TCONS_00000552 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00000552
Unique Name	TCONS_00000552
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1838

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000002:470542..486353-

transcript sequence

>TCONS_00000552 ID=TCONS_00000552|Name=TCONS_00000552|organism=Clytia hemisphaerica|type=transcript|length=1838bp
tctcagttcaaaattattaaaaattatgtgaaaataatataaaagaaaat
aatgtaaacaaagatgccgaaaaaggccaaaaaagctaaaggaaaatcta
aaaaagacaaaaaaggAAGGAAGTCATCAAAAGGAGTCAAAGTCAATAAT
GACGACGTTTTGAAACAAGCTATAGCCAATGCTTGCTTATGGGAAAGTCG
TCTTGGAACTGTCGAAGTTGCCAAAAATGAGTATAGGGACACGACACGAA
CGTTGCTTCATGAAAATGAGAAACTTCAAACACAAGTATCACAGACAGAG
AAGGAGACTGTTGACGTCCTTAGTTTCCTGAGGGATGAAGATATCAAGAA
AAATAATACGATCAACAAACTACAACTAATGATCAAAGACTTGAAAAAAG
attacaagaaagaaaaacaaggaTTTATAGATGACTACACCAAACAGATC
GAAACACTTCAGACAAGTCTAACGGACAAAACAAATGAAGTGAAACTGAT
GCAATCGGAGTTGAAATTGGTGAAAGAATTTCGTCGGAAAAGAGCTCTCA
TGCAGAAAGAGATTGATGATATCAAAGACAATCTTTTCATGAACGAAAAA
CAACATGAAAATGCTCTGGAAAAAATCGAAAGAAAGTTCTTCGATGAAAA
GATTCGTATGCAGCAAGAAGCCAATCGAAAGATTTCCGAACTTGCTGAAA
GAGCTCATAACGAAGCTATCAGCAATTTGGACGATACAACGAAATCAGTT
TATAAAGAGAACGTTCGATTAAACGAAGCATTGACTTATCATATAAAAGC
TGGTGAAGAACTATCACAGcacaaagaaaatttggaaGAGCAGAACAAGA
AATTAAGCAGTGAAAAAGAAATGAACAGCCTCATCGTCGAAGAGAAAGTC
ATCGAAagcaagaaaattaaaaaagctaACAGCTCGCTTCAACAAAAAGT
TGATGACCTTGAGAAAGCATTGACAGAAGTGATGTCGGAgaataatcaaa
agaaaacatcCTTAGTTCAGAAACATAATCAAGAACAAGAGGGAAATAAA
ATGGAAATAGCACGGCTACAACGTATCATTGAACTAAAGAATAAAGAGAT
GAGCCGTGTCAAGAAACTTGCCAAAAACATCCTCGATCAGCGTTCAGATG
TCGAAAAATTCTTTATCGAATCATTGGAAATGGTCAAAACTGAAATCATC
AGAAATCGtgcgCAATATCGACGAGACGCTGAAGTAGCATACAATAAAAG
AATGACCGAAGCACATTCTGGTCACTCTGATTATCCCAAAGTCCGCACAT
TTCGTCATCTAAAGAACAGCACTAATTCCGTGTACGCAGATCTACGCGCG
GCCGAACGGTGGGATGGGTTTGACGCGTCGGTTGATCTTTCAGAATTAAC
ATGGGAACAGAGAGAACAGGTTCTTCGCTTGTTGTTCGCTAAGATGAATG
GCCAGAAAACATCAAAAGTCAGCAAAAGTATACTTCCACCCATCAACAGT
AAGATGGACGAAACTAAAGCTCATCAACCGAAACCACCTTCCGTTCAAAA
AGCTTTTCTCACGGAAGCCGATGATCCAAAAGAGGGTGTCAGTAGTGATG
CAAGTAGGGTATTTTCAGCCACTGAGATCCTTGCTTTTACATGACTTTTA
TGACTTAGCAATTTTTAGGGTACTGATTatttgtaattaattttttttga
aaagttgtatATAATAGTTTGTGTATAGATTTAATCAGAATAGAAtgtga
ttttattttattaccttgtaaaataattaattttttaatgatggtttaat
ttattttttggtaaagaCTGATTCAAGGAAAAGTAATT

