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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000600 ID=TCONS_00000600|Name=TCONS_00000600|organism=Clytia hemisphaerica|type=transcript|length=2245bp
TTGAAGAGtcaaaagcgagtttatgtatcagaAATAAATCGAAGGAGACA
GTATAAGACAAAGTTGATATGTCGCTaaaatcgccgtccactttgctcga
cgacggtaaaaacacaaaaatacagtcatctgtttagGTACAAGAATAAC
AATGAAAAAGACCTGGGAACATACTGTCTTAGAATGGCCACCGATGAAAA
ATATGGAGCTATCGAATTTCAGTATTATGACTCTCTGCGTGTGTGGAATT
GTCTCTTTGaatgtgtattttaccgaaTGCTTCATCAGGCGAAAATCAAG
GAATAAAGACCACAAGATGATTGATTTTCCTGATTTCTTTCATTCTCTTT
TTCGACCAACCGATGAGGAGAAAGGAGAAGCTAAAATGATAAACAAAGGA
GCCAAGGATGTGAATAGTCAGTTAGATTACGCTAAATTTATATTCTTCAA
TTCACTgtattttgttttcatgttcATGTTGATAACAGTGTTGCATCAAT
ATGCTGTTATTCTGCTCATTGTTCAACATTGTGCTGTTATTGGTGTCATA
TTATTAAACTTTCTACAGTTCGGCAAACCATCTAGAGCCGTTCCCCTGAC
AGTTCTGTACGGTTTTCTATGGCTTTCATCGGTGAACACTGACTATCGCT
GGATGCTAAATAATACGATTGTCATCATGTGTATTTTATTGACCGGTTAC
ATTcgttttaaaaactttatctATCTCCAGATATTTATGTGGCTGGCTTT
TGTCTATGATGTTTATATGTTGAGCAGTATACATTTGGGAGATAGTTTCC
AGTTTTTTAGCGTACGCGAGACCACATTGGAACCACTATCGGTGCAACAT
ACCGACAATGAGGAACTATGCANTGTACGTGAGACCACATTGGAACCACT
ATCGGTGCAACATACCGACAATGAGGAACTATGCAAGACGCTATTATGCC
ACGTTTTCAACCACGACAGCACCTTTAAAATCCCGACCGCTTTTTCTATA
CAATTCGGTTCAAAGGTAGATCATGTTTTTATCGGTACAGGTGATATAAT
GATTGGTGCTTTTGTGGCTAATTTTGCGTCCCGATTTTTCAAGAAACCAA
ATTATGTTGCTTTTACAGTATTTGCATTTGGTAGTGCGGTTAGTTTATTA
TCGCATGTCGCAACCAATGCACCCTTTCCCGCTCTTTTGACAATTGTGCC
AATTTGTACGCTGGCTTTAATGGTTCTTGCTATATGGAGTAACAAATCTA
TGGAANTTCCCGCTCTTTTGACAATCGTACCAATTTGTACGCTGGCTTTA
ATGGTTCTTGCTATATGGAGTAATAAATCTATGGAATTGCTTCTGGATTG
TGAGAAATCTGATTGTAGAACAATACGCAGACAAAGCGAGGAACTCATCT
TGAAAGTTTGAGGTTTGGAGTCTATAAAGGAACAATATCCTGCACCAAAC
TCTTCTTCACTGAAAAGATAACGTGTATAGTGTTGTACATGCTAAAGGAA
CAGTTTTGTATTGCTTTTCTTATGCTAcccttttattaaaaagaacgaaa
aatataatataaacatTAGATGGATTTTTATGAATAGATTTTAATATTAG
AAAACTGCGATTGTGATActgtacacccctgtgtcacagacccgctggga
ccccagccccactggaagatTTGGCAAACATTTCATCCCCAGTAGGAAAA
TACCCGGtgatttcagccccactgggaaattgactttgatttcatcccca
tccgaaaataaatgtttaaaaactgcTCTCCAAagccatccccactggat
tttttaaccttgaaacaataTATAATTTATATACCCATTTGAATTTCGAT
AGTAATTTTTATCCCCagtgagaaaaaaagttccatcggggttgtgatac
aggggtgttacTTTCACTATAcctcaaaaatatttcatcagTAAACAATG
AAAACTTCTTTCAGATTGCGGCTCAACATGGAAAAGCTTTTTTGCTAATC
TGATTTTCAAGCGTCAAAAAAGAAAGCAACAATTTTTCGCGCCTCTAGAA
AATTACAATTTAGTCCTTAATTAAAAGGATACATTTTTTTGTGTATAAAA
