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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000582 ID=TCONS_00000582|Name=TCONS_00000582|organism=Clytia hemisphaerica|type=transcript|length=2365bpRun BLAST on NCBI transcript from alignment at sc0000002:1132381..1165239- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000582 ID=TCONS_00000582|Name=TCONS_00000582|organism=Clytia hemisphaerica|type=transcript|length=32859bp|location=Sequence derived from alignment at sc0000002:1132381..1165239- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000582 vs. Swiss-Prot (Human)
Match: HELQ (Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2) HSP 1 Score: 296.204 bits (757), Expect = 1.323e-85 Identity = 141/247 (57.09%), Postives = 188/247 (76.11%), Query Frame = 2
Query: 644 VNMNLTDIESSANSYPENTFYGLPMTVKDMLLQIRGIPSLYEWQNDCLNLSSVINRKNIVYSLPTSGGKTLVAEILMMQEILVKQRNVILVLPYVSIVQEKVRDLSPFAVQLGFHIEEYASRKGCLPPKKRRRKNSIFIATIEKANAIINSLVENERTEELGKVVVDELHMIGEGGGRAALLEILLTKIMFKFTHVQIIGMSATLGNMDDLKKFLNAQIFTNEFRPVELTEYVKLEDTLYKVDSMAK 1384
+N+ +ESS+N FY LP V+D+ Q +GI LYEWQ+ CL L+SV RKN++YSLPTSGGKTLVAEILM+QE+L +++V+++LPYV+IVQEK+ LS F ++LGF +EEYA KG PP KRR K S++IATIEK ++++NSL+E R + LG VVVDELHMIGE G R A LE+ L KI++ QIIGMSATL N++DL+KFL A+ +T++FRPVEL EY+K+ DT+Y+VDS A+
Sbjct: 299 INVAKKTVESSSNDL--GPFYSLPSKVRDLYAQFKGIEKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMIGE-GSRGATLEMTLAKILYTSKTTQIIGMSATLNNVEDLQKFLQAEYYTSQFRPVELKEYLKINDTIYEVDSKAE 542 HSP 2 Score: 182.57 bits (462), Expect = 1.931e-47 Identity = 90/142 (63.38%), Postives = 115/142 (80.99%), Query Frame = 3
Query: 1446 HREEEKYALLQNIHNVANG-VCKTLARTIPFGIAYHHSGLTMDERKLVEEAYSSGVXXXXXXTSTLAAGVNLPAKRVILRSPYVGNQCMSRAQYKQMIGRAGRAGIDSSGESILVIAKKDKNKLHKLIRGAMGSCSSSLMYE 1868
H+E+EK +++N+ N+ NG +C L RTIPFG+AYHHSGLT DERKL+EEAYS+GVLCL CTSTLAAGVNLPA+RVILR+PYV + + R QYKQMIGRAGRAGID+ GESIL++ +KDK ++ +LI + +C S L+ E
Sbjct: 608 HKEKEKCEVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRNQYKQMIGRAGRAGIDTIGESILILQEKDKQQVLELITKPLENCYSHLVQE 749 HSP 3 Score: 97.0561 bits (240), Expect = 1.754e-20 Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 2
Query: 2093 ITDIGRATVKGCIDIDFVPTLYKDLKKSLQGIVLATELHLLYLATPIDQTAILTVKWMTYYRQFSKLNENETKAAEMIGIQEGMLMKKATG 2365
IT +GRA+ KG ID+ + LY+DLKK L+G+VL + LHL+YL TP D + WM Y+RQFS+L+ E A ++G+ E + KKA+G
Sbjct: 830 ITKLGRASFKGTIDLAYCDILYRDLKKGLEGLVLESLLHLIYLTTPYDLVSQCNPDWMIYFRQFSQLSPAEQNVAAILGVSESFIGKKASG 920 The following BLAST results are available for this feature:
BLAST of TCONS_00000582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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