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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000578 ID=TCONS_00000578|Name=TCONS_00000578|organism=Clytia hemisphaerica|type=transcript|length=2253bp
aaataagggaaaaagtgaaaaacctTTCGTGATTTTTCATTCTCTGTGAA
TGAACTCTCGTTCAAGCAGAGATAGAAGGGAGTCGGTTGCCTTTGTGTGT
TTGGAGCAAATTATTTGAGAGGAGAGAACTAAAAGATTGATACAGAACGA
AAAAGCAACCAAAGAAATAACACTGCGatacgaaaaatatttcagaattt
taCAACCGTCACTttgatttttagaaatatttttcgcATAAACAACATAC
AATATGAGAGAGTGTATTTCCATCCACATTGGACAAGCTGGTTGTCAAAT
TGGCAATGCATGTTGGGAATTATACTGCATGGAACACAATATCAAACCTG
ATGGTCTAATGAACGAAGAAGGGTCACAACGAGATGATGAATCTTTCAGT
ACTTTCTTCAATGAAACCGGGAATGGTAAACATGTACCACGTGCTCTCTT
CCTTGACCTGGAACCTAATGTTATTGATGAAATCCGAACAGGAGCATACA
GTAAATTGTATCACCCGGAACAGTTGATCAGTGGAAGTGAAGATGCAGCT
AATAATTATGCTCGTGGTCATTACACAGTTGGAAAACAAATGATCGATGA
TGTCTTGGATAAAGTCCGAAGGTTAACCGAGAACTGTACCGGTCTTCAAG
GTTTCTTAATGTTCCATTCCTTTGGTGGAGGTACTGGATCTGGTTTCACA
TCTCTCCTCATGGAACGAATCACAGCCGACTATAGCCGTAAATCTAAACT
GGAGTTTGCAATCTATCCAGCTCCTCGAGTATCTACAGCTGTCGTTGAGC
CATATAATGCTTGCTTAACGACGCATACGACATTGGATAATTCAGATTGT
GCTTTCATGGTTGATAACGAAGCTATCTATGATATCTGTAGACGCAATCT
TGATATTGATCGTCCATCCTATACTAACTTGAATCGGTTGATTGGTCAAA
TTGTCTCCTCGATCACAGCTTCGTTGCGTTTCGATGGCTCCTTGAATGTT
GATCTGAATGAGTTTCAAACCAACTTGGTCCCATACCCCAGAATTCATTT
CCCAGTTGCCACCATAGCTCCAGTTCTGTCAGCTGCGAAAGCGTACCATG
AGAAAATCTCCGTATCGGAAATAACACATCAATGCTTCGAGCCTGCAAAC
CAAATGGTGAAGTGTGATCCAAGGCTAGGTAAATACATGGCTGTGTGCTT
GTTATACCGTGGTGATGTTGTCCCTAAAGATGTTAATACGGCAATTGCTC
atttaaaaacgaaaaagaataTCCAATTCGTTGATTGGTGTCCAACTGGA
TTCAAAGTTGGAATCAATTACCAACCACCAACGACAGTGCCTGGTGGTGA
TCTCGCTAAAGTTCCTCGGTCTGTCTGCATGTTATCTAACACAACTGCTG
TTGCTGAGGCCTGGGCTCGATTGGATCATAAGTTCGATTTGATGTATGCT
AAACGTGCTTTTATACATTGGTATGTCGGTGAAGGGATGGAGGAAGGTGA
ATTTGCTGAAGCCAGGGAGAATATGGCATCTTTGGAGAGAGATTATGAAG
AAGTTGCTTCAGATTCAGTGGCTGATGATTATGATGAAGATGAGGAGGGA
GAAGGAAGCGGTGAAGAATACTGAAGATCGTGTATTTCTCCCATTGCATT
CACAGCTAAGTCTTTAAGATATCTTtagaattttatgaatttttgattga
aagcaAATTTAGAATGTATGATACTTAGAGATTgttgatttaaaaataaa
tttgaaaataatttacacACCCCAACCTAAGCTACTATCCCGgataaaat
tgcatttttgatAACAACAAGGGAGATATCCGTGGTGGTTTGTGGGTTCC
TCTAAAATTAGGAGAGTTTTATTAAATCTTTCACTTTTTGAGCGTTTGTC
CCGGGGTAATGGAGCCTGTTAAATATCTTCAGGACCACTTGGACCAGTGG
CACGTgaccgtacccaattttgcctttTCTCTGTTTTGAACTATCACAGC
AAATCAAAAAATGTCTGGaataatttcattgaatttactTCTTGCTAAGG
TTAactgtaatatttttttgcatttgtGTACATAGATTATGGCGAttatc
ataaaattttatgttaATTTTAGAAATagggaaaatcaaaattatctaAA
TGCCGAAACACCTCTCTTGGTAAGTTccttaaaagttcaaaaatcaaTGG