Run BLAST on NCBI

transcript from alignment at sc0000002:470542..486353-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00000552 ID=TCONS_00000552|Name=TCONS_00000552|organism=Clytia hemisphaerica|type=transcript|length=15812bp|location=Sequence derived from alignment at sc0000002:470542..486353- (Clytia hemisphaerica)
TCTCAGTTCAAAATTATTAAAAATTATGTGAAAATAATATAAAAGAAAAT
AATGTAAACAAAGATGCCGAAAAAGGCCAAAAAAGCTAAAGGAAAATCTA
AAAAAGACAAAAAAGGGTAAGAACTTTCTTTCATTTTTACTTCAAAAAGA
CTTATTTTTACTGAAAAAAAGCCTCTTCGACAAGGCTATAAGCAGAGGAA
ACAAAAAATGCTATAACTTCTTATAGAAATAGAACCAAATGTTTTTGTAC
TTGTTGAAAAGATATTCAGGAGTGGAACATTATTATAAAGAAAAAACTTT
TCTTTAAAAAATTTTTTTTCGCAAAAAGACTTTTTCACAGTGATAACACT
TTAAGATTGAAGATATTTTTATTTAAAAATGGTGACCATAGCACAATTAA
TTCTACAAGGGCTGGATTTTTCTCTTCTTTACTTTTCTTTATTTTTTTAA
TCTTAGAAGGAAGTCATCAAAAGGAGTCAAAGTCAATAATGACGACGTTT
TGAAACAAGCTATAGCCAATGCTTGCTTATGGGAAAGTCGTCTTGGAACT
GTCGAAGTTGCCAAAAATGAGTATAGGTAATGATTATTTTTCTAACAGAT
CATTCATTCTACCAGCACTTTGCTTTGCACTAAAGGTACAGCTCTCTTTT
AGTAATACTCATCCAATATCGATATTTACTTGGATAGTTCAGTAGTCTGC
TAATTTTAGACAGTCTTTTGATTATTTTCACCGGTCCAGGGCCAGTCGGC
TATCTATGAACTGAACAGAACATTGAAAGGAGCGGGGATTCGACTTTGGA
ATTTGTTTAATATTTTTATTCTTTATTTAAAGTTGGGGACGCTAATAGAA
ATACACAAGTATAATAGGAATTCTGATCAAATCCAACCAATTTCTAAGAT
AAAAAGAATTGTTAAACCTCTCAACCAATCTTAATAGGGACACGACACGA
ACGTTGCTTCATGAAAATGAGAAACTTCAAACACAAGTATCACAGACAGA
GAAGGAGACTGTTGACGTCCTTAGTTTCCTGAGGGATGAAGATATCAAGA
AAAATAATACGGTATTCATCAGTTTAATCATAACCATCATGGACCTAGAG
TTTTTTCATGGCACGATGAGTGTCCTCTCATTTGGGAGGGGCGGTTACAA
AGTTAGGGTACTTGACTAGTGCCATAAATGTGTACTAACCACTGACCTTT
ATATATCCCTGGAACAAGCTATATCCACCATCTTTGATCAGAGTTTTTTT
GGAATTGGTACCCGAGAAGAATCCATTGCAATGTTAAAAATTAACATATA
TAAAGGCCCTACATCATCAAAAGTATTCGAGATAAAGTAGATCTAGCGCT
CTCGATGCATTTTCACCATTTCGCCATTAGGGTACCAATTTCAAAAAATC
TCCGATCAAAGATTTTTGGTTGGCCGGAATTGAGTAACTTGGTCAAGGGT
ATATAAAGGTGAGTGGTACTAACATGGTTTTGGGAATGGAGTTTTGACCA
TCATCCGTTTGTACCTTAATATAAAAAGTTGAAAATATGCCTTCAATGTA
GGTAGACCACCCCTAACTAACTGGAATTACCTGTTAAAATCCTTATTTTG
ACGGGAAAGCAAGAGTAGAATTATACAGCCTAGTACCCAAAAATGTCCTA
AGTTTTTACTTCCCTTAAAAATAAAAAATAAACACTTTTTCTTAGGCACT
TTTCGATACTGAGGTATTATAATCGACTTTTTTTCTCCAAATTTGCACAA
GGTAAAGTTGAAAATCAGCTTTTAAATGAATTTCCAGCTTTGACCACTCC
ACTTAGTACATGGTACTAAGTTGTTTTTGACTTGCCAATTTTGACCATCA
ACCCCGGTAGTGGTCCCTACAATCTAGTACTGAGCCCCTGTTCAATAGAT
TTGATTTAGACCTCGACTTGGGGTTCCATCGATATCAAGGACAATCCTCT
CCAGGTCGACGAATAAGAAATCCATTGTACTCTATAACTTTTTTGAATTC
TTTACAGTATTCTATACATTGTCGCTTTCCTATTACAGTATCTGTAATAT
GCGAGAAATCGGTCTTGTTTTTTTCATTGCCTTTTCCTTGGTTCCATACG
TAAATATAACCGACATCTCTTCAGAAGTATGCAGTATGTTTTTTAATAGG
GATAATAATATATTTTCGTAATACTTTTCAAAAGGGTGGAAAATTTCTTG
CTCTACTGAAGAAATTTGAAATTCGATTGTCTTATTCGATCATTATTTTT
