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TCONS_00000621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000621
Unique NameTCONS_00000621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000621 ID=TCONS_00000621|Name=TCONS_00000621|organism=Clytia hemisphaerica|type=transcript|length=547bp
agattttcacaaaaatacccgaagttttcctcttcgtcggtcaaatcgct
ataaaatcgcttaaatttcctcattcgccgtaccagatataaaaagcttc
cgtcgtgcctgcaTTCCCACACTTAGTTTTTGCAACAGTTGAGAAAACTC
TTCCCAAGATCCCAAAAAATCCAATTAAACAAGTTCAGAACACTTTCCAA
TCATGAGATATCATTTAAATAGGTTGGCAGGTTGATTTTGTTACtatgca
tttttaaacaaagccTGCTAATAGATTCTGCTGGTCTATAAAATACCAAT
ACATCAGGTGACTggatcaaaatcataaaattttaagTCAcatattatca
ttattatcCATCACTGGTCAAAACTTCAAGTtaatagcacttccaaatca
cAGGATATCATCTGAAAATAAATAGGTTTTTTACTAATCATAGATTCATT
AGCCCTTTAATATAATCTGGTCTGTAAGTAAAATAATACCAAAATATTAA
GTTATTGGATCAAAAcgataaaaatttgatattctttatctatcaaa
Run BLAST on NCBI

transcript from alignment at sc0000002:62710..63256

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000621 ID=TCONS_00000621|Name=TCONS_00000621|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at sc0000002:62710..63256 (Clytia hemisphaerica)
tttgatagataaagaatatcaaatttttatcgTTTTGATCCAATAACTTA ATATTTTGGTATTATTTTACTTACAGACCAGATTATATTAAAGGGCTAAT GAATCTATGATTAGTAAAAAACCTATTTATTTTCAGATGATATCCTgtga tttggaagtgctattaACTTGAAGTTTTGACCAGTGATGgataataatga taatatgTGActtaaaattttatgattttgatccAGTCACCTGATGTATT GGTATTTTATAGACCAGCAGAATCTATTAGCAggctttgtttaaaaatgc ataGTAACAAAATCAACCTGCCAACCTATTTAAATGATATCTCATGATTG GAAAGTGTTCTGAACTTGTTTAATTGGATTTTTTGGGATCTTGGGAAGAG TTTTCTCAACTGTTGCAAAAACTAAGTGTGGGAAtgcaggcacgacggaa gctttttatatctggtacggcgaatgaggaaatttaagcgattttatagc gatttgaccgacgaagaggaaaacttcgggtatttttgtgaaaatct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000367XLOC_000367Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000621-exon-sc0000002-1491911889:62710..63256TCONS_00000621-exon-sc0000002-1491911889:62710..63256Clytia hemisphaericaexon
TCONS_00000621-exon-sc0000002-1510915933:62710..63256TCONS_00000621-exon-sc0000002-1510915933:62710..63256Clytia hemisphaericaexon
TCONS_00000621-exon-sc0000002-1575043694:62710..63256TCONS_00000621-exon-sc0000002-1575043694:62710..63256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:62710..63256 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.536906 0.974324 0.309732 1.6658 11.6805 9.91343 8.09179 12.7088 1.9688 3.34032 1.46217 0.913469 0.781226 0.476016 0.443985 0.205887 0.607013 0 0.419312 1.54559 0.5612 0.237667 1.99732 2.66345 0.140786 0 32.1897 26.2006 11.6834 8.32185
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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