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TCONS_00000600 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000600
Unique NameTCONS_00000600
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000600 ID=TCONS_00000600|Name=TCONS_00000600|organism=Clytia hemisphaerica|type=transcript|length=2245bp
TTGAAGAGtcaaaagcgagtttatgtatcagaAATAAATCGAAGGAGACA
GTATAAGACAAAGTTGATATGTCGCTaaaatcgccgtccactttgctcga
cgacggtaaaaacacaaaaatacagtcatctgtttagGTACAAGAATAAC
AATGAAAAAGACCTGGGAACATACTGTCTTAGAATGGCCACCGATGAAAA
ATATGGAGCTATCGAATTTCAGTATTATGACTCTCTGCGTGTGTGGAATT
GTCTCTTTGaatgtgtattttaccgaaTGCTTCATCAGGCGAAAATCAAG
GAATAAAGACCACAAGATGATTGATTTTCCTGATTTCTTTCATTCTCTTT
TTCGACCAACCGATGAGGAGAAAGGAGAAGCTAAAATGATAAACAAAGGA
GCCAAGGATGTGAATAGTCAGTTAGATTACGCTAAATTTATATTCTTCAA
TTCACTgtattttgttttcatgttcATGTTGATAACAGTGTTGCATCAAT
ATGCTGTTATTCTGCTCATTGTTCAACATTGTGCTGTTATTGGTGTCATA
TTATTAAACTTTCTACAGTTCGGCAAACCATCTAGAGCCGTTCCCCTGAC
AGTTCTGTACGGTTTTCTATGGCTTTCATCGGTGAACACTGACTATCGCT
GGATGCTAAATAATACGATTGTCATCATGTGTATTTTATTGACCGGTTAC
ATTcgttttaaaaactttatctATCTCCAGATATTTATGTGGCTGGCTTT
TGTCTATGATGTTTATATGTTGAGCAGTATACATTTGGGAGATAGTTTCC
AGTTTTTTAGCGTACGCGAGACCACATTGGAACCACTATCGGTGCAACAT
ACCGACAATGAGGAACTATGCANTGTACGTGAGACCACATTGGAACCACT
ATCGGTGCAACATACCGACAATGAGGAACTATGCAAGACGCTATTATGCC
ACGTTTTCAACCACGACAGCACCTTTAAAATCCCGACCGCTTTTTCTATA
CAATTCGGTTCAAAGGTAGATCATGTTTTTATCGGTACAGGTGATATAAT
GATTGGTGCTTTTGTGGCTAATTTTGCGTCCCGATTTTTCAAGAAACCAA
ATTATGTTGCTTTTACAGTATTTGCATTTGGTAGTGCGGTTAGTTTATTA
TCGCATGTCGCAACCAATGCACCCTTTCCCGCTCTTTTGACAATTGTGCC
AATTTGTACGCTGGCTTTAATGGTTCTTGCTATATGGAGTAACAAATCTA
TGGAANTTCCCGCTCTTTTGACAATCGTACCAATTTGTACGCTGGCTTTA
ATGGTTCTTGCTATATGGAGTAATAAATCTATGGAATTGCTTCTGGATTG
TGAGAAATCTGATTGTAGAACAATACGCAGACAAAGCGAGGAACTCATCT
TGAAAGTTTGAGGTTTGGAGTCTATAAAGGAACAATATCCTGCACCAAAC
TCTTCTTCACTGAAAAGATAACGTGTATAGTGTTGTACATGCTAAAGGAA
CAGTTTTGTATTGCTTTTCTTATGCTAcccttttattaaaaagaacgaaa
aatataatataaacatTAGATGGATTTTTATGAATAGATTTTAATATTAG
AAAACTGCGATTGTGATActgtacacccctgtgtcacagacccgctggga
ccccagccccactggaagatTTGGCAAACATTTCATCCCCAGTAGGAAAA
TACCCGGtgatttcagccccactgggaaattgactttgatttcatcccca
tccgaaaataaatgtttaaaaactgcTCTCCAAagccatccccactggat
tttttaaccttgaaacaataTATAATTTATATACCCATTTGAATTTCGAT
AGTAATTTTTATCCCCagtgagaaaaaaagttccatcggggttgtgatac
aggggtgttacTTTCACTATAcctcaaaaatatttcatcagTAAACAATG
AAAACTTCTTTCAGATTGCGGCTCAACATGGAAAAGCTTTTTTGCTAATC
TGATTTTCAAGCGTCAAAAAAGAAAGCAACAATTTTTCGCGCCTCTAGAA
AATTACAATTTAGTCCTTAATTAAAAGGATACATTTTTTTGTGTATAAAA