TTTGTTGGTCGTTCTGTTCAATTTAGTTCTTATTGATCCGATCGTCTATT
CCGTTCGACTGAGATTACCTACCGAGCAATTTTAATACATATGTATCTCA
TATGACATGGAGTTTTTGGCGGGAATTCGTTTGGTTTATTTTAGAGGCAG
CCTAAAAATGCCTTGCGCCGAGAGCAAGTAAATCTTGCTTGTAAATTCGT
TCCCATTCCTCTAAAAAAGGCGACCGCGCTGATGCAAAGGGTTGATTGAT
ACATTCGAACCTACACCATTCGGAGCTCAAGATTAATTGAAAGTCAACTG
TTGTTATACACGCTTTTTTTATTATAAGAACAAACTATATAAGAACATAA
GGCTTCGATGGCCAAAATGTGAAGAACAAGTTAAGAACATTTGAAGGCTT
TGCAGGGCTTTGCGGACTCGAAAACACCCTATTTCTTAGGAAAGTGGGTA
AGAATGGTCACAAAATGGTGAAAGTAAGCACATGTTAAGAACATTTTTAG
GCTTAAAACTGAAAAAGTTAAGAACATCCAAAGGTTTCAAAATTTTTGGA
TGTTCTTATAAAAAAAGGTATCTTTTATTATCCATAGATCAACAAACTAC
AACTAATGATCAAAGACTTGAAAAAAGATTACAAGAAAGAAAAACAAGGA
TTTATAGATGACTACACCAAACAGATCGAAACACTTCAGACAAGTCTAAC
GGACAAAACAAATGAAGTGAAACTGATGCAATCGGAGTTGAAATTGGTGA
AAGAATTTCGTCGGAAAAGAGCTCTCATGCAGAAAGAGATTGATGATGTA
TGAAATGTTTTTCTTCTTCGTTTTTTTATGGATTTTCTTTTAATAGACCT
TTTTGTAAATTACGTCACGAACATCACTTGCCTCGTATTCAAACAATTAC
CATGGTGATTGTGTCCCTTGAGACATTAAATGAATATTTTTTGATGAATA
GGAAGTAGTGGACTCCGCTGGGAGTTAATCACCATGGCAATAATTTCAAA
ACGAGGTAAGTGATGTTCGTGACGTAATTTATGAAAAGGTCTATTCGTTT
GGATATTATCATAATAATATAGAAAGGAGGCGCGTCTCTTATGCCGACAA
AGCAGAATCAACAAAATAGTTTCTCGTTACTCAAAATGTGTGCTCGTGCG
GTGGGAGGGGGGAATCTTTTTTTCTTTTTTTGTTTAAAACTGCTGAAAAC
GCAAATGGTAGGAGATCCGTTAAAAATATCCTTTAATATGCTTAAAATTT
CAAATTTTGATACAAATATTATGGAATTATGGTTAGCCACAGTCAAACTT
TTGATGTAAAGTCTCATTTCTTCTATTAGTAAGATCAGTGCATGGCCGCA
ATTCATAACATCTCGAATTAGAAATTCGTTGCAATTTCTAATTTGACGAC
CTTTACGGTATTTCTTTTTGCAGTTTGCGATTATTTCCAATCTCTTTTGA
TACTCGTTTTCTTTTTAGATCAAAGACAATCTTTTCATGAACGAAAAACA
ACATGAACATGCTCTGGAAAAAATCGAAAGAAAGTTCTTCGATGAAAAGG
TATGATTTTCACATTTTCATTTCCAATCTTGTTTAAGTTAAGAATGATAG
GGAAATTTCGTCGTTTGATCTAAAAATTATGCTTATTTATATCGATTATT
TCCTGCTTAACGCGAGTTTTTGATGTGATAACATCATTGTATTATAAACT
TTTTAGATTCGTATGCAGCAAGAAGCCAATCGAAAGATTTCCGAACTTGC
TGAAAGAGCTCATAACGAAGCTATCAGGTATATTAATGAAAAGGCATCTG
TTTCACGATTACCTCAAGGGGATTAATTTCCGCAAGGATTATATTTTGCG
AGTTTCGCGAGTTTTTTCAAAAACTTGCGAAATTTAATCCTCGCGAAAAT
TCATCNAAATTTTTGGATGTTCTTATAAAAAAAGGTATCTTTTATTATCC
ATAGATCAACAAACTACAACTAATGATCAAAGACTTGAAAAAAGATTACA
AGAAAGAAAAACAAGGATTTATAGATGACTACACCAAACAGATCGAAACA
CTTCAGACAAGTCTAACGGACAAAACAAATGAAGTGAAACTGATGCAATC
GGAGTTGAAATTGGTGAAAGAATTTCGTCGGAAAAGAGCTCTCATGCAGA
AAGAGATTGATGATGTATGAAATGTTTTTCTTCTTCGTTTTTTTATGGAT
TTTCTTTTAATAGACCTTTTTGTAAATTACGTCACGAACATCACTTGCCT
CGTATTCAAACAATTACCATGGTGATTGTGTCCCTTGAGACATTAAATGA
ATATTTTTTGATGAATAGGAAGTAGTGGACTCCGCTGGGAGTTAATCACC
ATGGCAATAATTTCAAAACGAGGTAAGTGATGTTCGTGACGTAATTTATG
AAAAGGTCTATTCGTTTGGATATTATCATAATAATATAGAAAGGAGGCGC
GTCTCTTATGCCGACAAAGCAGAATCAACAAAATAGTTTCTCGTTACTCA
AAATGTGTGCTCGTGCGGTGGGAGGGGGGAATCTTTTTTTCTTTTTTTGT
TTAAAACTGCTGAAAACGCAAATGGTAGGAGATCCGTTAAAAATATCCTT
