TCONS_00000611 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000611
Unique Name	TCONS_00000611
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1612

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000002:1545150..1551975-

transcript sequence

>TCONS_00000611 ID=TCONS_00000611|Name=TCONS_00000611|organism=Clytia hemisphaerica|type=transcript|length=1612bp
GaaaacatggatttttaacgttgtAGAGAAAAACTTATCACGGATTTACT
TAtagaaaaaGAAGGTGGCGACCCGTCTTTCTTTTAAGAAGGACGATGAA
ACGGTTTTTGGTTTCGGTGTTGTGTTTGGTACTTCTTATTCAAAATGTTG
AATCACAACGCAAAAACAAAAGCATCAAAAAGGTAATGTTGCTGAGGGTT
ACTCCAACGAACGAACAGCAATTGGACTTTCTGACATCATTGAAGACATA
TAAAGGTGACTTGAAGATTCAACTTTGGAGACATCCAGACGAAGTTGATC
GCCACGTCGATGTCTGGATATCACCAAAATCAAttgacaaatttaaaaaa
ctttctgGAGCTTTGAACATGACATATgaagttttgacaaaaaatatttt
cgatgaATGGGACAAAGAATATTCTATGAATAATATCGAAGATTTTGATA
TGGTCTATCAAAAATATGACGAGATAGTTGGAGAATTGAAACGACTTGCA
TCTGTTTATTCAGACATTATGGAGTTACAAAGTATCGGAAAATCTTACGA
GAAAAATGATATATACTCAGTTCATATTAGTTTAAATCGAAGTGACAGTC
GTGAAATCATTTATTTGAACTGTGGATCACACGCAAGAGAATTCTTATCC
GTCTCTTCATGCAAATATGTCATTCGAAAGATTCTGTTCGATTCTAAATA
TGAtgataaaatcaaagatttGTTGCATAATTTCGACATTGTGATGACAC
CGCTATTGAATCCAGATGGTTATATTTTTGCACACAATAAAAAACTCAAG
CTGAACAGACTATGGCGTAAATCACGTTCACCGACTTCTGATCGAACTTG
TTATGGAGTTGATTTGAACCGGAATTTCGATCATCGATGGGGAGGATACG
GTGGTTCTGGTGATCCATGTGATAACATATACAGCGGGCCACGTCCTTTT
TCCGAACAAGAAACGCTGTCTTTAGCACGCTACCTATACAAATTACGACG
TCGTCTGGTATCTTACATGGACGTCCACGTTTNGCACGCTACCTGTACAA
ATTACGACGTCGTCTGGTATCTTACATGGATGTCCACGTTTTTGGTCAAC
TCTGGATGAGTCCATGGGGATATTCAAGTACAACACCAAAGCATGCTGCT
ATACATGAGGCCATGCTGAAACAAATTAAAGCAAATTTATTCAAAGAGCA
GAACATCGTTTACGAAGTTGGACAGTCTGCAGTAGTATTATatCAAACAA
GCGGCGACTCTATCGATTGGGTATACGGCCGTCTTGGTGTCGTTCACTCT
TATGGCGTCGAATTACGCCCTAACCTGACTGTAAGGCGTGGTTTCCGATA
TCATTCCAACTTTACAAAACCTACTGGAGAAGATCTTCTCGTAGGTATTA
TGACGATCTCAAATGAATTGTCAAGAGAGAGAAATGAGAGAATGGGTGCT
ATGCTATGATGAATAGTTGGTatctttttctgaaagattttctaaaagat
tattttattttttgaatatttaacaaatgaaataaaaattttataccATA
ACTTGGACCTATCTTTATTCATGGCGTTTCGAAATTATTAGAGTATCGAT
ATTTCATTGGGG