TCATCATATCTAGGATTATTATTTAAtatagagatttttttttaactttt
aaactattttttaatttttaaacgaaaaaatatatatcatttTACTTTGA
GAAATAACAGATCTGAAATCGAACTAAACTCTTACAAACTTTTTT
Run BLAST on NCBI

transcript from alignment at sc0000002:1434045..1439383-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000600 ID=TCONS_00000600|Name=TCONS_00000600|organism=Clytia hemisphaerica|type=transcript|length=5339bp|location=Sequence derived from alignment at sc0000002:1434045..1439383- (Clytia hemisphaerica)
TTGAAGAGTCAAAAGCGAGTTTATGTATCAGAAATAAATCGAAGGAGACA GTATAAGACAAAGTTGATATGTCGCTAAAATCGCCGTCCACTTTGCTCGA CGACGGTAAAAACACAAAAATACAGTCATCTGTTTAGGTGAGCAAAGGTG ATATAAATTCGTACATCGACTATATCCTTTCTGACTGACGTAAATCGACT ATTGACTATATTTTGCCTCGACTTCATTTAACGTGGCCCTTGATATCCTC CGATTCGCTAGAAATATGAAAGGGAGAGAGAAATTTTTGTTGTGGCTCGG CTGTTATTATATGTTGGCACTTTGAGCCGCTTTGAGCCTCAAGTTGTACT CATCCTGTTTTTATTTTTACAACAGGCCTGGATAACATTTTTAATACACG ATCCCTAAAATCCTTGAAATTCAGCAATTCTAGGCTCAGCATTGTTCTTA AATTGTTCTTGTTTTTTTTTTTGAATTTTTTAGCCTGGTCGTTATCTTAT AAAATTGTTCTCATTAAAAAAGAGTGTATGAAAGAGCTTGTGAATTACTA GCAGATATACCATCTTAAATCACAGCCTCAAGTTTTAAAGCAGGCTTAGT CCATATGTAGATTGCGTATGAGATACTGGCTAGTTTTTCATCCAGAAGGT TTCTCTTTGCGGTATAATTATTTTCTTCTTCTTTTCTCTTTCCCTTTGTA ACTTTGTGAATTCGGCTTTTTAGATTCAGCATGATAGTTTGTTTTGAGTT GAGAAAAAATATTTCACAATAAATGTCTTGCTCTTCAATTTAAAAAAATT TCATCTTATCATTATTAAACCTGAGATGAGTTATCATTTACGGTTGATAT TTTCAAAAGGAAGGAGTGTGGTAAAACATGTTCACTGTAAATAATATGGT AAAACATTTAACGCAAGGATTGTGGTAATTTTTTTCATTCGAGCAATGTG GCAAAACATTTACAAAACAAGGGCGTGTATTNTTTTTTTTCATTCGAGCA ATGTTGCAAAACATTTACAAAACAAGGGCGTGTATTGTAATAATATTTTT AATGTAAATACCTTATTACAAGAATATTAACACGAAATTTTTCCATTCGT GTTAATAAAATGATTAGTAATATTCGTGTAATAAGGTAGTGTGGTGAAAC ATTTTCAAAGTAAAGAGTGTGGTAAAACATTTTCAATGTGAAGAGTGTGG CAAAGCATTTTCAATGTGAAGAGTGTGGTGAAACATTTTCAATGTAAAGA GTGTGGCAAAGCATTTTCAATGTGAAGAGTGTGGCAAAGCATTTTCAATG TAAAGAGTGTGGAAAAACATTTTCAAAGTAAAGAGTGTGGCAAAGCATTT TCAATTTGAAGAGTGTGGCTAAGCATTGTCAATGTGAAGAGTGTGGAATA GCATTTTCAAAGTAAAGAGTGTGGTAAAACATTTTCAATGTGAAGAGTGT GGAAAAGCATTTTCAATGTAAAGAGTGTGGCAAAATATTTTCAATGTAAA GAGTGTGGCAAAGCATTTTCAATGTGAAGAGTGTGGAAAAACATTTTCAA TGTGAAGAATGTGGCAAAACATTTTCAATGTAAAGAGTGTGGCAAAGCAT TTTCAATGTGAAGAGTGTGGAAAAACATTTTCAATGTGAAGAGTGAGGCA AAACATTTTCAATGTAAAGAGTGTGGCAAAGCATTTTCAACGTGAAGAGT GTGGAAAAACATTTTCAATGTGAAGAGTGTGGCAAAACATTTTCAATGTA AAGAGTGTGGCAAAGCATTTTCAATGTGAAGAGTGTGGAAAAGCATTTTC AATGTAAAGAGTGTGGCAAAACATTTTCAATGTGAAGAGTGTGGTAAAAC ATTTTCAAATGTGAGGAGTGTGGTAAAACATTTTCAATGTGAAGAGTGTG