TAATATGCTTAAAATTTCAAATTTTGATACAAATATTATGGAATTATGGT
TAGCCACAGTCAAACTTTTGATGTAAAGTCTCATTTCTTCTATTAGTAAG
ATCAGTGCATGGCCGCAATTCATAACATCTCGAATTAGAAATTCGTTGCA
ATTTCTAATTTGACGACCTTTACGGTATTTCTTTTTGCAGTTTGCCATTA
TTTCCAATCTCTTTTGATACTCGTTTTCTTTTTAGATCAAAGACAATCTT
TTCATGAACGAAAAACAACATGAAAATGCTCTGGAAAAAATCGAAAGAAA
GTTCTTCGATGAAAAGGTATAAATTTTCACATTTTTCCCAATCTTGTTAA
GTTAGAATGATAGGGAAATTTCGTCGTTTGATCTAAAAATTATATCGATT
ATTTCCCGCCTAACGCGAGTTTAATTGTGATAACATCATTATGTATTATA
AACTTTTTAGATTCGTATGCAGCAAGAAGCCAATCGAAAGATTTCCGAAC
TTGCTGAAAGAGCTCATAACGAAGCTATCAGGTATATTAATGAAAAGGCA
TCTGTTTCACGATTACCTCAAGGGGATTAATTTCCGCAAGGATTATATTT
TGCGAGTTTCGCGAGTTTTTTCAAAAACTTGCGAAATTTAATCCTCGCGA
AAATTCATCTTGCACAGTTTGTCCATGTTTGTCTCTTGAAATCTCAAAAA
CCCTTAGGAAATTGAAAGAAAATAGTCAAAGAAGGTAATTATCTCGCGAA
AATAAGTCCCGCCAAGATTAAATATTTTCGCGAAAATGTCTTCCCGTGAA
AATTAATCCCCTAAGGTATTCAGTCCACTTGCCAAAACGCATAGCAGAGT
TGTTCTCTTTGACTTCTGTTTGATTTCTGTTGATTATGTATGTTTACTAA
CTGATTTTTTATCTCTTTATTCTTTTTTGACGTTTTGAGAATTCTAGAGA
TGGTGAAGAAGATTATCTTTTTCAATGGTTATTATCAGATTTACAAAATA
TTTTGGATTTGGGAAAAATGAAGATAGGGCAAATATACGCGAAGAGCATG
GCTCTGTGACTTCCAATCTCGCACAAGGTTTCTTATGGCAAAGATATAAC
GGCCTTATCCGTTACATTGCAATACGAAGCGCAAAATTCCTCATAATTAT
GTGATTTTTAAATCGTTGGTTGAAATAACACATGCAAGACCATTTTCCAT
TCCATTATACAGTTGGGTGTCTTTAGCTCGAACCTTCATAGCTCGAATGT
CTTCTTGACACGAACAAGTTTTATGGTTTCAGTTAACAATGTCTTATAAA
CCTTACTCCAAAACTCGAACAATATTGTGTTCCCCGTGCGTGTTCAAGTT
ATAGAGACTCCACTACTGTACATGTTTTTTTATAAGCATATTTTTTTTGA
AAAACAAGTTATGCTTATGCTACATTTTGAAATCAAGCTCAAATTATGCT
TGTGATATGCTTATTTTTCCGAAAAAATTGGTTCTTTAAAAATGGAAAAG
AAATGACCAAAGGCCAAAGCTCACTGATATGCTAATGATATGCTTATCTT
TTCACCAGCCCAGGTCTTAGTATGCTTATAAACGTTATGCTTTTAAAAAA
ACATATATTTCAGCATTCTACAGAATAGCGCTCCGCAACGCATACGTCAT
AATTATTACTTTTCACTTCTTTTTGACATTTGTACGAAATGCAATCCCAC
AATTCAATGCGGCTCAATTAAAGATACGTGCAAGTTGTTGTATACAGCTT
TTGTGAAATGATGCAATTAACGTGAATAGAGATTTTTAACTCAAAGGTTG
ACAGGATTGGAACTCGTACAAACACATCGAAAGTAATGATTAAGTCAAAA
ATGAAATCTATTTTAGATTCAGTGCAGTGCGCTATTAACTTCTCCAATTT
TAACTCGTTCTCTTTCCCATATTACGCAGCAATTTGGACGATACAACGAA
ATCAGTTTATAAAGAGAACGTTCGATTAAACGAAGCATTGACTTATCATA
TAAAAGCTGGTGAAGAACTATCACAGGTTTGTGTTGACTACNCCCCTGTT
ACGCAGCAATTTGGACGATACAACGAAATCAGTTTATAAAGAGAACGTTC
GATTAAACGAAGCATTGACTTATCATATCAAAGCTGGTGAAGAATTATCA
CAGGTTTGTGTTGACTACATTATACTTAAAATCTATCACTTAGCAAAAAC
CTTCAAGTTTAAAAATCTTGAAAGATACTCCCACAAAACTGATGCATTTA
AGCTACCATCACAGCGTTACTGCAAATTATACTTAAAATCTATCACTTAG
CAAAAACCTTCAAGTTTAAAAATCTTGAAAGATACACCCACAAAACTGAT
GCATTTAAGCTACCATCACAGCGTTACTGCAAATTGTTCAAATATTTTTT
TTTATTTGACATTATGTTAACCACCCTGGACTTTTCTTCCTCAACATATG
GTAACCACCCTGGATTTTTACACTCAAGAAACCGGACCACCCTGGATTTT
TTATCTTCCATATCACCCTGGACGTCACACCTCCCCCAACATAGGGGGTA