TCGTAATGTCTCTACTCTCTACTAAAGTTCTACTTCCAAGCAATATAAGG
GGG Run BLAST on NCBI transcript from alignment at sc0000002:1071636..1075800- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000578 ID=TCONS_00000578|Name=TCONS_00000578|organism=Clytia hemisphaerica|type=transcript|length=4165bp|location=Sequence derived from alignment at sc0000002:1071636..1075800- (Clytia hemisphaerica)
AAATAAGGGAAAAAGTGAAAAACCTTTCGTGATTTTTCATTCTCTGTGAA
TGAACTCTCGTTCAAGCAGAGATAGAAGGGAGTCGGTTGCCTTTGTGTGT
TTGGAGCAAATTATTTGAGAGGAGAGAACTAAAAGATTGATACAGAACGA
AAAAGCAACCAAAGAAATAACACTGCGATACGAAAAATATTTCAGAATTT
TACAACCGTCACTTTGATTTTTAGAAATATTTTTCGCATAAACAACATAC
AATATGGTAAGTTGCTTTTCCTAATGCTTTTATGTACTTCTACCTTTAAC
ATTTTATTCTTCTTCNTTTAAACAACATACAATATGGTAAGTGTTTTTTA
ATGTACTTCTACCTTTAACATTTTATTCTTCTTCGTTTTCATTTTTTCTT
CAATATTTACTATATTTGATGATGGACTGATCCACTCGCATTATTTCTTC
CACAACCAAAAATACCGAGCTCATTCCAGATCTATCACAGTGCACAGCTT
TTTTCATTGCTTCTATAACAGACTTGAGTAGAAATTTTACTATCCAACAA
ACTCAAACCCAGTCCCTTAGTTTACTTTTTCATGATTCCTGATTGCATCA
CGTCTATCAGTAAAATCAAAAAATGGTGCAAGTGGTTTGTGATACGAGAT
AAGCTGAAATTCTTTAGCGGTACGCTTGACTTTTGAGAAAAGGCCTGGTA
GTGAATTTGCATTTTTCACAAGAGCGCTTTTCACGCTTGTGTTTTCTATA
CCATCATCAAAAGAAATTTTCCTTGTAAATTCAATAGTCTCATGAGTCTC
CTCTACATGAACCGTGCCAATAAGAGTTGATATAGGTGTATTAGCATAAT
TTTGGGAGTGAAATATCTTTCATGGCACTAAAACAAACTAACTTTCAAAT
TCAACAATTGTTATCATAGAGAGAGTGTATTTCCATCCACATTGGACAAG
CTGGTTGTCAAATTGGCAATGCATGTTGGGAATTATACTGCATGGAACAC
AATATCAAACCTGATGGTCTAATGAACGAAGAAGGGTCACAACGAGATGA
TGAATCTTTCAGTACTTTCTTCAATGAAACCGGGAATGGTAAACATGTAC
CACGTGCTCTCTTCCTTGACCTGGAACCTAATGTTATTGGTAAGCAACTT
AATCTAATACTGATTCATCGGTGTGGTTTGTGGTTTGTGTTTTTTTGTGC
CATTCGACAAAGAGTTTTACTTCACTGCCAAGCTCATTTCAGAAATCTCT
CGGAATCTTATCTAACCTCTTGGAATTTTATCGAAGAGTTTGACTTTTAG
AGGCACATCCACATGTGGTCTGAGTTTTGTTTCAAATGTCTTTGAATTGT
ATATCAATCGATCAGTTGCAAAATTTCACGTAGATTTAAAAAATGCAATA
AAAAAGTAAGAACAACTTTCTTTATCAAAACTATGACTCTTTGAAGTACT
ACCTGTATTTTGACCCCTCTTCCTCTAATACGAGTATACTCGTAGTTGGC
ACCGAAAGTGTTAAGTTACGCTCTTTCGCAGGAACTATTGTTAAAACTCA
ATGGGTAAGTACCGATTAAAAATATGGTAAACGTAGAGTAAATCCACCGC
TATGGAATTGAGACAGGTCAGGGGAGTTTTTCTGAGAGCGTTTAGATATG
CTATTTCATTGATATTTTAAGCCCGGGGGGGGGGTACTACCCTTGTCGAC
CGACGGGGGTGCTCCGCTGAGGTTCGAAAAATGGACCCTACGTGGGACTC
GAAATTTGCGAAAAAAGTNTTTGAATATTCAATTAAATAAACAACTGAAA
TAGCTGAAATAGTAACAAATCTCAGAAATATATTTATAACATGGGAATAA
ACCTAATAAAACGAACAATTATGAAAATTATGGAATTACTGTATTCTTGT
TTTTGTCCCCCCCCCACCAGGCAGAGGACTGAATATACCCCCATTTGTAT
TTCTCTCCCCATGAAGCTTGTAATTCTCACTCCCCCCTAGTACCAAAATC
TGATTTCCCCCCATCTTCCTGGGGGGATTATCCCATGTGTATATCAATCG
