TCONS_00000615 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000615
Unique Name	TCONS_00000615
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1312

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000002:1736720..1740284-

transcript sequence

>TCONS_00000615 ID=TCONS_00000615|Name=TCONS_00000615|organism=Clytia hemisphaerica|type=transcript|length=1312bp
GTCTAGGTCAATCTAGCTTGGAAACTATAAATTTTATCCTTCAACAAAGT
TTGGTGTGGCAACGTTGCTTGGAGATGCTTTTGATGTTTGAGGAAAGGAG
TTAACCTGACTGACTGAACACTGAAGTGAAGCGGCCTGACGCCGTGAAGG
TATATTATTGAATACACAGTTTAGGAATCTATCTCCACCGTAGAAGCTGT
AGGTAAAAATGcacactttagtactgtggaaggtttgAAGAAagtaaaca
ttgtcaatttttttcttttcttttttcaactttaaaaagaatgatttata
attatagatatttgaacatgcaTGATATCAATGTATAtacaatgataatt
ttatggatctctcttgaaaatttgacaaaaatttatctAGAGAAAAAGAA
TTATGATTTAAGGAGTTCTTTTTACCACAcccggggggtacttaggcggt
atgtgccgcccttaagggtaccttgtTTGGACTTtgaaagtcccgctaag
ggttggaaaaatcagaaaatcaaattttagtcccactaagggtccgaaaa
ataggaaaatttcaactttttgccccctgaaagatcgaaatttggtcaaa
attggtcaaatttgtcccgctaagggtcgtaaaattccccaaatgttcct
tttttttctcctttttagtcccggtaagggtccaaagtttgaaagttggg
cggcacccccccgtcagctcgcaacccttgtacccccccccacccccggg
CTACCACCATGCCATTTCTCTTGCTGGGTTTTCTTACGAGAACCGGAGAC
TATAAAAGGAACAAGTTTTGGTTGGAAAAATTTATATCGTTCACTGTACT
GCaccaatttttttattaatgtcAGACGTGCGACAAACTGTGATATTTTT
TGACTTGGCAAAAACCAGTTGAGTATGGCAGAAATCATTGAGATCTCGAG
GGCAGAGATTGCTCACTTTTCAAGGGCATGGGCACAGTTTTGATAATATC
TACAGTTCAGGagcaaaatcattgaaaactgGCTATATTTATAACATGTT
TTACTGGCTTTTTTTGTGGTGGGAAACAAATCTTAGGAGCAGAGTTTTAT
GTTGGAAATTTTCCTTGGGGGCAACcatgacatgctctgaaaactgGGGC
AAAAATATTGCCCTAAGTttatttatgtaaaaattagaaaattttatgag
gtttttgaagaaaatctttaacATAACAAGAAAATGGATTCAATTAGCTT
TCCAAAGATAcatataccgtgaagtcgggtaaccatagtgggcacccccc
ccctttaaaaag