CACACTATTTCTGGAATAGCCAAATGCGTGTATACACCAAAGAAGAGTTG
AACCAGGGCTTTCTCAAAAATATTCACCCTCCCCTCGTTGAGGTCATGTC
AAGGACTTGAAAAATGGTTCTTAATGCCTCTCTGCTGACTGTTCTGAAAT
AAAAAAACCTATATCCAAGGGAAAAGAATGGCGTACTCTCTACATGTTTT
TTTTATAAGCAAGTGTCTGCCCCTTGATCAGGCTCGTGTATGCATAAATT
CTCAAAGCATCCAGGCATAGCTTTTGCTAATTATATGCTTATGAATCATG
CTTATCATTCACCCCGAGCCAACTTTTTAGTAAATTTTCAGAAACTTTGT
AAACATTTGTTCAGATTTTGGGAGCAGTGGAATGTAGCTAGCCGTGGAAT
GTCTTTATTTTTACTTGACCTCTACCAAACCTTTTTAAACATATAAGAAA
TGACAACTTGAAAAATATTCCAGGCTGACATATATGCTTATGTTCTGCTT
ACAAATTCTGCAAATACGAGTCTTAATATGCTTATAATCGTTATGCTTAT
GAAAAAATGTACCTTCGGGTAGACATCTATCTACCTATATGAAAAAGGAG
TCTTTGGTCGCCCCCCCCTTACGTGTTGCAAACCTACTTCAACTATAGAG
ATTTCTTCTTTTCAGCACAAAGAAAATTTGGAAGAGCAGAACAAGAAATT
AAGCAGTGAAAAAGAAATGAACAGCCTCATCGTCGAAGAGAAAGTCATCG
AAAGCAAGAAAATTAAAAAAGCTAACAGCTCGGTAAGAATGCTGTAGAAA
TTCGAAATTTGTCATTCTCAGTGACCGTCCTTTTTGTTTTGTTTATTCGG
CAATCCCCTAAAATCAATAACGCGTTTTGAATTAAATTTTTTTGATTTTT
GAAGAAAATAATTAAAACTAAAACATAACAAAAAAGGACGCTTAGCTCTC
GCTCTTATTTAACCTGTTATTTGCCATATCTTAGTTAAAAGACCATTTCA
AGACCGATCCAATTTTCAAAATCTGGAAACTTATATTACCGGGAATATGA
TTTATTTTTGACGTATCTTTAATGTCATTTACTTTACAATTTTTCCTTTA
ATTTCATTTATAGTAAAACAAATTCAAAAAAAAATTACGATTTTGAATAA
TCTTGACATATTAACAGGCCTTTAAATGGCCAAAAATGCCAAAGAAACTT
TTCTAATTTTTGCCTGTAGTGCGAATCAGGACCCCCAGAAGGGTTCGGCC
AATTTTGGACTTCGTCTATTTATTATTTGTATCCCATTTATAGCTTCAAC
AAAAAGTTGATGACCTTGAGAAAGCATTGACAGAAGTGATGTCGGAGAAT
AATCAAAAGAAAACATCCTTAGTTCAGAAACATAATCAAGAACAAGAGGG
AAATAAGTAAGTTGGAATTCTACATGGTACTATGTTACAGGGGTCATGTT
ACAGACTGTGGTGCAGTGGTAGAGCATCCGGCTACGGTTCGCAAGGTTGT
GGGTTCAATCCCTAGCTTGGTCATACCAAAGATTCCAAAATGGTACTTGA
TGCCTCTCTGCTTGATGCTCAGTAATTAAGATAAGGATCAAGGATGAGTG
GAGCGAGCCAGGGAAAAAGAGTGGCGCCCTCCCCTACCTTCGGGTAAATA
GCTATCGAAAGAGGAGCTATCGGGTCGCCTCTGACAGCAGTCACAGACTT
ACTTAAATTCTCGCATCGCTGAGATTTTTTAGATACACAATGCTTCTCGT
GCTTGTTCTGATTTTTTGCACAATTAAGTAAAATAGTAATTCCCAAAATA
TGATAGAGGCCAATTTTCGATTAAAAATCTTTCCGGCCGCCAGAACCTGA
AAAAGCGGTTTTTCTGGATTTTCTCGAGATTTTATCTTTTTTTTTTCCTG
ACTTGTTTATTTTGAATTTAATTTTTTTTGTTGAACAGACGGGTAGGTCC
ATTAAAGTATCACTTTTTTCATTAATTTTTATTAATTAACTTTTACAGAA
TGGAAATAGCACGGCTACAACGTATCATTGAACTAAAGAATAAGGAGATG
AGCCGTGTCAAGAAACTTGCCAAAAACATCCTCGATCAGGTAAGACAATT
AACTTATCATTTTCTTATTTGTATGGCTCTTAAAATCAGAGCTTGGCATG
GGTTTACGGCAACACTGTTTTACCGACGAGTTCTTCGACAGGTTTTGAAG
GATCCTGTAAAGCCTCAACTCGTCGTAGTCATAGATTTATAAAGCCCGAA
GGGCTAGATGTCGTGCTTTGGCTGAAATGTGTTCAATATGCTGATGACAC
GACTATATATCGCCACACCAAACCAAACGAGCTTGAAAATTGTGTCACTG
AAATGAACTCTGATATTAGAGTAATTGAGAAATGGTCGCTGGATTCGAAC
TTGATATTTAACGCCAGAAAAACTAAATCGATGCTCTTTGCCACATCTCA
AATGGCAAGGAGGCATGATTTTGAATTCGAAATCAAGTCAAATAACGAAA
ATGTGATTGAGCGTGTTCCCCTATTCAAGCTGTTGGGAATCATCTTCACC
GAAAACCTAACATGGAATGAACATGTCAAAAAAATCGTCACTAAAGCATA
