Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00000585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000585
Unique NameTCONS_00000585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000585 ID=TCONS_00000585|Name=TCONS_00000585|organism=Clytia hemisphaerica|type=transcript|length=1630bp
TGAATGTGTAAATCTTCACAATACTCTTCCAAAATTAAATGTCTGTCTGT
TTTTATCATTTAGAGAAATAATTATAAATAGATTAAAATACACTTGAAGA
AATGGTTAATCTTGCACAATATCTAAGATGTGAGATCATTCACAAGAAAA
CAGAATTTGCTGAACCGGCAGCTCGTATCATTGCAAAACAATGGAATCAT
AAAGACTTTGAACTGAATCGAAATTTGAGAAGTATGGTACAAGATGGTCG
TGATTCATTACCATGTCATTTAGCACTGGTTTTGAATATACCTCAAGATG
TAGAAATTCCTGGTGTTACTAACAGCTCTGGAGATGTTGAACAGTCTAAG
AATATTGATCACAGTGATGAAATAACCAGCTCCAGCTCTGGAGATCAGGA
TAAAAATTCTCAAGAATTGAGACTACCAGCAGGCGAGGATATAGTCGTTG
GACACGTCAAGATTGCCAAAGCTGATGGACGATCAGATGGTGCTTGTTGT
ATTTCTTATTCATTAGTTGTGGATAGTGATTACCGTGGTTTAGGTTTTGG
CAGAGTGTTGACTGAAAGAGCAGAAGATTATGCTCGATCGCTTGGTTTAT
CCTACATGTATCTCTCCACAGATGACAAGGTCACATTTTACGAGCATCTT
GGTTACAATCAATGCGAAGCCGTCTCATCCCTTGGAAGCAACTCCAAACT
CTTGAACGCCAACCAAGTATCCGCATTAGAAGGTCTATTCGCTAAACGCA
TCAACATGTCACCACCTGCAGATTCGAACTGTAATACTTGGTTAAGGAAA
CGATTACTGGATGAATATCCCATAAAACCAGCTATGGAGAATGTTAAATT
GTTGCCAATTTTGTCCCAAAAGATGGCTAATCTGTATGGTGATGTTGAAT
CAGTGAAATGTTGCAATTATGTTTGCTTTTGTATACCAATACCATGGCAA
CAACAAGCTGGACCGTCCTGTGGTGTGTCGGTTCTCAATATGGCAAATGA
AAGCGTGAAAGGCCGCTCAACGAAACGAGAGGGAGAAGAGTTGAATATAT
GTAAGGAATGTGTAAAAGATGCTTCGATGGAGAAAATCGAGTCTGGTTTA
AGTGCACTGAGAACGGCACTCAAACTTGGAGTCAGTTCAGACGGAGAGTT
ATTCTGTGCTTATAATTGTTCACTTGTCGGCCAGCTAGCCCTGGGTTTAC
ATACTAATGTTCTGACGAACTGGGACGTTTCTGTTTTAGTGAACGAGATT
TTAGCCGGATATCCGATCCTTGTTCCGTATGATCGTAGCCTGAGTGATCA
TCGACCAGGCACATTCCTGGGTGGTAAAGCACATTGGTGTATTGTAGCTG
GGTTGATTATACCAGTCTCGGGAAATCGGGATTCGGAATTGATAAGCCCG
ATTGATTTCCCGAATGCTGTTTCGACATTATCGTTAGTGGATGACCGTGA
AGCGTTCAAAGAAAAATACGAGGAAggaatttcgaaaattgatgAAACAT
TGATTCTGGTTTGTATTCACAGCATGTCAAAATCACCGTTCCTTTGTACG
TTCAAAGAGCTGCGTGATTCGAATCAACAACTGGAATGctcaaaatccaa
attttacATGGCACCTGAAAGCTTGTCCCA
Run BLAST on NCBI

transcript from alignment at sc0000002:1186173..1189345-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000585 ID=TCONS_00000585|Name=TCONS_00000585|organism=Clytia hemisphaerica|type=transcript|length=3173bp|location=Sequence derived from alignment at sc0000002:1186173..1189345- (Clytia hemisphaerica)