Run BLAST on NCBI

transcript from alignment at sc0000002:1545150..1551975-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000611 ID=TCONS_00000611|Name=TCONS_00000611|organism=Clytia hemisphaerica|type=transcript|length=6826bp|location=Sequence derived from alignment at sc0000002:1545150..1551975- (Clytia hemisphaerica)
GAAAACATGGATTTTTAACGTTGTAGAGAAAAACTTATCACGGATTTACT
TATAGAAAAAGTTAATTTTTTGACAAATTTTATTGGAATGGAAAGTTGAT
TTTTGCTAAATTTATTATAGTGAAATTTTTTTTTCATAACAATTCAGCAA
GCAAAAACCGCTATTTGATTATAATTTCTTCAATCAAAAATTACAGCATC
TTTCTTGTTCACTGCAGATTATTTTGAGACAGACTTTATATCCCTTCTCT
AGACCTTCTCTTAACTTTTATATAAGTAAATTTTTGCAAAACACGTGACC
TTGTCAACAGATCTATAATTATTTATTTCAAGGAAGGTGGCGACCCGTCT
TTCTTTTAAGAAGGACGATGAAACGGTTTTTGGTTTCGGTGTTGTGTTTG
GTACTTCTTATTCAAAATGTTGAATCACAACGCAAAAACAAAAGCATCAA
AAAGTAAGTTAATTTCTCTCATATTCTCAAAATAGGCTGTTAAAACATAC
AGGGGGATGGACGAACCTCTTCAAGACAAAAAAATTATTGAAAATGTGTG
GATACCCCCCCTGGAAAATGGCAAAACTTGCAAAAATACCCTAGGAAAGA
TTCTTTTCATACCTTAAAGTGAAGGTAGACGAACTGAAATCAGTCTTTTA
TCCCCTTGGAAAAATGAAAAAAAACCCTGGAAATTCTGCTCGGATCACCC
ACTGGAAATCTTCGTCCACCCCCCCCCCCTGTATGGATAAAAAATGGAGT
GGCCCAATACTACGGGTTATAAGACAGGGTGAAGAGTCTACGTAGTAAAA
TTTTAAGTATGCTTTTCTCGAATTCGATCTTCAAGGAGTGTCTAAGACTT
TTCCTCAGAAATTCGTTCTACCCAAATTTGATAAATTTGGAATCCAAATT
TGGAATCATATTGCCTTAAAATAGTTTTCCGTCATTCAGCAAGTTAACAA
AGTTTCTATGACTTCGATCTTACCACAACTAAGGGGTTGTTAGGACGAGA
GAAAAAAACTTCGATGGGCTTTAAACGCACTGTAAGTGTAAGTGGTACCG
GAAATGTTTGAATATCAAAAGTTATTGTTTAGTTTGTTTTGTTTATGGTT
TGAATGACAGTTATGTAAACAAACAGTCAACACAAAAAATTCTTAACTTT
GGTCGTCAACCCCATTCTAAAATAGAGTTCTGAAAATAACCTTTTTTATA
AGCATCTCTGCCCGCATTCTTGACTGTATTTCTCTTCTAATAATAAATAC
TTGCTTTGCCCTATCTACACTTTGTCAAACTCTCGATGTTTTATAAACAC
ACCTCTGCCTCGCTAATACAAAGAGGACATTGCAACACACATAATGAAAA
GTATATTGCAACAAAAGGGGCAACTAAGCTCTGTCTCTGTTCTCAATAAA
ACCAATCCAAAATTGCAATCTAATATCGCACAACCGTCTTTAAAAGCCAA
ATTCTTTAAAAGTAAATCAATCTATTCATGACATCCCATTCTCACAGACT
CGGTAGGACTTTTTCAGCCAGTGGGGATAGAAATAGCAGACTAAAACTCG
ATGGGGATTGATATTCCCATATTTTTTATGGCTGGGGATTTAAATTGCAT
TGCTTTCAAGTCAGAAAAATAGTGGGGATGGGGAAAACAGCATGATATTA
TGTAGTGAGGATTGGTTTGTTTGATTATTTTCAGTGGGGACAAAAATTGG
AGTACAATTTTCACTGGGGACGTTATTTTGGCCATTTTTTCCAGTGGGAA
GGATTCCCAGTGGATCTGTGAGAAGGGGGTGTTTTATGTCAGTGTGGAGG
AGGGGACTTTTAAATCTCATGAAACTGATAAAACGACTTGTTGTTGGGAA
AAAAGTTTGGATGTTTTGCATCTATGAAGGCTTACTATACCTTTCTTAGG
GTAATGTTGCTGAGGGTTACTCCAACGAACGAACAGCAATTGGACTTTCT
GACATCATTGAAGACATATAAAGGTGACTTGAAGGTACGAGGTTAGATCT
CCACATTCACTGATTGAAGCCTTCCCCCAGCGGACCCAAAATTCACGCCA
TTACGTCAATTCTTTTCAAATTTCACGATGTCACGCCTGTGAAATTCGAT
ATTCACGATAAAGCCATTTTTTCTCGAAAATCACGCCACGGAAAACCCTG
GGAGTTGCTAAATTCAAGCCACTCAAGCTCACGACTTGATTTTCATCAAA