TGGTACGCTGAAGAGTCTATCACTCATCAAACGATATTTACCATACCGTG
TACGACGCCAATTGGCAGAATCTCTTGTATTGAGTAAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTGACTTTATTATATTTCTAGTTCTATGAAGTTT
TTTTTCTTTTCTATTTGATGTTTAATTAGTTTCAATTAATTTAATTTAGA
TAGTTGATAGCTCACTGGTCGTGTTTTGCAAGGTCCAGTACACTTTTACA
CAGCCTTCGGTTTGCAATCTATGCTAGTTTTGCTCATAATATCTTACGCT
CTGTCGTGATTCTATCTCACCGAGTTCTTAGATCTATTTTGTCGCTTACT
TTATCTCTAGCCATCAATAGTACTTGAGCCTTAGTCTAGTCTAGCTTATA
ACATTATGTTAGTATTTTTTTTTTAAATATATTCGTTAATTTTTTATAAT
AGCACACATTGCGATGGCCTCAGCTAGCATACTCAGATACTCGGATTTGT
TTAGGTTTTAGTCTAGCTCTATCACTATTCACATTTTACCCCTCAATCCT
AATCTTTTATTCATCATACTAGCCCACCGCTTCGTCCCTATCTGTTTGTC
TATACNTTACAGAATGGAAATAGCACGGCTACAACGTATCATTGAACTAA
AGAATAAAGAGATGAGCCGTGTCAAGAAACTTGCCAAAAACATCCTCGAT
CAGGTAAGACAATTAACTTATCATTTTCTTCTTTGTATGGCTCTTAAACT
CAGAGCTTGGCATGGGTTTACGACAACACTGTTTTACCGACGAGTTCTTC
GACAGGTTTTGAAGGATCCTGTAAAGCCTCAACTCGTCGTAGTCATAGAT
TTATAAAGCCCGAAGGGCTAGATGTCGTGCTTTGGCTGAAATGTGTGCCG
AGGTTAGGTAGGATTCCTAACTGAAGTCTGTCTCAAAATAATTTGCAGCT
GGAGACAAAAATGGCTGTAACTTTAGATAGAATACGAATCAAGTTGTGAG
TGGAATATTATCAAGTAAAAAATTTGAGAAAAAAAAGGAAAATGAAAATG
AAAAATGAAGAAGAAAAAAAATCAACTTCTTGTAGAAATGTGGTATAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCAATCAAAAGATATCAAACAAAGTTTATTGCTGGTTGATCGACA
AAAGGCTGTTTTTTGTCGTTTTTTACTACTTTATAGAGTCAACCAGCAAT
AAACTTTATTTGATATCTTTTGATTGAATGAATATTTTTTTGAACCATTT
ACTTGATAATATTCCACTCACGAATATCTTTTTAACGAGCACAAAATCGC
TACTTGATTCGAATTCTATGAAAAGTTACAGCCATTTTTGTCTCCAGCTG
CAAATTATTTTGAGACAGACTGTAGGTCACGTGACATTACAATAGAATTT
CAGCGCTTGACCAATCTTTGCAGGTTTTCGAAAACAATAGCAGCAATATT
CTTTGCCATATTCACTTTTTTTTTGCTTAAAGCACGACATCTAGCCCTTT
GGGCTTTACTGAAATCTGTAGTCGTTGTCTTGCTTTTCAATCAATCTTTT
CATTGAGTATTATTAAAAGTCCACTCCTTCTTCACTATTGCGTTGATGAT
GTATTCGCATACAATAATAATCTCAATAATGCACGATAAAAAGCTGACAT
TTTTCAATATATTAAGTTCTCTCTCTTTTTCTCTATATTAAGTTCAAAAG
TGACAATGACCGGGGGGTAAATTTCCAAGAAATGTTATATCCTCCACCTC
CACCCCCCCCCCATATTCAAATTTTTTTCTGTATAAGCCCATTGCTGCTC
ATTACCGTGAAGACACCTAAAACGTCGCTTTTCTTGTGATACGTTTTTTT
AAGAAACTAAGAAACCAAGCAGCCTCTCAATGTTTCTTAAGAAATCGGCT
TTTTGAGCCTTAAATGTTTCTTACATGTTTCTAAACTTTTTGACATAATC
AGCCTCGTGTTTCTTAAATTTTGCTTCTTTCAAAAAAAAAACCGAATTAA
AAAACTTTATTTTCTCATTCTCAGCCTCAGCATGTTTCTTAGATGTTTCT
TAGTTTTAAGGCATTCTGAGCCTCGTGTTTCTTAAAATTGTGTTTCTTTA
AAAAAAAAGTGTAGCTGTCGGTAACTTTTAAAATCTATTCATGGTAAGTT
TGCACTCTTTTTTCTTTTACCTATAACTTTTGAAGGATTTCTTCAATCTT
TATAAATTTGGTATGTATCTTTGGAGAGATATTTCTCAGTGAAACAATTC
GAAATAAAAAATTCTTCAAAAAAATTCTAAAAATGAAAGATGAAAATAAG
GAAGAAAAAAATGAAGATCTTATGTAAAAGTGCTATAACTTTCATTTTCA
CTGGAGAGATTCTTTGATCTTAGGAGGTCATCACTGTGAAGAAATTTCAC
TAAAATATTTATTCAATATAAAGTTATGATACAAAGTTAACAAGTGATTG
ACCCCAAAAAACAAGATCTTCATTTTTTTCTTCTTCATTTTTATCTTCAT
