TCONS_00000562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000562
Unique NameTCONS_00000562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000562 ID=TCONS_00000562|Name=TCONS_00000562|organism=Clytia hemisphaerica|type=transcript|length=1537bp
TTGGAATGAAGCtttatcgaaatcccaatgggataAAAAGACAGTTTCCA
ATTTTCACTGCTTGATTTTGAATGGGAATAAAATCGTCGGGTGATATCGC
AGAGAGGTtaaaattggtattttttttAACGGGGACGAGTttctggccaa
tttttccagttggCCGTGGgaccaccgggtctgtgacacgacGTTGTTTC
GTATCATCCTTCTTTATTTATCTTACTCTATTCGTTTTCTCTTTTCAGCT
CAGTGGATTAGCACTCATTATAATAGGGTCGTATATGAAAACACGATATG
GTGATTATCTATCTTACGGTGACGGTTACAAATTTCTATCAGTATCAGTC
TTCGTTATTGTTCTTGGTGTAATTATTTTCATTCTTGGATTTTTGGGTTG
CTGTGGAGCTATCAAAGAAAATTACTGTATGATCACAACATTCGCAATTC
TCATGAGTATCATTTTGATTCTTCAAATTGCAGCTGGTGTTCTTGGATTT
GTTTACAAAGGAAAGGCAAAATAACTTCAGTATGGGtaaacccccttctc
acagacctggcatgagttttttagccagtgggggtaaaaataacggacaa
gAACTTGATGGGGGATTGCTATTGCCATATTTCTATCTATTGTTTTTCAG
CGGGGATgggaaaaaaaagatatttttgcagtgaggattattttcagtgg
ggacggaatttggagtataattttccactggggaggatatttaggccaat
ttttcaagtggggctgtgagaagggggtatacGGATTGTGGAAATACTCT
CATACCTCTACAAATACAGCTACATGCTAGGGCCCTAGANAGGGGTATAT
GGATTGTGGAAATACTCTCATACCTCTCAAAAAACAGCTACATACTAGGG
CCCTAGAACAATTAATTACCCAACAGCTGTCTGAAGGCAATCGTTTAGGC
TTCTGCTATCCTCTGGAGGAAGATATCAATCTAGTTATTTTCTGCCCTGC
ATATTAGAGGTTAATTACAGGTATCAAGCGGTGACACAAATAGCActgtc
ttcattttttttgggaattttaatGTAAGAAATGGCATATATTCGTTCCT
AAGATCTTTGTACTACTATAAGTTTactaaaaattaattttcaacaCGAC
AGGTCGAAACAATCGTTGAAAATACATTAAACGGTGCtgtgcaaaaatat
tttgacgatAGCCAACCAGGTGCTAAAACACTCTTAGATTGGGctcaaca
aaaatttgaatGCTGTGGAATCAAAGGGCCTGGTGACTACAGACAACCCT
CCACAACATCATCTTATTACTGTGCCAAGTCTGGTGGTGTGGCTTCTTGT
TACTCTGATAACAAATGTGGTTCTGGCGTCCAATATGGTGAAGGTTGCGA
GCAAAGTGTAATTGATATTGCCAAGAATAACATGTTACTGTGTGGTGCTT
TTGCAATAGCATTNGAGTGTAATTGATATTGCCAAGAACAACATGTTACT
GTGTGGTGCTTTTGCAATAGCATTCGCTCTAATACAA
Run BLAST on NCBI

transcript from alignment at sc0000002:699860..701396-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000562 ID=TCONS_00000562|Name=TCONS_00000562|organism=Clytia hemisphaerica|type=transcript|length=1537bp|location=Sequence derived from alignment at sc0000002:699860..701396- (Clytia hemisphaerica)