Run BLAST on NCBI

transcript from alignment at sc0000002:1736720..1740284-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000615 ID=TCONS_00000615|Name=TCONS_00000615|organism=Clytia hemisphaerica|type=transcript|length=3565bp|location=Sequence derived from alignment at sc0000002:1736720..1740284- (Clytia hemisphaerica)
GTCTAGGTCAATCTAGCTTGGAAACTATAAATTTTATCCTTCAACAAAGT
TTGGTGTGGCAACGTTGCTTGGAGATGCTTTTGATGTTTGAGGAAAGGTA
AAGTTTCTATTTTTGTATTTTCTTGTGGTTTATTCAGAATTATTTAGTAA
ATTGTTCTCTGTGATGTTTTGCTGTTTTTATACAATCTTATTTTTTTGTT
TTTTTTGCGAGCTGTTTTTCTTAAACTGTCGTTTAGGAGTTAACCTGACT
GACTGAACACTGAAGTGAAGCGGCATAATTGCACTTGAGTCCCCCGGGGG
GACTGATTTTTTCAGATCTAAATTGATGATCTTATTTGTGAAAAAATTGG
AAAGAAATAAAATGAAAACTCACTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAATTACAATCCC
GTGTCGGGACTCAACTACAATTATGCCAGTGAAGCCATAGCTGTCAACTC
TCCCGCATTGAGCGGGAGACTCGTGAAGAAAATTCTGCCAAATCTCCCGC
ATTTTTGGGATTTTCTCCCGCATCTCCCGCATTTCCAAAAATTTTCTGAT
TTTGGAAAAACCAAACGGCAAAATTTCNNGAAGCTGACCTGACGCCGTGA
AGGTATATTATTGAATACACAGTTTAGGAATCTATCTCCACCGTAGAAGC
TGTAGGTAAAAATGCACACTTTAGTACTGTGGAAGGTTTGAAGAAAGTAA
ACATTGTCAATTTTTTTCTTTTCTTTTTTCAACTTTAAAAAGAATGATTT
ATAATTATAGATATTTGAACATGCATGATATCAATGTATATACAATGATA
ATTTTATGGATCTCTCTTGAAAATTTGACAAAAATTTATCTAGAGAAAAA
GAATTATGATTTAAGGAGTTCTTTTTACCACACCCGGGGGGTACTTAGGC
GGTATGTGCCGCCCTTAAGGGTACCTTGTTTGGACTTTGAAAGTCCCGCT
AAGGGTTGGAAAAATCAGAAAATCAAATTTTAGTCCCACTAAGGGTCCGA
AAAATAGGAAAATTTCAACTTTTTGCCCCCTGAAAGATCGAAATTTGGTC
AAAATTGGTCAAATTTGTCCCGCTAAGGGTCGTAAAATTCCCCAAATGTT
CCTTTTTTTTCTCCTTTTTAGTCCCGGTAAGGGTCCAAAGTTTGAAAGTT
GGGCGGCACCCCCCCGTCAGCTCGCAACCCTTGTACCCCCCCCCACCCCC
GGGCTACCACCATGCCATTTCTCTTGCTGGGTTTTCTTACGAGAACCGGA
GACTATAAAAGGAACAAGTTTTGGTTGGAAAAATTTATATCGTTCACTGT
ACTGCACCAATTTTTTTATTAATGTCAGACGTGCGACAAACTGTGATATT
TTTTGACTTGGCAAAAACCAGTTGAGTATGGCAGAAATCATTGAGATCTC
GAGGGCAGAGATTGCTCACTTTTCAAGGGCATGGGCACAGTTTTGATAAT
ATCTACAGTTCAGGAGCAAAATCATTGAAAACTGGCTATATTTATAACAT
GTTTTACTGGCTTTTTTTGTGGTGGGAAACAAATCTTAGGAGCAGAGTTT
TATGTTGGAAATTTTCCTTGGGGGCAACCATGACATGCTCTGAAAACTGG
GGCAAAAATATTGCCCTAAGTTTATTTATGTAAAAATTAGAAAATTTTAT
GAGGTTTTTGAAGAAAATCTTTAACATAACAAGAAAATGGATTCAATTAG
CTTTCCAAAGATACATATACCGTGAAGTCGGGTAACCATAGTGGGCACCC
CCCCCCTTTAAAAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000361	XLOC_000361	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00000615-exon-sc0000002-1575043694:1740188..1740284	TCONS_00000615-exon-sc0000002-1575043694:1740188..1740284	Clytia hemisphaerica	exon
TCONS_00000615-exon-sc0000002-1575043694:1740011..1740048	TCONS_00000615-exon-sc0000002-1575043694:1740011..1740048	Clytia hemisphaerica	exon
TCONS_00000615-exon-sc0000002-1575043694:1736720..1737896	TCONS_00000615-exon-sc0000002-1575043694:1736720..1737896	Clytia hemisphaerica	exon
TCONS_00000615-exon-sc0000002-1510915933:1740188..1740284	TCONS_00000615-exon-sc0000002-1510915933:1740188..1740284	Clytia hemisphaerica	exon
TCONS_00000615-exon-sc0000002-1510915933:1740011..1740048	TCONS_00000615-exon-sc0000002-1510915933:1740011..1740048	Clytia hemisphaerica	exon
TCONS_00000615-exon-sc0000002-1510915933:1736720..1737896	TCONS_00000615-exon-sc0000002-1510915933:1736720..1737896	Clytia hemisphaerica	exon
TCONS_00000615-exon-sc0000002-1491911889:1740188..1740284	TCONS_00000615-exon-sc0000002-1491911889:1740188..1740284	Clytia hemisphaerica	exon
TCONS_00000615-exon-sc0000002-1491911889:1740011..1740048	TCONS_00000615-exon-sc0000002-1491911889:1740011..1740048	Clytia hemisphaerica	exon
TCONS_00000615-exon-sc0000002-1491911889:1736720..1737896	TCONS_00000615-exon-sc0000002-1491911889:1736720..1737896	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000002	supercontig	sc0000002:1736720..1740284 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.861226	0.548661	1.90711	1.32925	1.17943	0.927044	1.1127	0.88434	0.902858	0.600963	0.884324	1.21606	1.33453	0.923192	0.601473	0.656504	0.804143	0.624788	1.82801	1.4835	1.38032	1.33575	0.663694	0.495953	1.20366	1.126	1.21999	1.07227	2.26062	1.80903

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00000615 vs. Swiss-Prot (Human)

BLAST of TCONS_00000615 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00000615 (transcript) - C. hemisphaerica