ATCAGTTGCAAAATTTCACGTAGATTTAAAAAATGCAATAAAAAAGTGAG
AGCAACTTTCTGTATCAAAACTATGACTCTTTGAAGTACTACCTTTATTT
TGACCCCTCTTCCTCTACTACGAGTATACTCGTAGTTGGCACCGAACGTG
TTAAGTTACGCTCTTTCGCAGGAACTATTGTTAAAACTCAATGGGTAAGT
ACCGATTAAAAATATGGTAAACGTAGAGTAAATCCACCGCTAAGGAATTG
AGACAGGTCAGGGGAGTTTTTCTGAGAGGGTTTAGATATGCTATTTCATT
GATATTTTAAGTGAATATTTTCTTCTTCTACTCAACAGATGAAATCCGAA
CAGGAGCATACAGTAAATTGTATCACCCGGAACAGTTGATCAGTGGAAGT
GAAGATGCAGCTAATAATTATGCTCGTGGTCATTACACAGTTGGAAAACA
AATGATCGATGATGTCTTGGATAAAGTCCGAAGGTTAACCGAGAACTGTA
CCGGTCTTCAAGGTTTCTTAATGTTCCATTCCTTTGGTGGAGGTACTGGA
TCTGGTTTCACATCTCTCCTCATGGAACGAATCACAGCCGACTATAGCCG
TAAATCTAAACTGGAGTTTGCAATCTATCCAGCTCCTCGAGTATCTACAG
CTGTCGTTGAGCCATATAATGCTTGCTTAACGACGCATACGACATTGGAT
AATTCAGATTGTGCTTTCATGGTTGATAACGAAGCTATCTATGATATCTG
TAGACGCAATCTTGATATTGATCGTCCATCCTATACTAACTTGAATCGGT
TGATTGGTCAAATTGTCTCCTCGATCACAGCTTCGTTGCGTTTCGATGGC
TCCTTGAATGTTGATCTGAATGAGTTTCAAACCAACTTGGTCCCATACCC
CAGAATTCATTTCCCAGTTGCCACCATAGCTCCAGTTCTGTCAGCTGCGA
AAGCGTACCATGAGAAAATCTCCGTATCGGAAATAACACATCAATGCTTC
GAGCCTGCAAACCAAATGGTGAAGTGTGATCCAAGGCTAGGTAAATACAT
GGCTGTGTGCTTGTTATACCGTGGTGATGTTGTCCCTAAAGATGTTAATA
CGGCAATTGCTCATTTAAAAACGAAAAAGAATATCCAATTCGTTGATTGG
TGTCCAACTGGATTCAAAGTTGGAATCAATTACCAACCACCAACGACAGT
GCCTGGTGGTGATCTCGCTAAAGTTCCTCGGTCTGTCTGCATGTTATCTA
ACACAACTGCTGTTGCTGAGGCCTGGGCTCGATTGGATCATAAGTTCGAT
TTGATGTATGCTAAACGTGCTTTTATACATTGGTATGTCGGTGAAGGGAT
GGAGGAAGGTGAATTTGCTGAAGCCAGGGAGAATATGGCATCTTTGGAGA
GAGATTATGAAGAAGTTGCTTCAGATTCAGTGGCTGATGATTATGATGAA
GATGAGGAGGGAGAAGGAAGCGGTGAAGAATACTGAAGATCGTGTATTTC
TCCCATTGCATTCACAGCTAAGTCTTTAAGATATCTTTAGAATTTTATGA
ATTTTTGATTGAAAGCAAATTTAGAATGTATGATACTTAGAGATTGTTGA
TTTAAAAATAAATTTGAAAATAATTTACACACCCCAACCTAAGCTACTAT
CCCGGATAAAATTGCATTTTTGATAACAACAAGGGAGATATCCGTGGTGG
TTTGTGGGTTCCTCTAAAATTAGGAGAGTTTTATTAAATCTTTCACTTTT
TGAGCGTTTGTCCCGGGGTAATGGAGCCTGTTAAATATCTTCAGGACCAC
TTGGACCAGTGGCACGTGACCGTACCCAATTTTGCCTTTTCTCTGTTTTG
AACTATCACAGCAAATCAAAAAATGTCTGGAATAATTTCATTGAATTTAC
TTCTTGCTAAGGTTAACTGTAATATTTTTTTGCATTTGTGTACATAGATT
ATGGCGATTATCATAAAATTTTATGTTAATTTTAGAAATAGGGAAAATCA
AAATTATCTAAATGCCGAAACACCTCTCTTGGTAAGTTCCTTAAAAGTTC
AAAAATCAATGGTCGTAATGTCTCTACTCTCTACTAAAGTTCTACTTCCA
AGCAATATAAGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000578-exon-sc0000002-1575043694:1075545..1075800 | TCONS_00000578-exon-sc0000002-1575043694:1075545..1075800 | Clytia hemisphaerica | exon |
| TCONS_00000578-exon-sc0000002-1575043694:1074662..1074881 | TCONS_00000578-exon-sc0000002-1575043694:1074662..1074881 | Clytia hemisphaerica | exon |