TCATCATATCTAGGATTATTATTTAAtatagagatttttttttaactttt
aaactattttttaatttttaaacgaaaaaatatatatcatttTACTTTGA
GAAATAACAGATCTGAAATCGAACTAAACTCTTACAAACTTTTTT Run BLAST on NCBI transcript from alignment at sc0000002:1434045..1439383- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000600 ID=TCONS_00000600|Name=TCONS_00000600|organism=Clytia hemisphaerica|type=transcript|length=5339bp|location=Sequence derived from alignment at sc0000002:1434045..1439383- (Clytia hemisphaerica)
TTGAAGAGTCAAAAGCGAGTTTATGTATCAGAAATAAATCGAAGGAGACA
GTATAAGACAAAGTTGATATGTCGCTAAAATCGCCGTCCACTTTGCTCGA
CGACGGTAAAAACACAAAAATACAGTCATCTGTTTAGGTGAGCAAAGGTG
ATATAAATTCGTACATCGACTATATCCTTTCTGACTGACGTAAATCGACT
ATTGACTATATTTTGCCTCGACTTCATTTAACGTGGCCCTTGATATCCTC
CGATTCGCTAGAAATATGAAAGGGAGAGAGAAATTTTTGTTGTGGCTCGG
CTGTTATTATATGTTGGCACTTTGAGCCGCTTTGAGCCTCAAGTTGTACT
CATCCTGTTTTTATTTTTACAACAGGCCTGGATAACATTTTTAATACACG
ATCCCTAAAATCCTTGAAATTCAGCAATTCTAGGCTCAGCATTGTTCTTA
AATTGTTCTTGTTTTTTTTTTTGAATTTTTTAGCCTGGTCGTTATCTTAT
AAAATTGTTCTCATTAAAAAAGAGTGTATGAAAGAGCTTGTGAATTACTA
GCAGATATACCATCTTAAATCACAGCCTCAAGTTTTAAAGCAGGCTTAGT
CCATATGTAGATTGCGTATGAGATACTGGCTAGTTTTTCATCCAGAAGGT
TTCTCTTTGCGGTATAATTATTTTCTTCTTCTTTTCTCTTTCCCTTTGTA
ACTTTGTGAATTCGGCTTTTTAGATTCAGCATGATAGTTTGTTTTGAGTT
GAGAAAAAATATTTCACAATAAATGTCTTGCTCTTCAATTTAAAAAAATT
TCATCTTATCATTATTAAACCTGAGATGAGTTATCATTTACGGTTGATAT
TTTCAAAAGGAAGGAGTGTGGTAAAACATGTTCACTGTAAATAATATGGT
AAAACATTTAACGCAAGGATTGTGGTAATTTTTTTCATTCGAGCAATGTG
GCAAAACATTTACAAAACAAGGGCGTGTATTNTTTTTTTTCATTCGAGCA
ATGTTGCAAAACATTTACAAAACAAGGGCGTGTATTGTAATAATATTTTT
AATGTAAATACCTTATTACAAGAATATTAACACGAAATTTTTCCATTCGT
GTTAATAAAATGATTAGTAATATTCGTGTAATAAGGTAGTGTGGTGAAAC
ATTTTCAAAGTAAAGAGTGTGGTAAAACATTTTCAATGTGAAGAGTGTGG
CAAAGCATTTTCAATGTGAAGAGTGTGGTGAAACATTTTCAATGTAAAGA
GTGTGGCAAAGCATTTTCAATGTGAAGAGTGTGGCAAAGCATTTTCAATG
TAAAGAGTGTGGAAAAACATTTTCAAAGTAAAGAGTGTGGCAAAGCATTT
TCAATTTGAAGAGTGTGGCTAAGCATTGTCAATGTGAAGAGTGTGGAATA
GCATTTTCAAAGTAAAGAGTGTGGTAAAACATTTTCAATGTGAAGAGTGT
GGAAAAGCATTTTCAATGTAAAGAGTGTGGCAAAATATTTTCAATGTAAA
GAGTGTGGCAAAGCATTTTCAATGTGAAGAGTGTGGAAAAACATTTTCAA
TGTGAAGAATGTGGCAAAACATTTTCAATGTAAAGAGTGTGGCAAAGCAT
TTTCAATGTGAAGAGTGTGGAAAAACATTTTCAATGTGAAGAGTGAGGCA
AAACATTTTCAATGTAAAGAGTGTGGCAAAGCATTTTCAACGTGAAGAGT
GTGGAAAAACATTTTCAATGTGAAGAGTGTGGCAAAACATTTTCAATGTA
AAGAGTGTGGCAAAGCATTTTCAATGTGAAGAGTGTGGAAAAGCATTTTC
AATGTAAAGAGTGTGGCAAAACATTTTCAATGTGAAGAGTGTGGTAAAAC