GTAAAAAAATTCAATGTAAGGAGTGTGGCAAAACATTTTCAATGTAAAGA GTGTGGCAAAACATTTTCAATGTGAGGAGTGTGGTAAAACATTTTCAAAT GTGAGGAGTGTGGTAAAACATTTTCAATGTGAAGAGTGTGGCAAAACATT TTCAATGTAAAAAGTGTGGTAAAACATTTTCAAATGTGAGGAGTGTGGTA AAACATTTTCAAATGTGAGGAGTGTGGTAAAACATTTTCAATGTGAAGAG TGTGGCAAAACATTTTCAATGTAAAAAGTGTGGTAAAACATTTTCAAATG TGAGGAGTGTGGTAAAACATTTTCAAATGTGAGGAGTGTGGTAAAACATT TTCAATGTGAAGAGTGTGGCAAAACATTTTCAATGTAAAGAGTGTGGAAA AGCATTTTCAATGTGAAGAGTGTGGAAAAACATTTCCAATGCGAAGAGTG TGGTAAAATATTTTCAATGTGAGGAGTGTGGTAAAACATTTTCAAATGTG AGGAGTGTGGTAAAACATTTTCAATGTGAAGAGTGTGGCAAAACATTTTC AATGTAAAGAGTGTGGAAAAGCATTTTCAATGTAAAGAGTGTGGAAAAAC ATTTCCAATGCGAAGAGTGTGGTAAAATATTTTCAATGTGAGGAGTGTGG TAAAACATTTTCAAATGTGAGGAGTGTGGTAAAACATTTTCAATGTGAAG AGTGTGGCAAAACATTTTCAATGTAAAGAGTGTGGTAAAACATTTTCAAA TGTGAGGAGTGTGGTAAAACATTTTCAAATGTGAGGAGTGTGGTAAAACA TTTTCAATGTGAAGAGTGTGGCAAAAAATTTTCAATGTAAAGAGTGTGGA AAAGCATTTTCAATGTGAAGAGTGTGGAAAAACATTTCCAATGTGAGGAG TGTGGTAAAACATTTTCAATGTGAGGAGTGTGGTAAAACATTTTCAAAGT AAAGAGTGTGGCAAAACAAACATTTTCAATGTGAAGAGTGTGGAAAAACA TTTCCAATGTGAGGAGTGTGGTAAAACATTTTCAATATGAGGAGTGTGGT AAAACATTTTCAATGTAAAGAGTGTGGCAAAACATTTTCAATGTGAAGAG TGTGGCAAAACATTGTCAATGTGAAGAGTGTGGCAAAACATTTTCAATGT GAAGAGTGTGGCAAAACATTTTCAATGGTAGGAGCGTGGTAACATTTCCA AATGTGAAGGGTTTGGTAAAATGTGTAGTTAACAAACATATTCAATACAA AGGCAGTGACCAATAAAATAGTAGAACTCACCTCTCGTCTCTTCTGAATC TTGCTATTCATGTTTTTATCGTTTCCTTTAGGTACAAGAATAACAATGAA AAAGACCTGGGAACATACTGTCTTAGAATGGCCACCGATGAAAAATATGG AGCTATCGAATTTCAGTATTATGACTCTCTGCGTGTGTGGAATTGTCTCT TTGAATGTGTATTTTACCGAATGCTTCATCAGGCGAAAATCAAGGAATAA AGACCACAAGATGATTGATTTTCCTGATTTCTTTCATTCTCTTTTTCGAC CAACCGATGAGGAGAAAGGAGAAGCTAAAATGATAAACAAAGGAGCCAAG GATGTGAATAGTCAGTTAGATTACGCTAAATTTATATTCTTCAATTCACT GTATTTTGTTTTCATGTTCATGTTGATAACAGTGTTGCATCAATATGCTG TTATTCTGCTCATTGTTCAACATTGTGCTGTTATTGGTGTCATATTATTA AACTTTCTACAGTTCGGCAAACCATCTAGAGCCGTTCCCCTGACAGTTCT GTACGGTTTTCTATGGCTTTCATCGGTGAACACTGACTATCGCTGGATGC TAAATAATACGATTGTCATCATGTGTATTTTATTGACCGGTTACATTCGT TTTAAAAACTTTATCTATCTCCAGATATTTATGTGGCTGGCTTTTGTCTA TGATGTTTATATGTTGAGCAGTATACATTTGGGAGATAGTTTCCAGTTTT TTAGCGTACGCGAGACCACATTGGAACCACTATCGGTGCAACATACCGAC AATGAGGAACTATGCANTGTACGTGAGACCACATTGGAACCACTATCGGT GCAACATACCGACAATGAGGAACTATGCAAGACGCTATTATGCCACGTTT TCAACCACGACAGCACCTTTAAAATCCCGACCGCTTTTTCTATACAATTC GGTTCAAAGGTAGATCATGTTTTTATCGGTACAGGTGATATAATGATTGG TGCTTTTGTGGCTAATTTTGCGTCCCGATTTTTCAAGAAACCAAATTATG TTGCTTTTACAGTATTTGCATTTGGTAGTGCGGTTAGTTTATTATCGCAT GTCGCAACCAATGCACCCTTTCCCGCTCTTTTGACAATTGTGCCAATTTG