TTTTATAATTTTTTTAAAGATATTTTTATTTCAAATTGTTCCACTCTCCG
CACTCTCCCACACAATCTTTCCAACGATACCAAATTTAAAAAGATTGAAG
AATTCCTTCAAAAGTTATAAGTAAAAGAAAAAAGAGTGCACACTTATCGT
GAACAGACTTTTAGTTTTGATTATTTCATTCCTCTACATACGTGTAATCA
AAAGGTCTTCAAAATCATCTTTTACAGCGTTCAGATGTCGAAAAATTCTT
TATCGAATCATTGGAAATGGTCAAAACTGAAATCATCAGAAATCGGTAAC
CGTATTTTTATTTTTCTGAATCAACTTTTTTTATAAGATTATTCAAAGAT
AACTTAAAATAATTGTGGCTAGAATATTGATGGTCACACAATTATGATCA
TTGAATGATAAATAGAACGGTTATTTTCAATTGTAGACCCAAATTCAATT
CAGTTTTCGTAATTTAACACTGTTATTCAAGTGATAGACAGATTTTATTA
GCGTGTAATCAAATTTCAATATTGTATTTAATATATGTACGCTTAATTAT
CGTATCAGCTGATATAACAACGAAAGTGTTTTTCGATGTCGAAAGCTCCT
TTTACATAAGTCACGTTTTGTATCCCAGTTTGCAGTGCTGGAAAATTTAC
CACTAGAAAGTTATCAAACGTGGCTTTTTACCGACAGGTTTCAAAAACAC
CAAAATTGTGTACGAAAGTAACCTTTGTTATACCTCTAACCTTTACACCA
CCCAGGAACTAGAAATAATCATAAAAGTTATGAGGGAAACACCAAGGCTA
CGATTAGCTCACAATAAAACCTTCCTGGGTATACGGTTAAACGCTTTTTC
GATCTACGAAGGCAACGAAAATATCTTTTCTTTTATCATGACAGTTCTCT
TGCAATTGCAGGAGGATAAAAACGCCATCAGTCGTGTCACGCACGGCCAG
GCAAAATGCCGAATGCATATCATCAATTAATGATATTCATGACGTAATAT
TATGTACGGAAAGACCCCGGTTTTTGCCAGTAGTGGCAAATTTTATACAA
CTTTTGTCTAGTTTAAATTTGCCACTACTGGCTGAAACCGAGGTATTTCC
GTAGAAAACATTACGTCATGAATATCATTAATTGAGATTAAATCTCTAAC
GTCGCATCTTAAAAATAAATAAATTTTGCTGTCATTCCTTCCCTGGAAAC
TAGACCCAATTCATTTGTAGTGTTTAGGATTAAGACCATGTTCAGACGCT
ACGGTTCCGTTCCGGAACAAGTGCAAACGTCAAAATTCGGAGCGTCAAAA
AAGAGGACGTTACAAAGCAAAATATATCGAAACAGTTTCGCTCCACTTTT
TTTATCGTAACGGAACTGCTCTGTTTTCTTGCTCCGAAACGTTCCGAAAC
CAATATGAACACATTCGATCCGTAACGCAAATCATACCGGAGCGAAACGG
AACAGTAACGTGTGAACATTGTGGAATAGATGTATTACTTCTTCGGAAAA
GAAATCTTTAATGTTTTTTTTTCAGTGCGCAATATCGACGAGACGCTGAA
GTAGCATACAATAAAAGAATGACCGAAGCACATTCTGGTCACTCTGATTA
TCCCAAAGTCCGCACATTTCGTCATCTAAAGAACAGCACTAATTCCGTGT
ACGCAGATCTACGCGCGGCCGAACGGTGGGATGGGTTTGACGCGTCGGTT
GATCTTTCAGAATTAACATGGGAACAGAGAGAACAGGTTCTTCGCTTGTT
GTTCGCTAAGATGAATGGCCAGAAAACGTGAGTTATAATTTGAATTCCGT
AATTATTTTTCATGCTTTCGAACTTTTTAGGTGTGAAATTTTAACTTATG
GGAATCTAGAAATCGGAGCTTTCTACCACGAAAATCGAAAAATTGAAAAA
TTTCAAAAATCAGATTAAAAAAGATTTGCGTGATACAATGTCAAAATGTC
TCACTCTCAAGCTCAAGGCTTTATTTAAAGGCTTATTTTTTTAAGGAAAG
TATTACTAAATATCTGCTATAATATTTCCTATAGATCAAAAGTCAGCAAA
AGTATACTTCCACCCATCAACAGTAAGATGGACGAAACTAAAGCTCATCA
ACCGAAACCACCTTCCGTTCAAAAAGCTTTTCTCACGGAAGCCGATGATC
CAAAAGAGGGTGTCAGTAGTGATGCAAGTAGGGTATTTTCAGCCACTGAG
ATCCTTGCTTTTACATGACTTTTATGACTTAGCAATTTTTAGGGTACTGA
TTATTTGTAATTAATTTTTTTTGAAAAGTTGTATATAATAGTTTGTGTAT
AGATTTAATCAGAATAGAATGTGATTTTATTTTATTACCTTGTAAAATAA
TTAATTTTTTAATGATGGTTTAATTTATTTTTTGGTAAAGACTGATTCAA
GGAAAAGTAATT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000328	XLOC_000328	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000002	supercontig	sc0000002:470542..486353 -