ATTTTCAAATGTGAGGAGTGTGGTAAAACATTTTCAATGTGAAGAGTGTG
GTAAAAAAATTCAATGTAAGGAGTGTGGCAAAACATTTTCAATGTAAAGA
GTGTGGCAAAACATTTTCAATGTGAGGAGTGTGGTAAAACATTTTCAAAT
GTGAGGAGTGTGGTAAAACATTTTCAATGTGAAGAGTGTGGCAAAACATT
TTCAATGTAAAAAGTGTGGTAAAACATTTTCAAATGTGAGGAGTGTGGTA
AAACATTTTCAAATGTGAGGAGTGTGGTAAAACATTTTCAATGTGAAGAG
TGTGGCAAAACATTTTCAATGTAAAAAGTGTGGTAAAACATTTTCAAATG
TGAGGAGTGTGGTAAAACATTTTCAAATGTGAGGAGTGTGGTAAAACATT
TTCAATGTGAAGAGTGTGGCAAAACATTTTCAATGTAAAGAGTGTGGAAA
AGCATTTTCAATGTGAAGAGTGTGGAAAAACATTTCCAATGCGAAGAGTG
TGGTAAAATATTTTCAATGTGAGGAGTGTGGTAAAACATTTTCAAATGTG
AGGAGTGTGGTAAAACATTTTCAATGTGAAGAGTGTGGCAAAACATTTTC
AATGTAAAGAGTGTGGAAAAGCATTTTCAATGTAAAGAGTGTGGAAAAAC
ATTTCCAATGCGAAGAGTGTGGTAAAATATTTTCAATGTGAGGAGTGTGG
TAAAACATTTTCAAATGTGAGGAGTGTGGTAAAACATTTTCAATGTGAAG
AGTGTGGCAAAACATTTTCAATGTAAAGAGTGTGGTAAAACATTTTCAAA
TGTGAGGAGTGTGGTAAAACATTTTCAAATGTGAGGAGTGTGGTAAAACA
TTTTCAATGTGAAGAGTGTGGCAAAAAATTTTCAATGTAAAGAGTGTGGA
AAAGCATTTTCAATGTGAAGAGTGTGGAAAAACATTTCCAATGTGAGGAG
TGTGGTAAAACATTTTCAATGTGAGGAGTGTGGTAAAACATTTTCAAAGT
AAAGAGTGTGGCAAAACAAACATTTTCAATGTGAAGAGTGTGGAAAAACA
TTTCCAATGTGAGGAGTGTGGTAAAACATTTTCAATATGAGGAGTGTGGT
AAAACATTTTCAATGTAAAGAGTGTGGCAAAACATTTTCAATGTGAAGAG
TGTGGCAAAACATTGTCAATGTGAAGAGTGTGGCAAAACATTTTCAATGT
GAAGAGTGTGGCAAAACATTTTCAATGGTAGGAGCGTGGTAACATTTCCA
AATGTGAAGGGTTTGGTAAAATGTGTAGTTAACAAACATATTCAATACAA
AGGCAGTGACCAATAAAATAGTAGAACTCACCTCTCGTCTCTTCTGAATC
TTGCTATTCATGTTTTTATCGTTTCCTTTAGGTACAAGAATAACAATGAA
AAAGACCTGGGAACATACTGTCTTAGAATGGCCACCGATGAAAAATATGG
AGCTATCGAATTTCAGTATTATGACTCTCTGCGTGTGTGGAATTGTCTCT
TTGAATGTGTATTTTACCGAATGCTTCATCAGGCGAAAATCAAGGAATAA
AGACCACAAGATGATTGATTTTCCTGATTTCTTTCATTCTCTTTTTCGAC
CAACCGATGAGGAGAAAGGAGAAGCTAAAATGATAAACAAAGGAGCCAAG
GATGTGAATAGTCAGTTAGATTACGCTAAATTTATATTCTTCAATTCACT
GTATTTTGTTTTCATGTTCATGTTGATAACAGTGTTGCATCAATATGCTG
TTATTCTGCTCATTGTTCAACATTGTGCTGTTATTGGTGTCATATTATTA
AACTTTCTACAGTTCGGCAAACCATCTAGAGCCGTTCCCCTGACAGTTCT
GTACGGTTTTCTATGGCTTTCATCGGTGAACACTGACTATCGCTGGATGC
TAAATAATACGATTGTCATCATGTGTATTTTATTGACCGGTTACATTCGT
TTTAAAAACTTTATCTATCTCCAGATATTTATGTGGCTGGCTTTTGTCTA
TGATGTTTATATGTTGAGCAGTATACATTTGGGAGATAGTTTCCAGTTTT
TTAGCGTACGCGAGACCACATTGGAACCACTATCGGTGCAACATACCGAC
AATGAGGAACTATGCANTGTACGTGAGACCACATTGGAACCACTATCGGT
GCAACATACCGACAATGAGGAACTATGCAAGACGCTATTATGCCACGTTT
TCAACCACGACAGCACCTTTAAAATCCCGACCGCTTTTTCTATACAATTC
GGTTCAAAGGTAGATCATGTTTTTATCGGTACAGGTGATATAATGATTGG
