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TCONS_00000624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000624
Unique NameTCONS_00000624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000624 ID=TCONS_00000624|Name=TCONS_00000624|organism=Clytia hemisphaerica|type=transcript|length=258bp
NGGATTCCCGTTTGATGAGTCGTCTGGCTGTCGGTATATTCCCCATATTT
GGATATCCAATGTAGTCGAACTCAGACAGATGACTTCGATAACGCCATTT
GAATGTGTAACGGTCTGTTTGAAGTGTGATGAAATATCTTCTCTCATGTA
TATAGCGACACCACCACTACATCTTCCTACAGTTTACCGTAAACCACCCG
CATACCTTTTGAGCATGTTGTGGGCTGGTTACAAGGGtgttttagaaatt
ttctttaa
Run BLAST on NCBI

transcript from alignment at sc0000002:258157..258414

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000624 ID=TCONS_00000624|Name=TCONS_00000624|organism=Clytia hemisphaerica|type=transcript|length=258bp|location=Sequence derived from alignment at sc0000002:258157..258414 (Clytia hemisphaerica)
ttaaagaaaatttctaaaacaCCCTTGTAACCAGCCCACAACATGCTCAA AAGGTATGCGGGTGGTTTACGGTAAACTGTAGGAAGATGTAGTGGTGGTG TCGCTATATACATGAGAGAAGATATTTCATCACACTTCAAACAGACCGTT ACACATTCAAATGGCGTTATCGAAGTCATCTGTCTGAGTTCGACTACATT GGATATCCAAATATGGGGAATATACCGACAGCCAGACGACTCATCAAACG GGAATCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000370XLOC_000370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000624-exon-sc0000002-1491911889:258157..258414TCONS_00000624-exon-sc0000002-1491911889:258157..258414Clytia hemisphaericaexon
TCONS_00000624-exon-sc0000002-1510915933:258157..258414TCONS_00000624-exon-sc0000002-1510915933:258157..258414Clytia hemisphaericaexon
TCONS_00000624-exon-sc0000002-1575043694:258157..258414TCONS_00000624-exon-sc0000002-1575043694:258157..258414Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:258157..258414 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22187 2.54583 2.03459 4.46012 22.2613 26.2332 24.9621 26.5367 7.44406 6.04872 14.2346 4.37368 7.06082 2.58975 4.9563 3.99975 5.78594 5.72824 5.52274 5.26992 3.28428 3.3866 0 2.508 25.1161 19.3386 0 1.38279 3.15163 2.59469
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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