Expression

No biomaterial libraries express this feature.

Blast

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BLAST of TCONS_00000552 vs. Swiss-Prot (Human)
Match: BBOF1 (Basal body-orientation factor 1 OS=Homo sapiens GN=BBOF1 PE=2 SV=3)

HSP 1 Score: 337.806 bits (865), Expect = 1.654e-107
Identity = 192/477 (40.25%), Postives = 319/477 (66.88%), Query Frame = 1

Query:  148 NDDVLKQAIANACLWESRLGTVEVAKNEYRDTTRTLLHENEKLQTQVSQTEKETVDVLSFLRDEDIKKNNTINKLQLMIXXXXXXXXXXXQGFIDDYTKQIETLQTSLTDKTNEVKLMQSELKLVKEFRRKRALMQKEIDDIKDNLFMNEKQHENALEKIERKFFDEKIRMQQEANRKISELAERAHNEAISNLDDTTKSVYKENVRLNEALTYHIKAGEELSQHKENLEEQNKKLSSEKEMNSLXXXXXXXXXXXXXXANSSLQQKVDDLEKALTEVMSENNQKKTSLVQKHNQEQEGNKMEIARLQRIIELKNKEMSRVKKLAKNILDQRSDVEKFFIESLEMVKTEIIRNRAQYRRDAEVAYNKRMTEAHSGHSDYPKVRTFRHLKNSTNSVYADLRAAERWDGFDASVDLSELTWEQREQVLRLLFAKMNGQKTSKVSKSILPPIN----SKMDETKAHQPKPPSVQKAFLTE 1566
            ++ V+ +A ANA LWE+RL   E+++ +YRDT+R L   NE L+ +  + EK+ + VLS+L+ +D +K+N I KL+  + + K+  ++EK      YT+QI  L+     K  E+ ++ +ELK V++F++++  +++E+DD+K+NL   E+ H+  L ++E +FF+EK R++QEA +KI  LAERAH+EAI  L+D  ++V+KEN  L +AL YH+K  + L ++ + L+E +  L  +KE+N L+V+EK+++  + +    +LQ+KV +LE AL+ +  E   +   L Q    E +  ++EI +LQ ++++K++EM+RVKKLAKNILD+R++VE+FF+++L  VK +I+ +R  Y++ A+ A+N +M  A +G ++YPK+RTF   ++STNSV  DL  AE+W   + +VD+ +LTWEQ+E+VLRLLFAKMNG  + K ++S  PP+     S   ETK    +     K F+T+
Sbjct:   25 DESVVDRAKANASLWEARLEVTELSRIKYRDTSRILAKSNEDLKKKQCKMEKDIMSVLSYLKKQDQEKDNMIEKLKQQLNETKEKAQEEKDKLEQKYTRQINELEGQFHQKAKEIGMIHTELKAVRQFQKRKIQVERELDDLKENLRNTERIHQETLRRLESRFFEEKHRLEQEAEKKIIMLAERAHHEAIVQLNDAGRNVFKENDYLQKALAYHLKETDALQKNSQKLQESHTLLLHQKEINDLLVKEKIMQLVQQRSQIQTLQKKVVNLETALSYMTKEFESEVLKLQQHAMIENQAGQVEIDKLQHLLQMKDREMNRVKKLAKNILDERTEVERFFLDALHQVKQQILISRKHYKQIAQAAFNLKMRAACTGRTEYPKIRTFDGREHSTNSVNQDLLEAEKWTHIEGNVDIGDLTWEQKEKVLRLLFAKMNGCPSRKYNQSSRPPVPDYVVSDSGETKEFGDESKLQDKIFITQ 501

The following BLAST results are available for this feature:

BLAST of TCONS_00000552 vs. Swiss-Prot (Human)

BLAST of TCONS_00000552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1

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POSITION

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Match Name	E-value	Identity	Description
BBOF1	1.654e-107	40.25	Basal body-orientation factor 1 OS=Homo sapiens GN...	[more]

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TCONS_00000552 (transcript) - C. hemisphaerica

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