TGCTTTTGTGGCTAATTTTGCGTCCCGATTTTTCAAGAAACCAAATTATG
TTGCTTTTACAGTATTTGCATTTGGTAGTGCGGTTAGTTTATTATCGCAT
GTCGCAACCAATGCACCCTTTCCCGCTCTTTTGACAATTGTGCCAATTTG
TACGCTGGCTTTAATGGTTCTTGCTATATGGAGTAACAAATCTATGGAAN
TTCCCGCTCTTTTGACAATCGTACCAATTTGTACGCTGGCTTTAATGGTT
CTTGCTATATGGAGTAATAAATCTATGGAATTGCTTCTGGATTGTGAGAA
ATCTGATTGTAGAACAATACGCAGACAAAGCGAGGAACTCATCTTGAAAG
TTTGAGGTTTGGAGTCTATAAAGGAACAATATCCTGCACCAAACTCTTCT
TCACTGAAAAGATAACGTGTATAGTGTTGTACATGCTAAAGGAACAGTTT
TGTATTGCTTTTCTTATGCTACCCTTTTATTAAAAAGAACGAAAAATATA
ATATAAACATTAGATGGATTTTTATGAATAGATTTTAATATTAGAAAACT
GCGATTGTGATACTGTACACCCCTGTGTCACAGACCCGCTGGGACCCCAG
CCCCACTGGAAGATTTGGCAAACATTTCATCCCCAGTAGGAAAATACCCG
GTGATTTCAGCCCCACTGGGAAATTGACTTTGATTTCATCCCCATCCGAA
AATAAATGTTTAAAAACTGCTCTCCAAAGCCATCCCCACTGGATTTTTTA
ACCTTGAAACAATATATAATTTATATACCCATTTGAATTTCGATAGTAAT
TTTTATCCCCAGTGAGAAAAAAAGTTCCATCGGGGTTGTGATACAGGGGT
GTTACTTTCACTATACCTCAAAAATATTTCATCAGTAAACAATGAAAACT
TCTTTCAGATTGCGGCTCAACATGGAAAAGCTTTTTTGCTAATCTGATTT
TCAAGCGTCAAAAAAGAAAGCAACAATTTTTCGCGCCTCTAGAAAATTAC
AATTTAGTCCTTAATTAAAAGGATACATTTTTTTGTGTATAAAATCATCA
TATCTAGGATTATTATTTAATATAGAGATTTTTTTTTAACTTTTAAACTA
TTTTTTAATTTTTAAACGAAAAAATATATATCATTTTACTTTGAGAAATA
ACAGATCTGAAATCGAACTAAACTCTTACAAACTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000600-exon-sc0000002-1575043694:1439247..1439383 | TCONS_00000600-exon-sc0000002-1575043694:1439247..1439383 | Clytia hemisphaerica | exon |
| TCONS_00000600-exon-sc0000002-1575043694:1434045..1436152 | TCONS_00000600-exon-sc0000002-1575043694:1434045..1436152 | Clytia hemisphaerica | exon |
| TCONS_00000600-exon-sc0000002-1510915933:1439247..1439383 | TCONS_00000600-exon-sc0000002-1510915933:1439247..1439383 | Clytia hemisphaerica | exon |
| TCONS_00000600-exon-sc0000002-1510915933:1434045..1436152 | TCONS_00000600-exon-sc0000002-1510915933:1434045..1436152 | Clytia hemisphaerica | exon |
| TCONS_00000600-exon-sc0000002-1491911889:1439247..1439383 | TCONS_00000600-exon-sc0000002-1491911889:1439247..1439383 | Clytia hemisphaerica | exon |
| TCONS_00000600-exon-sc0000002-1491911889:1434045..1436152 | TCONS_00000600-exon-sc0000002-1491911889:1434045..1436152 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1434045..1439383 - |
Blast
The following BLAST results are available for this feature:
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