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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000593 ID=TCONS_00000593|Name=TCONS_00000593|organism=Clytia hemisphaerica|type=transcript|length=790bp
GTTTTAGATAAAACATATAGAGCatacaaaaagttataaaaaagttACAG
CATGGATAAATTCGTGATTAGAACACCACGTGATCAGGTCAATgacaaac
aaaatggtagacctCAGAAGCCAAGGAAGAAACAGACCACTATTGAGTCA
TTATCGAGGGTTGTTATCGTGGAACAGGTGCATCGTCAGaaagaaatcct
gaaaaacgCAGAAACCACACCACAATTTCTCATCTCAACACTAAAAGACC
TGCACAAAGCTATCCCTTCAAAAAGTGTTCTACTAGAGACGAAAGTTGGT
CACGTGGTCAATAAATTACGTCATCATTCCGATCCAGAGGTCAAAGAACA
GGCGCGTTTACTACTTAAGAAATGGAAGAAGTTTTATAGAGAGATCAATG
CACGCCAACCAATAGATGTACGGTCTGACTTGAAGACGGAAAAGTTCCGA
ACAAAAGCAAAACAGCTTTTAAGGAAAGCAATCGGCATTAAAATCATTGG
ATTATGGAGTCTCCATTTCTAACGCAAACGTGTCTTCAACTCGAACAAGT
TGATAGACCCTTCAAATTAGCAAACTCTATAAACCAGTCTCAAAAACTgg
gacaaatttgtgttccccgtgcgtgttctaATTCTAGAAATTCCACTGTA
TCTATGCTTGTTCTTATACTTTTAAATAACTTTAGTTTgggcaaaaatga
aaaaatgtagtgtttctggaaaccggccgggtgaaaaaaaataattttct
gacccggccgcagactacattagtagttgatacatatTCA Run BLAST on NCBI transcript from alignment at sc0000002:1201244..1202743- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000593 ID=TCONS_00000593|Name=TCONS_00000593|organism=Clytia hemisphaerica|type=transcript|length=1500bp|location=Sequence derived from alignment at sc0000002:1201244..1202743- (Clytia hemisphaerica)
GTTTTAGATAAAACATATAGAGCATACAAAAAGTTATAAAAAAGTTACAG
CATGGATAAATTCGTGATTAGAACACCACGTGATCAGGTCAATGACAAAC
AAAATGGTAGACCTCAGAAGCCAAGGAAGAAACAGACCACTATTGAGTCA
TTATCGGTGAGCAATTGAATTTAATGCACTGCACAATGGTAAAGTACACA
GGATTTTTCATTGAAACTTCACACCCCCTTCTCACTTTTCACAGACCCGG
TAAGTTTTTTTCAGCCAGTGGGAGTAGAAATATCCGACAGGGTCAACTTT
TGGTCATTCCAAGAAACCATTTTTTAGGGTTTGTTTTAAAAAGTAATTGA
AACTTTGAATCTGATAGCATCCACAATCCAGGTAGTCAATAGATGGTTTT
TTATGTTTTGTTTTTAAGTTACGTAACTTCTGCAATTATGAAAGCAAACG
TTCGATTTGCGAATGTATCCTCTACATGTTCGAATGTTTGCTTCCATAAT
GGCTGAAATTACGTAAGATAGCCAAACATGAAAAACCTCTATACTGTATT
TACAATCGAAATCAAATCTTTTTAGAGGGTTGTTATCGTGGAACAGGTGC
ATCGTCAGAAAGAAATCCTGAAAAACGCAGAAACCACACCACAATTTCTC
ATCTCAACACTAAAAGACCTGCACAAAGCTATCCCTTCAAAAAGTGTTCT
ACTAGAGACGAAAGTTGGTCACGTGGTCAATAAATTACGTCATCATTCCG
ATCCAGAGGTCAAAGAACAGGCGCGTTTACTACTTAAGAAATGGAAGAAG
TTTTATAGAGAGATCAATGCACGCCAACCAATAGATGTACGGTCTGACTT
GAAGACGGAAAAGTTCCGAACAAAAGCAAAACAGCTTTTAAGGAAAGCAA
TCGGCATTAAAGTAAGTCGTATTTGATTTCTTTATTATCCTTTTTGCTGG
ACAAGTTTTTAAAAATCCTTCATGTGCAGATTGAACAGATTTCCCTTCTT
TTATAGGAAGTTGTCGTTTTTGTTTAGGTTTCAGTTTTCGTTATTTTTCT
TTGTTCAGAATGGCCCTTCATGGAATTAATTCTTCAGATGCTTAAAAGCT
TTTGAATTTCGGAGAATGCCACTTTAAAACAAATGTTATTGATTATTACC
CGCATCTGCATTCTTTGTCCTTAGCAGTAATAAATAGCCCCTGTTTTTTT
AGATCATTGGATTATGGAGTCTCCATTTCTAACGCAAACGTGTCTTCAAC