TTGGAATGAAGCTTTATCGAAATCCCAATGGGATAAAAAGACAGTTTCCA ATTTTCACTGCTTGATTTTGAATGGGAATAAAATCGTCGGGTGATATCGC AGAGAGGTTAAAATTGGTATTTTTTTTAACGGGGACGAGTTTCTGGCCAA TTTTTCCAGTTGGCCGTGGGACCACCGGGTCTGTGACACGACGTTGTTTC GTATCATCCTTCTTTATTTATCTTACTCTATTCGTTTTCTCTTTTCAGCT CAGTGGATTAGCACTCATTATAATAGGGTCGTATATGAAAACACGATATG GTGATTATCTATCTTACGGTGACGGTTACAAATTTCTATCAGTATCAGTC TTCGTTATTGTTCTTGGTGTAATTATTTTCATTCTTGGATTTTTGGGTTG CTGTGGAGCTATCAAAGAAAATTACTGTATGATCACAACATTCGCAATTC TCATGAGTATCATTTTGATTCTTCAAATTGCAGCTGGTGTTCTTGGATTT GTTTACAAAGGAAAGGCAAAATAACTTCAGTATGGGTAAACCCCCTTCTC ACAGACCTGGCATGAGTTTTTTAGCCAGTGGGGGTAAAAATAACGGACAA GAACTTGATGGGGGATTGCTATTGCCATATTTCTATCTATTGTTTTTCAG CGGGGATGGGAAAAAAAAGATATTTTTGCAGTGAGGATTATTTTCAGTGG GGACGGAATTTGGAGTATAATTTTCCACTGGGGAGGATATTTAGGCCAAT TTTTCAAGTGGGGCTGTGAGAAGGGGGTATACGGATTGTGGAAATACTCT CATACCTCTACAAATACAGCTACATGCTAGGGCCCTAGANAGGGGTATAT GGATTGTGGAAATACTCTCATACCTCTCAAAAAACAGCTACATACTAGGG CCCTAGAACAATTAATTACCCAACAGCTGTCTGAAGGCAATCGTTTAGGC TTCTGCTATCCTCTGGAGGAAGATATCAATCTAGTTATTTTCTGCCCTGC ATATTAGAGGTTAATTACAGGTATCAAGCGGTGACACAAATAGCACTGTC TTCATTTTTTTTGGGAATTTTAATGTAAGAAATGGCATATATTCGTTCCT AAGATCTTTGTACTACTATAAGTTTACTAAAAATTAATTTTCAACACGAC AGGTCGAAACAATCGTTGAAAATACATTAAACGGTGCTGTGCAAAAATAT TTTGACGATAGCCAACCAGGTGCTAAAACACTCTTAGATTGGGCTCAACA AAAATTTGAATGCTGTGGAATCAAAGGGCCTGGTGACTACAGACAACCCT CCACAACATCATCTTATTACTGTGCCAAGTCTGGTGGTGTGGCTTCTTGT TACTCTGATAACAAATGTGGTTCTGGCGTCCAATATGGTGAAGGTTGCGA GCAAAGTGTAATTGATATTGCCAAGAATAACATGTTACTGTGTGGTGCTT TTGCAATAGCATTNGAGTGTAATTGATATTGCCAAGAACAACATGTTACT GTGTGGTGCTTTTGCAATAGCATTCGCTCTAATACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000333XLOC_000333Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000562-exon-sc0000002-1575043694:699860..701396TCONS_00000562-exon-sc0000002-1575043694:699860..701396Clytia hemisphaericaexon
TCONS_00000562-exon-sc0000002-1510915933:699860..701396TCONS_00000562-exon-sc0000002-1510915933:699860..701396Clytia hemisphaericaexon
TCONS_00000562-exon-sc0000002-1491911889:699860..701396TCONS_00000562-exon-sc0000002-1491911889:699860..701396Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:699860..701396 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.153635 0.0880127 0.108598 0.274112 0.254307 1.99544 2.20113 2.50832 3.9979 5.24107 1.01829 3.79815 3.08009 1.45653 2.50217 0.542838 0.542534 1.50597 1.66079 0.432543 0.402889 0.595151 0.177404 2.84894 6.55481 1.40684 1.04587 2.7789 3.89031
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top