GCCAATCAAAAAATTAAAAGCGATGAGTCGTTTTTAAATAGGAAGCCCTT
CGATACTTTCTGTAGGTCAATACAAAGACAAGTATTTCCACAAAATTGGG
GTGTCACTATTCTTTAGACTTATCCACGGCATCAATCATAGAAAACAAAA
AGCCTTAGCCCGGGGGGGGGGTACTTAGGCAAAATTGGTGCCGGGTATGT
GCGAGCCATAAGGGTACCTTTTCTCATTCCTCAAAAGTCTGAAAGGGTCC
CAAAATCACGAAAATCAAAAATTTCTCTCTCAAAGGGTCACGATTTCCAA
AAATTTTGACCAAAATTTGCGTGAAAATCAAACCAAAATTTAGGAAAAAG
TCTCTCAAAGGGTCCCAAAATCACCAAAATTTTGTCTCTCCAAGGGTCGA
TTTTCGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCGGGAGCCTTAGCCTCACCA
TATGAATTAATTCGATAAATTAGTCATGAGAAAAGGCATTTCTAGCGTGA
CTGTATTGTTGTTAACCACACTCTGAAGTTCTTAACTTCTGTCAACACAG
ATTCAACTTTGGAGACATCCAGACGAAGTTGATCGCCACGTCGATGTCTG
GATATCACCAAAATCAATTGACAAATTTAAAAAACTTTCTGGAGCTTTGA
ACATGACATATGAAGTTTTGACAAAAAATATTTTCGATGAATGGGACAAA
GAATATTCTATGAATAATATCGAAGATTTTGATATGGTCTATCAAAAATA
TGACGAGGTATGTAATTATCACACCCGAAATATGTTTGCAATCTAATTAT
AATTAGATGTAAAGCATGCAATCTTTAACTTCTTCACTACTGTTGGAAAG
ATTTTTCAATGCAATTTTCTCGGCTCGGCTTAAGCAAAATAGGTTATGTT
TTGGTCTGTTGGAAAGCTCTTTTCAGGATCTATATTTTCAGTATGCCACA
TTTTGAAGCAGGTCCTCAATCAAAATCACCGGAAGCCAAAAGAATCGTTT
ATAAATGAAGGAATTTCAGTTTGGCAGTACTCATGAAGTAGAGAGCTGCC
AGTGTATTATTACTATATTCAGAAACTCCACTGTGCCAGGAATACCTCCT
TTTACTCTTTTATTAAAGTAATAATACCCAATTCCCCTCACATTACATGA
GTTGACTTGGGCGAAGGTATATTTACTTGCTAAGTGGATGTTAGCACTGA
ATAGGTATCGAAGCCCGACCTGCTGGACAGAAGTTAAAGCGGATAATCTC
AACACCACACGTATCCATGAGAACTAGTGTATACATTATCAAGGTTTTCA
GAAAAAAACAACTCAGATTTTGTCTCTTTGATTTCTGCTAACAGGGTCAT
TCGTCTTAAACTCTTGTTTAGATAGTTGGAGAATTGAAACGACTTGCATC
TGTTTATTCAGACATTATGGAGTTACAAAGTATCGGAAAATCTTACGAGA
AAAATGATATATACTCAGTTCATGTAAGTTTATTTATTTTTGTTTATCTA
ACGTCTATCATTCTTTAACTATTCATGCATCCACAGCTGACATAAAACAG
GCCCGAGGCTACATACGAAAAACAGGTGACGGGTATGTGCAAGCCATAAG
GGTACCCTTATTCATAACACCTTTATGTCATAGACCCAGACCCCCTTTCT
ACAATCAGATTCCTATGCTTTATCCTCACAGAGAAAGCTTTTGGGTTATT
ATCAAGTATAGGTTCATTTAAAATGTTGAAGTTTTTCTGTTTCTCAGATT
AGTTTAAATCGAAGTGACAGTCGTGAAATCATTTATTTGAACTGTGGATC
ACACGCAAGAGAATTCTTATCCGTCTCTTCATGCAAATATGTCATTCGAA
AGGTAAGACACTTTCATGAGCTAAATACATCATTTATCCAACTAACCTAC
TAGCTTTCAAAGAAGTTATCATTCAAAACCGCGCTGTCGATCGCAGAATT
TTCTCCTTGATTGAATCTGAAAATAACCGCAATGTGAAACATGGTTCTCT
CTCGTCTGTCTTTTTTAGATTCTGTTCGATTCTAAATATGATGATAAAAT
CAAAGATTTGTTGCATAATTTCGACATTGTGATGACACCGCTATTGAATC
CAGATGGTTATATTTTTGCACACAATAAAAAACTCAAGGTAGGTGCATAA
GTTAATAAAAACGCCGTTAACGATGAGGGAACTTTTCTAATCTTTTCAAC
TTTGAGAAACTTTTATTCTCATGAAAGATTTCACTTCAATAGTCCCTTCG
TAAAAATATTAGTTATTTTTCCTTTTCTCGAGGTCAGATTTCTTATCTCC
ACATGCAGTAGAGTCTCCATAACTCGACCACGCACGGGGAAAACAAATTT
GTTCGAGAAATTTCGAGTTATGGAGTAAGGTTTATAAGACATTGTTAACT
CAAAGATCGAGAAAACTTGTTCGAGTTAAAAAGACATTCAAGTTATAGAG
GTTCGAATTAAAGATACATTGTGGTTCGGGGCTCTTATATTAATAACCAA
