFADDNTLFAIAKALAEIIEIQDILYWGK
INGLVANPGKFEVMFLGRFEPISTFNIGNIKVKVKNQVKLLGI Run BLAST on NCBI transcript from alignment at sc0000002:371501..373526 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000625 ID=TCONS_00000625|Name=TCONS_00000625|organism=Clytia hemisphaerica|type=transcript|length=2026bp|location=Sequence derived from alignment at sc0000002:371501..373526 (Clytia hemisphaerica)
gttggtaCATAAAGTAAAGGACCTAACGTCCTAAATAGTTACAGCCTTAA
ACCGTTACTAACAAAATccaacttttataaaaaaagttaaaaatatctaC
CACAATTTACATATTGGGCAGGTTCAAAAATCGTTTGGCAACATTTTTAA
TTTGCCCCTAAATGTATTAAACGTTGCAGAGCTTTTCACATCCTTAGAGA
GACGATTCCAAAACCCGAACCCAACAAAACTTCAAGATTGTAAACCAAAC
TTAACTAACTGTGTTAGCCGGAGGTAACAGTTGCTCTCCTCGTCTAAGTT
TATAGCCCGAGGTTTTTGTGACAAAGAGCTCAGCTAAGAAAGGCGGGTTT
agttttttaagagttttataAATTTCCTCAAGAATTTTATGAATAAATTT
GATGTGAAAAGATGCAGTTCTAGATAAATTAATAATTGATATAAATTAGA
GTCATAGTTTTCATAAACTACGCTAAGAGCTCTTcgttgaattttttcaa
tttgtttgttGTTGTGTTTTACAAAATTCATCCAAATTAATGGACAAtaa
ttaaaattagaaaaaatatagGCGTGGAACAAGGCCTTCGCTGTTTTAAG
AGAAACGAAGGGACGGATGCGCCGAAGAACGCTGATTTTATTTCCCACCG
ACTGGCATTTTAATTCAACGTGGGAGTTAAAGTTATTATCAATATAAAGA
TTTAACAATATTAGATACCTAAAAGTTTGACCTGatttttaactttaact
ttGATATTTCCTATATTAAAAGTAGATATAGGCTCAAATCTACCAAGAAA
CATAACTTCGAACTTTCCTGGATTGGCAACAAGCCCATTGATTTTACCCC
AGTACAAAATATCTTGAATTTCGATAATTTCAGCAAGGGCTTTAGCGATT
GCGAAAAGGGTGTTGTCATCAGCAAAGTTACAGAGTTCTGCTTCAAGGTC
AGATAGTAAGAGATTAttcaaaaatatgttaaaaagaATTGGGCCTAAAA
TGGATCCCTGAGGGACGCCCATACTAATAGATAAGAAGCTACTCAGacta
tttccaattttgactCTATGGTAACGGTTTATCAAATAATCATATATAAA
GAGTAGACTATTGTGGTTAACACCATATGCTGCTAATTTTGCAATAagta
aatcagggggtaaacaATCGTAAGCTTTTGATAAATCCATAAGTATTGTA
CCCACAATATTTGAATCATCAAGTGCCCTTTGCCAGAGATGTAATAATCG
CAATAGAGCATGTTGTGTACTGTATGTTCTTTTCGAAAGCCACACAGTAA
ATCTGAAAAAacagttttctaaaaaaggatTTAATTGTTGggcaatgatt
ttttcaaatacttTGGATACTGTAGGAAGTATGCTAATAGGTCTGTAGTT
TTTAACACTCGTCGGATTGCCTTCTTTAAGAACCGGGGTAATTGTAGCTC
GTTTTAAGGATTCCAGGAAAATAGTCTTGTCGAGACAAGAGGTGAAGCAA
TCTTTGAGTGCAAAAGAACAGATATTAGCAGACTTCTGTAGGATTTTGGT
GCTTATTTCCCCAGATGTAGATTTTTTACTATTCAATGACATAACTAATT
TGTGGACAGTTTCAGTGTCAGTTTTTGTAAACTCGAAGGAGAGTTACCAG
CTAAAatacttttgatttttataatgcTAGGATGATCTGAGTATTGAGCA
CCGGATCGTCGTAGATCGGCTCGGCATATTGCGACCACTGATATATGTCC
AGTGTCTTAGTTATACCATTGAAATAAGTATCAAAAAGTTCAGCTGTAGT
AGAATCACTATTTACAATTTCATCCTTGTCAACTAAGATAATCTTTTCCG
AAACGGTACGCTTATCAACAGGCTgtaaattttggtaaaattcgAATTAa
ctagcggttttgtgcttttTGAAAAGACAATAAGGAGTGGGAATGttata
aaacagaaaaaaatcaaaaaaatttggaaaatgaaaatgaaaaatgaaga
agaaaaaaatcaactttttgtcgAAT Coding sequence (CDS) from alignment at sc0000002:371501..373526 >TCONS_00000625 ID=TCONS_00000625|Name=TCONS_00000625|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at sc0000002:371501..373526 (Clytia hemisphaerica)
TTAGATACCTAAAAGTTTGACCTGatttttaactttaactttGATATTTC
CTATATTAAAAGTAGATATAGGCTCAAATCTACCAAGAAACATAACTTCG
AACTTTCCTGGATTGGCAACAAGCCCATTGATTTTACCCCAGTACAAAAT
ATCTTGAATTTCGATAATTTCAGCAAGGGCTTTAGCGATTGCGAAAAGGG
TGTTGTCATCAGCAAAGTTACAGAGTTCTGCTTCAAGGTCAGATAGTAAG
AGATTAttcaaaaatatgttaaaaagaATTGGGCCTAAAATGGATCCCTG
AGGGACGCCCATACTAATAGATAAGAAGCTACTCAGactatttccaattt
tgactCTATGGTAACGGTTTATCAAATAATCATATATAAAGAGTAGACTA
TTGTGGTTAACACCATATGCTGCTAATTTTGCAATAagtaaatcaggggg
taaacaATCGTAAGCTTTTGATAAATCCATAAGTATTGTACCCACAATAT
TTGAATCATCAAGTGCCCTTTGCCAGAGATGTAATAATCGCAATAGAGCA
TGTTGTGTACTGTATGTTCTTTTCGAAAGCCACACAGTAAATCTGAAAAA
acagttttctaaaaaaggatTTAATTGTTGggcaatgattttttcaaata
cttTGGATACTGTAGGAAGTATGCTAATAGGTCTGTAGTTTTTAACACTC
GTCGGATTGCCTTCTTTAAGAACCGGGGTAATTGTAGCTCGTTTTAAGGA
TTCCAGGAAAATAGTCTTGTCGAGACAAGAGGTGAAGCAATCTTTGAGTG
CAAAAGAACAGATATTAGCAGACTTCTGTAGGATTTTGGTGCTTATTTCC
CCAGATGTAGATTTTTTACTATTCAATGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000625-exon-sc0000002-1491911889:371501..373526 | TCONS_00000625-exon-sc0000002-1491911889:371501..373526 | Clytia hemisphaerica | exon |
| TCONS_00000625-exon-sc0000002-1510915933:371501..373526 | TCONS_00000625-exon-sc0000002-1510915933:371501..373526 | Clytia hemisphaerica | exon |
| TCONS_00000625-exon-sc0000002-1575043694:371501..373526 | TCONS_00000625-exon-sc0000002-1575043694:371501..373526 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:371501..373526 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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