TGAATGTGTAAATCTTCACAATACTCTTCCAAAATTAAATGTCTGTCTGT TTTTATCATTTAGAGAAATAATTATAAATAGATTAAAATACACTTGAAGA AATGGTTAATCTTGCACAATATCTAAGATGTGAGATCATTCACAAGAAAA CAGAATTTGCTGAACCGGCAGCTCGTATCATTGCAAAACAATGGAATCAT AAAGACTTTGAACTGAATCGAAATTTGAGAAGTATGGTACAAGATGGTCG TGATTCATTACCATGTCATTTAGCACTGGTTTTGAATATACCTCAAGATG TAGAAATTCCTGGTGTTACTAACAGCTCTGGAGATGTTGAACAGTCTAAG AATATTGATCACAGTGATGAAATAACCAGCTCCAGCTCTGGAGATCAGGA TAAAAATTCTCAAGAATTGAGACTACCAGCAGGCGAGGATATAGTCGTTG GACACGTCAAGATTGCCAAAGCTGATGGACGATCAGATGGTGCTTGTTGT ATTTCTTATTCATTAGTTGTGGATAGTGATTACCGTGGTTTAGGTTTGTA TGACATAATTGCTTTGTAACAGTGTTCATAGTTCCTCCGTGTAAGACGGA TTTCGGAAAAAAAAAGGTTAGGAGAGAGCGCCACTTTTTCTCCCCGCTAA AGATTTAAGTAATGGTGGTTTAGCCCCGGGGAAGCAATAAAATTCCTTAT ACATTTAGGGATAGAAGTGGGAAGTAACTGACTTTTTTGGGCTAGTGATT AAAACTTCCCCCGACTTTCCATAGCCTTCTGCCCATCCTCCAACGTTTTT ACCCCGAGTAAAACTAGCGTTGCGCCAAATGACTAGATGTGCCAAAAATA CATTAATATATTATTTCGAGCGTGTTGATGTAAGCTTTTTAGAAATTTTT AAAAATTTGGAAATGAAGATGAAGGTTGAAAGGGAACTTATACTTTTCCG AAACTTTTAACCACACTGATTTTAAATATGCATTCAGATTTTTTATATCT CTTTTGGTATCTCTTTTGAATCAAAAGTTACAACCTTCGTTGATAGGTCC AAATAGGCAATAAATTAAAATCCCGTTTGACGTTTCTCAAAGTCCTAACA TCATTTTCTTCCTATATGAATTTACACATTTGAAACTGAAAGGACGTGTC CCATTTTCTAGTTGAAGGGGACTAATCTCAAAAATTTTTCGGAGAAAAGT GACTAAAATTTTTTGGGGTGACTAAATTTATTCCTACTTGTCCCCGATAA GGTTTATGAAAAAGTCTAGAGCACTAAAACAACATTTGATTTTGCAGGTT TTGGCAGAGTGTTGACTGAAAGAGCAGAAGATTATGCTCGATCGCTTGGT TTATCCTACATGTATCTCTCCACAGATGACAAGGTGAAATACTAACAAAG AGTTTTCTTAAAAAATCCTTTAAATGCCATTAGAATAATATTATTTCAAC AGTGTAGTGTGACTTTACGGAACTGACCCTTTTTTCAGACACCTGGCGAA CGGAAAAAAAAGGTTTTCCTATAAATTTATTGATAGCTGCACATTTTTAT CTACAATGGTGAAATACTATAAATTATCCTTATTTTCACTCTACACCAGT TAAAAAGATTCTTCAATTTAGCTGTCATGTCTCCTTTTTATCCCCTTGCT TTGACTCCACCTGTCTTTTATAGTCAGTGCGCGCAATCACTCTTACACAA TCACTCTTAATACTAAAGAGGACTGAAACGGGTCTTTTACAAATTACATT ACAACCAACTCGCGCCTCGTTTTGGAAATAATTTACTGACAACTTATCCC AAATGAATGTCTTAGAGGTATAATATTTGCCCTACAAAACGACTGGAGGT CTCAAGAGAGATAATCACCTTGGTACCGTAAATTGGTCTAATGTCGACAT ACCTCATCTAATCCTGATACTCTTCTTTAGAGAATGATATTATGAAGGCG AAGATCACTAATTGAAACTATATCCTTAGATTAGCAGTCAGGGAGGAAAA ACCTTTTATGAACCTTCGTATTATTCCTATCTCTAAAAAGAAGGGTGTCG AAATTAGATGAAGGATGTCGACATTAGACCAACTTACTTTAATTGCTACA AGAGGAGACAGAGGTTGAATGTGACTTAATTAATGAAAATGTATATTATT GTTTTCTCCTTTAACTTTCTAGGTCACATTTTACGAGCATCTTGGTTACA ATCAATGCGAAGCCGTCTCATCCCTTGGAAGCAACTCCAAACTCTTGAAC GCCAACCAAGTATCCGCATTAGAAGGTCTATTCGCTAAACGCATCAACAT GTCACCACCTGCAGATTCGAACTGTAATACTTGGTTAAGGAAACGATTAC TGGATGAATATCCCATAAAACCAGCTATGGAGAATGTTAAATTGTTGCCA ATTTTGTCCCAAAAGATGGCTAATCTGTATGGTGATGTTGAATCAGTGAA ATGTTGCAATTATGTTTGCTTTTGTATACCAATACCATGGCAACAACAAG