TCGAACAAGTTGATAGACCCTTCAAATTAGCAAACTCTATAAACCAGTCT
CAAAAACTGGGACAAATTTGTGTTCCCCGTGCGTGTTCTAATTCTAGAAA
TTCCACTGTATCTATGCTTGTTCTTATACTTTTAAATAACTTTAGTTTGG
GCAAAAATGAAAAAATGTAGTGTTTCTGGAAACCGGCCGGGTGAAAAAAA
ATAATTTTCTGACCCGGCCGCAGACTACATTAGTAGTTGATACATATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000593-exon-sc0000002-1575043694:1202588..1202743 | TCONS_00000593-exon-sc0000002-1575043694:1202588..1202743 | Clytia hemisphaerica | exon |
| TCONS_00000593-exon-sc0000002-1575043694:1201833..1202168 | TCONS_00000593-exon-sc0000002-1575043694:1201833..1202168 | Clytia hemisphaerica | exon |
| TCONS_00000593-exon-sc0000002-1575043694:1201244..1201541 | TCONS_00000593-exon-sc0000002-1575043694:1201244..1201541 | Clytia hemisphaerica | exon |
| TCONS_00000593-exon-sc0000002-1510915933:1202588..1202743 | TCONS_00000593-exon-sc0000002-1510915933:1202588..1202743 | Clytia hemisphaerica | exon |
| TCONS_00000593-exon-sc0000002-1510915933:1201833..1202168 | TCONS_00000593-exon-sc0000002-1510915933:1201833..1202168 | Clytia hemisphaerica | exon |
| TCONS_00000593-exon-sc0000002-1510915933:1201244..1201541 | TCONS_00000593-exon-sc0000002-1510915933:1201244..1201541 | Clytia hemisphaerica | exon |
| TCONS_00000593-exon-sc0000002-1491911889:1202588..1202743 | TCONS_00000593-exon-sc0000002-1491911889:1202588..1202743 | Clytia hemisphaerica | exon |
| TCONS_00000593-exon-sc0000002-1491911889:1201833..1202168 | TCONS_00000593-exon-sc0000002-1491911889:1201833..1202168 | Clytia hemisphaerica | exon |
| TCONS_00000593-exon-sc0000002-1491911889:1201244..1201541 | TCONS_00000593-exon-sc0000002-1491911889:1201244..1201541 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1201244..1202743 - |
Blast
BLAST of TCONS_00000593 vs. Swiss-Prot (Human)
Match: TEAN2 (Transcription elongation factor A N-terminal and central domain-containing protein 2 OS=Homo sapiens GN=TCEANC2 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.558e-32 Identity = 74/169 (43.79%), Postives = 103/169 (60.95%), Query Frame = 1
Query: 52 MDKFVIRTPRDQVNDKQNGRPQKPRKKQTTIESLSRVVIVEQVHRQKEILKNAETTPQFLISTLKDLHKAIPSKSVLLETKVGHVVNKLRHHSDPEVKEQARLLLKKWKKFYREINARQPIDVRSDLKTEKFRTKAKQLLRKAIGIKIIGLWSLHF*RKRVFNSNKLID 558
MDKFVIRTPR Q N Q KQ TIESL RVV+VE + R K +L+ + T + L+ L++L K IPS+ VL T++GH VNK+R HSD EV AR + +WK F + + R I+VRSD KTE R A++LL +A+ +K+ L + R+ ++LI+
Sbjct: 1 MDKFVIRTPRIQ-NSPQKKDSGGKVYKQATIESLKRVVVVEDIKRWKTMLELPDQTKENLVEALQELKKKIPSREVLKSTRIGHTVNKMRKHSDSEVASLAREVYTEWKTFTEKHSNRPSIEVRSDPKTESLRKNAQKLLSEALELKMDHLLVENIERETFHLCSRLIN 168
The following BLAST results are available for this feature:
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