TACGCTGGCTTTAATGGTTCTTGCTATATGGAGTAACAAATCTATGGAAN TTCCCGCTCTTTTGACAATCGTACCAATTTGTACGCTGGCTTTAATGGTT CTTGCTATATGGAGTAATAAATCTATGGAATTGCTTCTGGATTGTGAGAA ATCTGATTGTAGAACAATACGCAGACAAAGCGAGGAACTCATCTTGAAAG TTTGAGGTTTGGAGTCTATAAAGGAACAATATCCTGCACCAAACTCTTCT TCACTGAAAAGATAACGTGTATAGTGTTGTACATGCTAAAGGAACAGTTT TGTATTGCTTTTCTTATGCTACCCTTTTATTAAAAAGAACGAAAAATATA ATATAAACATTAGATGGATTTTTATGAATAGATTTTAATATTAGAAAACT GCGATTGTGATACTGTACACCCCTGTGTCACAGACCCGCTGGGACCCCAG CCCCACTGGAAGATTTGGCAAACATTTCATCCCCAGTAGGAAAATACCCG GTGATTTCAGCCCCACTGGGAAATTGACTTTGATTTCATCCCCATCCGAA AATAAATGTTTAAAAACTGCTCTCCAAAGCCATCCCCACTGGATTTTTTA ACCTTGAAACAATATATAATTTATATACCCATTTGAATTTCGATAGTAAT TTTTATCCCCAGTGAGAAAAAAAGTTCCATCGGGGTTGTGATACAGGGGT GTTACTTTCACTATACCTCAAAAATATTTCATCAGTAAACAATGAAAACT TCTTTCAGATTGCGGCTCAACATGGAAAAGCTTTTTTGCTAATCTGATTT TCAAGCGTCAAAAAAGAAAGCAACAATTTTTCGCGCCTCTAGAAAATTAC AATTTAGTCCTTAATTAAAAGGATACATTTTTTTGTGTATAAAATCATCA TATCTAGGATTATTATTTAATATAGAGATTTTTTTTTAACTTTTAAACTA TTTTTTAATTTTTAAACGAAAAAATATATATCATTTTACTTTGAGAAATA ACAGATCTGAAATCGAACTAAACTCTTACAAACTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000354XLOC_000354Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000600-exon-sc0000002-1575043694:1439247..1439383TCONS_00000600-exon-sc0000002-1575043694:1439247..1439383Clytia hemisphaericaexon
TCONS_00000600-exon-sc0000002-1575043694:1434045..1436152TCONS_00000600-exon-sc0000002-1575043694:1434045..1436152Clytia hemisphaericaexon
TCONS_00000600-exon-sc0000002-1510915933:1439247..1439383TCONS_00000600-exon-sc0000002-1510915933:1439247..1439383Clytia hemisphaericaexon
TCONS_00000600-exon-sc0000002-1510915933:1434045..1436152TCONS_00000600-exon-sc0000002-1510915933:1434045..1436152Clytia hemisphaericaexon
TCONS_00000600-exon-sc0000002-1491911889:1439247..1439383TCONS_00000600-exon-sc0000002-1491911889:1439247..1439383Clytia hemisphaericaexon
TCONS_00000600-exon-sc0000002-1491911889:1434045..1436152TCONS_00000600-exon-sc0000002-1491911889:1434045..1436152Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1434045..1439383 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.0865016 0 26.4531 20.5831 13.564 17.3199 2.9715 0.7737 1.45474 1.53144 2.56061 2.50286 1.30572 1.45018 4.68544 2.72745 2.36399 1.81702 2.21379 0.464779 1.08723 3.2003 1.03034 1.70438 0 0.784417 3.26837 1.98385
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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