CTGGACCGTCCTGTGGTGTGTCGGTTCTCAATATGGCAAATGAAAGCGTG AAAGGCCGCTCAACGAAACGAGAGGGAGAAGAGTTGAATATATGTAAGGA ATGTGTAAAAGATGCTTCGATGGAGAAAATCGAGTCTGGTTTAAGTGCAC TGAGAACGGCACTCAAACTTGGAGTCAGTTCAGACGGAGAGTTATTCTGT GCTTATAATTGTTCACTTGTCGGCCAGCTAGCCCTGGGTTTACATACTAA TGTTCTGACGAACTGGGACGTTTCTGTTTTAGTGAACGAGATTTTAGCCG GATATCCGATCCTTGTTCCGTATGATCGTAGCCTGAGTGATCATCGACCA GGCACATTCCTGGGTGGTAAAGCACATTGGTGTATTGTAGCTGGGTTGAT TATACCAGTCTCGGGAAATCGGGATTCGGAATTGATAAGCCCGATTGATT TCCCGAATGCTGTTTCGACATTATCGTTAGTGGATGACCGTGAAGCGTTC AAAGAAAAATACGAGGAAGGAATTTCGAAAATTGATGAAACATTGATTCT GGTTTGTATTCACAGCATGTCAAAATCACCGTTCCTTTGTACGTTCAAAG AGCTGCGTGATTCGAATCAACAACTGGAATGCTCAAAATCCAAATTTTAC ATGGCACCTGAAAGCTTGTCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000346XLOC_000346Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000585-exon-sc0000002-1575043694:1188803..1189345TCONS_00000585-exon-sc0000002-1575043694:1188803..1189345Clytia hemisphaericaexon
TCONS_00000585-exon-sc0000002-1575043694:1187963..1188048TCONS_00000585-exon-sc0000002-1575043694:1187963..1188048Clytia hemisphaericaexon
TCONS_00000585-exon-sc0000002-1575043694:1186173..1187173TCONS_00000585-exon-sc0000002-1575043694:1186173..1187173Clytia hemisphaericaexon
TCONS_00000585-exon-sc0000002-1510915933:1188803..1189345TCONS_00000585-exon-sc0000002-1510915933:1188803..1189345Clytia hemisphaericaexon
TCONS_00000585-exon-sc0000002-1510915933:1187963..1188048TCONS_00000585-exon-sc0000002-1510915933:1187963..1188048Clytia hemisphaericaexon
TCONS_00000585-exon-sc0000002-1510915933:1186173..1187173TCONS_00000585-exon-sc0000002-1510915933:1186173..1187173Clytia hemisphaericaexon
TCONS_00000585-exon-sc0000002-1491911889:1188803..1189345TCONS_00000585-exon-sc0000002-1491911889:1188803..1189345Clytia hemisphaericaexon
TCONS_00000585-exon-sc0000002-1491911889:1187963..1188048TCONS_00000585-exon-sc0000002-1491911889:1187963..1188048Clytia hemisphaericaexon
TCONS_00000585-exon-sc0000002-1491911889:1186173..1187173TCONS_00000585-exon-sc0000002-1491911889:1186173..1187173Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1186173..1189345 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.58957 8.12981 1.44448 1.36153 4.5022 4.14339 4.47142 4.64925 1.81303 4.55196 2.50095 1.17957 2.87811 1.55517 3.72934 4.24165 5.51539 5.72167 2.69525 2.73231 1.6537 1.50011 13.5175 12.8097 1.15514 1.67158 2.48354 2.02365 8.02609 10.2937
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top