CCATACGCGATAAAGGATAATTTCTTTACAGCTGAACAGACTATGGCGTA
AATCACGTTCACCGACTTCTGATCGAACTTGTTATGGAGTTGATTTGAAC
CGGAATTTCGATCATCGATGGGGAGGTGAGATAAATCAATGCTTTTGTAA
ATCGAACGTTGAAGGGTGTTGTGATGTTGAGAGTATTGCATATTTTTACA
TGTTATTTTATGCTAAATACCCAAACCTGATTATAAGCATAAAGTTGGCG
AATATTTTAGTCAAATTTTTACGAAATTGGTGTACCAGTCGATATTACAC
CCCCTTCTCACAGACCCAGTAGGATTTTCTCAGCCAGTGGGGATAAAAAT
GACGGACTGTAACTGGATGGGGATTTATATTCCCATATTTTTTATGACTG
GGGATTCAAATTCTTTTGTTTTCAAGTCAGAAAAATTCAGTGGAGATAAG
AAACATAGCATCATAATATTTTGCAATGAGGGTTGGTTTATTTTATTATT
TTCCGTGGGGGAAAAATTGAAGTATAGTTTTCCACCGGGACGATATTTTG
GCCAAATTTTTCTAGTGGGAAAGGGTCCCAGTGGGTCTGTGAGAAGGGGG
TGTGATATTTAAAATAATCAACCTTGAATGTTGATCTAATTTTCACTCTA
AGAAATTCACATTTAGTTTCATAAACCTTTCAAAAATAATTTCTACTTTC
TAAGTGTTTCTACTGCAGGATACGGTGGTTCTGGTGATCCATGTGATAAC
ATATACAGCGGGCCACGTCCTTTTTCCGAACAAGAAACGCTGTCTTTAGC
ACGCTACCTATACAAATTACGACGTCGTCTGGTATCTTACATGGACGTCC
ACGTTTNGCACGCTACCTGTACAAATTACGACGTCGTCTGGTATCTTACA
TGGATGTCCACGTTTTTGGTCAACTCTGGATGAGTCCATGGGGATATTCA
AGTACAACACCAAAGCATGCTGCTATACATGAGGCCATGCTGAAACAAAT
TAAAGCAAATTTATTCAAAGAGCAGAACATCGTTTACGAAGTTGGACAGT
CTGCAGTAGTATTATGTAAGCATTTTTAAACTTTGTATAAACCTAAAGAG
GTACATGGTGTGGTTTTATCAGCCCTTTTCTGGCGGCGTATGAAAAATTG
TGACGGTATTTTGGTGGCTAACTTGCAATGCAAAGATTTCAGCAATTATT
TCTGTCGGTGTTGACGGATATTCAAAATATATGTAGTGACACCACCCCTC
CTGAACGCCCCACACTAGCTGTAGACAAATAAAAATACCCTGTGTCGGCT
TTCGAGATTCTCGTTTAAGTCTGGTTTAAGTCAAAAATTAATTTAAAAAG
TTTACATTAACGTGATGTAGAAGACTGTTCATCTAACGTTTCCAGATCAT
CTAAAAAGAACGACAAATAACATTCAAAAAGCGACTAAAAGAACCCTAAC
CCTAACCCTAACCCTAACTATCAAAAACGACATAATTTGGATATTAAAGA
CGTAAAAAATTTGGATTTGAATTTTGGTTCGGGAAATAAATCGGGTTAAA
GTTTTGGTCGGGAATAAAAAAACCGGATACAAGTTTTGGTCGAGTGATAA
AATGTCGAGGGAAAATTAGGTAGCCTCTTTTTATACTTATGACAGAAATC
TGTGTGAGACAGAAAACTATTCAAGTAAATATAATTCCTAGCATTTTTAT
TTTAGATCAAACAAGCGGCGACTCTATCGATTGGGTATACGGCCGTCTTG
GTGTCGTTCACTCTTATGGCGTCGAATTACGCCCTAACCTGACTGTAAGG
CGTGGTTTCCGATATCATTCCAACTTTACAAAACCTACTGGAGAAGATCT
TCTCGTAGGTATTATGACGATCTCAAATGAATTGTCAAGAGAGAGAAATG
AGAGAATGGGTGCTATGCTATGATGAATAGTTGGTATCTTTTTCTGAAAG
ATTTTCTAAAAGATTATTTTATTTTTTGAATATTTAACAAATGAAATAAA
AATTTTATACCATAACTTGGACCTATCTTTATTCATGGCGTTTCGAAATT
ATTAGAGTATCGATATTTCATTGGGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000358	XLOC_000358	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000002	supercontig	sc0000002:1545150..1551975 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.66054e-07	4.37242e-08	0	8.73203e-08	8.03791	8.16549	30.5928	28.9472	21.9583	15.3553	24.8559	26.1682	30.3711	48.28	2.98863	1.56157	2.55187	1.63982	14.0461	15.5731	5.74118	13.5458	1.48298	9.53927	20.6688	21.8413	1.98377	5.7097	79.8643	61.5684