| TCONS_00000578-exon-sc0000002-1575043694:1071636..1073412 | TCONS_00000578-exon-sc0000002-1575043694:1071636..1073412 | Clytia hemisphaerica | exon |
| TCONS_00000578-exon-sc0000002-1510915933:1075545..1075800 | TCONS_00000578-exon-sc0000002-1510915933:1075545..1075800 | Clytia hemisphaerica | exon |
| TCONS_00000578-exon-sc0000002-1510915933:1074662..1074881 | TCONS_00000578-exon-sc0000002-1510915933:1074662..1074881 | Clytia hemisphaerica | exon |
| TCONS_00000578-exon-sc0000002-1510915933:1071636..1073412 | TCONS_00000578-exon-sc0000002-1510915933:1071636..1073412 | Clytia hemisphaerica | exon |
| TCONS_00000578-exon-sc0000002-1491911889:1075545..1075800 | TCONS_00000578-exon-sc0000002-1491911889:1075545..1075800 | Clytia hemisphaerica | exon |
| TCONS_00000578-exon-sc0000002-1491911889:1074662..1074881 | TCONS_00000578-exon-sc0000002-1491911889:1074662..1074881 | Clytia hemisphaerica | exon |
| TCONS_00000578-exon-sc0000002-1491911889:1071636..1073412 | TCONS_00000578-exon-sc0000002-1491911889:1071636..1073412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1071636..1075800 - |
Blast
BLAST of TCONS_00000578 vs. Swiss-Prot (Human)
Match: TBA1A (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1) HSP 1 Score: 720.694 bits (1859), Expect = 0.000e+0 Identity = 358/440 (81.36%), Postives = 407/440 (92.50%), Query Frame = 2
Query: 254 MRECISIHIGQAGCQIGNACWELYCMEHNIKPDGLM-NEEGSQRDDESFSTFFNETGNGKHVPRALFLDLEPNVIDEIRTGAYSKLYHPEQLISGSEDAANNYARGHYTVGKQMIDDVLDKVRRLTENCTGLQGFLMFHXXXXXXXXXXXXLLMERITADYSRKSKLEFAIYPAPRVSTAVVEPYNACLTTHTTLDNSDCAFMVDNEAIYDICRRNLDIDRPSYTNLNRLIGQIVSSITASLRFDGSLNVDLNEFQTNLVPYPRIHFPVATIAPVLSAAKAYHEKISVSEITHQCFEPANQMVKCDPRLGKYMAVCLLYRGDVVPKDVNTAIAHLKTKKNIQFVDWCPTGFKVGINYQPPTTVPGGDLAKVPRSVCMLSNTTAVAEAWARLDHKFDLMYAKRAFIHWYVXXXXXXXXXXXXXXNMASLERDYEEVASDSV 1570
MRECISIH+GQAG QIGNACWELYC+EH I+PDG M +++ D+SF+TFF+ETG GKHVPRA+F+DLEP VIDE+RTG Y +L+HPEQLI+G EDAANNYARGHYT+GK++ID VLD++R+L + CTGLQGFL+FHSFGGGTGSGFTSLLMER++ DY +KSKLEF+IYPAP+VSTAVVEPYN+ LTTHTTL++SDCAFMVDNEAIYDICRRNLDI+RP+YTNLNRLIGQIVSSITASLRFDG+LNVDL EFQTNLVPYPRIHFP+AT APV+SA KAYHE++SV+EIT+ CFEPANQMVKCDPR GKYMA CLLYRGDVVPKDVN AIA +KTK+ IQFVDWCPTGFKVGINYQPPT VPGGDLAKV R+VCMLSNTTA+AEAWARLDHKFDLMYAKRAF+HWYVGEGMEEGEF+EARE+MA+LE+DYEEV DSV
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
The following BLAST results are available for this feature:
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