Blast

[Close]

BLAST of TCONS_00000611 vs. Swiss-Prot (Human)
Match: CBPA4 (Carboxypeptidase A4 OS=Homo sapiens GN=CPA4 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.552e-39
Identity = 78/267 (29.21%), Postives = 130/267 (48.69%), Query Frame = 3

Query:  189 LLRVTPTNEQQLDFLTSLKTYKGDLKIQLWRHPDEVDRHVDVWISPKSIDKFKKLSGALNMTYEVLTKNI---FDEWDKEYSMNNIED-----FDM-VYQKYDEIVGELKRLASVYSDIMELQSIGKSYEKNDIYSVHISLNRSDSREIIYLNCGSHAREFLSVSSCKYVIRKILFDSKYDDKIKDLLHNFDIVMTPLLNPDGYIFAHXXXXXXXXXXXXXXXPTSDRTCYGVDLNRNFDHRWGGYGGSGDPCDNIYSGPRPFSEQE 962
            +LR+   N  ++  L+ L     +LK+  W+ P   +R VDV +   S+  FK    +  + Y V  +++    D  D E   N  ++     F+   Y   + I  E+  +A+ + D+     IG S+E   +Y +  S  +   R  ++LN G H+RE++S ++  +  RKI+ D + D  I  +L   DI + P+ NPDGY++             +SR+P S  +C G D NRN++  + G G S +PC  +Y GP   SE E
Sbjct:   26 VLRINVRNGDEISKLSQLVN-SNNLKLNFWKSPSSFNRPVDVLVPSVSLQAFKSFLRSQGLEYAVTIEDLQALLDNEDDEMQHNEGQERSSNNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQ--TQNRLWRKTRSRNPGS--SCIGADPNRNWNASFAGKGASDNPCSEVYHGPHANSEVE 287

HSP 2 Score: 58.151 bits (139), Expect = 1.552e-39
Identity = 36/111 (32.43%), Postives = 53/111 (47.75%), Query Frame = 2

Query: 1076 MDVHVFGQLWMSPWGYSSTTPKHAAIHEAMLKQIKANLFKEQNIVYEVGQSAVVLYQTSGDSIDWVYGRLGVVHSYGVELRPNLTVRRGFRYHSNFTKPTGEDLLVGIMTI 1408
            +D+H + QL M P+GYS      A   + + +     L       Y+VG +   +Y  SG SIDW Y   G+  ++  ELR   T   GF   +N   PT E+  +G+ TI
Sbjct:  305 IDLHSYSQLLMYPYGYSVKKAPDAEELDKVARLAAKALASVSGTEYQVGPTCTTVYPASGSSIDWAYDN-GIKFAFTFELRDTGTY--GFLLPANQIIPTAEETWLGLKTI 412

The following BLAST results are available for this feature:

BLAST of TCONS_00000611 vs. Swiss-Prot (Human)

BLAST of TCONS_00000611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CBPA4	1.552e-39	29.21	Carboxypeptidase A4 OS=Homo sapiens GN=CPA4 PE=1 S...	[more]

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TCONS_00000611 (transcript) - C. hemisphaerica