TCONS_00000549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000549
Unique NameTCONS_00000549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000549 ID=TCONS_00000549|Name=TCONS_00000549|organism=Clytia hemisphaerica|type=transcript|length=1838bp
tctcagttcaaaattattaaaaattatgtgaaaataatataaaagaaaat
aatgtaaacaaagatgccgaaaaaggccaaaaaagctaaaggaaaatcta
aaaaagacaaaaaaggAAGGAAGTCATCAAAAGGAGTCAAAGTCAATAAT
GACGACGTTTTGAAACAAGCTATAGCCAATGCTTGCTTATGGGAAAGTCG
TCTTGGAACTGTCGAAGTTGCCAAAAATGAGTATAGGGACACGACACGAA
CGTTGCTTCATGAAAATGAGAAACTTCAAACACAAGTATCACAGACAGAG
AAGGAGACTGTTGACGTCCTTAGTTTCCTGAGGGATGAAGATATCAAGAA
AAATAATACGATCAACAAACTACAACTAATGATCAAAGACTTGAAAAAAG
attacaagaaagaaaaacaaggaTTTATAGATGACTACACCAAACAGATC
GAAACACTTCAGACAAGTCTAACGGACAAAACAAATGAAGTGAAACTGAT
GCAATCGGAGTTGAAATTGGTGAAAGAATTTCGTCGGAAAAGAGCTCTCA
TGCAGAAAGAGATTGATGATATCAAAGACAATCTTTTCATGAACGAAAAA
CAACATgaacatgctctggaaaaaatCGAAAGAAAGTTCTTCGATGAAAA
GATTCGTATGCAGCAAGAAGCCAATCGAAAGATTTCCGAACTTGCTGAAA
GAGCTCATAACGAAGCTATCAGCAATTTGGACGATACAACGAAATCAGTT
TATAAAGAGAACGTTCGATTAAACGAAGCATTGACTTATCATATCAAAGC
TGGTGAAGAATTATCACAGcacaaagaaaatttggaaGAGCAGAACAAGA
AATTAAGCAGTGAAAAAGAAATGAACAGCCTCATCGTCGAAGAGAAAGTC
ATCGAAagcaagaaaattaaaaaagctaACAGCTCGCTTCAACAAAAAGT
TGATGACCTTGAGAAAGCATTGACAGAAGTGATGTCGGAgaataatcaaa
agaaaacatcCTTAGTTCAGAAACATAATCAAGAACAAGAGGGAAATAAA
ATGGAAATAGCACGGCTACAACGTATCATTGAACTAAAGAATAAAGAGAT
GAGCCGTGTCAAGAAACTTGCCAAAAACATCCTCGATCAGCGTTCAGATG
TCGAAAAATTCTTTATCGAATCATTGGAAATGGTCAAAACTGAAATCATC
AGAAATCGtgcgCAATATCGACGAGACGCTGAAGTAGCATACAATAAAAG
AATGACCGAAGCACATTCTGGTCACTCTGATTATCCCAAAGTCCGCACAT
TTCGTCATCTAAAGAACAGCACTAATTCCGTGTACGCAGATCTACGCGCG
GCCGAACGGTGGGATGGGTTTGACGCGTCGGTTGATCTTTCAGAATTAAC
ATGGGAACAGAGAGAACAGGTTCTTCGCTTGTTGTTCGCTAAGATGAATG
GCCAGAAAACATCAAAAGTCAGCAAAAGTATACTTCCACCCATCAACAGT
AAGATGGACGAAACTAAAGCTCATCAACCGAAACCACCTTCCGTTCAAAA
AGCTTTTCTCACGGAAGCCGATGATCCAAAAGAGGGTGTCAGTAGTGATG
CAAGTAGGGTATTTTCAGCCACTGAGATCCTTGCTTTTACATGACTTTTA
TGACTTAGCAATTTTTAGGGTACTGATTatttgtaattaattttttttga
aaagttgtatATAATAGTTTGTGTATAGATTTAATCAGAATAGAAtgtga
ttttattttattaccttgtaaaataattaattttttaatgatggtttaat
ttattttttggtaaagaCTGATTCAAGGAAAAGTAATT
Run BLAST on NCBI

transcript from alignment at sc0000002:470542..486353-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000549 ID=TCONS_00000549|Name=TCONS_00000549|organism=Clytia hemisphaerica|type=transcript|length=15812bp|location=Sequence derived from alignment at sc0000002:470542..486353- (Clytia hemisphaerica)
TCTCAGTTCAAAATTATTAAAAATTATGTGAAAATAATATAAAAGAAAAT
AATGTAAACAAAGATGCCGAAAAAGGCCAAAAAAGCTAAAGGAAAATCTA
AAAAAGACAAAAAAGGGTAAGAACTTTCTTTCATTTTTACTTCAAAAAGA
CTTATTTTTACTGAAAAAAAGCCTCTTCGACAAGGCTATAAGCAGAGGAA
ACAAAAAATGCTATAACTTCTTATAGAAATAGAACCAAATGTTTTTGTAC
TTGTTGAAAAGATATTCAGGAGTGGAACATTATTATAAAGAAAAAACTTT
TCTTTAAAAAATTTTTTTTCGCAAAAAGACTTTTTCACAGTGATAACACT
TTAAGATTGAAGATATTTTTATTTAAAAATGGTGACCATAGCACAATTAA
TTCTACAAGGGCTGGATTTTTCTCTTCTTTACTTTTCTTTATTTTTTTAA
TCTTAGAAGGAAGTCATCAAAAGGAGTCAAAGTCAATAATGACGACGTTT
TGAAACAAGCTATAGCCAATGCTTGCTTATGGGAAAGTCGTCTTGGAACT
GTCGAAGTTGCCAAAAATGAGTATAGGTAATGATTATTTTTCTAACAGAT
CATTCATTCTACCAGCACTTTGCTTTGCACTAAAGGTACAGCTCTCTTTT
AGTAATACTCATCCAATATCGATATTTACTTGGATAGTTCAGTAGTCTGC
TAATTTTAGACAGTCTTTTGATTATTTTCACCGGTCCAGGGCCAGTCGGC
TATCTATGAACTGAACAGAACATTGAAAGGAGCGGGGATTCGACTTTGGA
ATTTGTTTAATATTTTTATTCTTTATTTAAAGTTGGGGACGCTAATAGAA
ATACACAAGTATAATAGGAATTCTGATCAAATCCAACCAATTTCTAAGAT
AAAAAGAATTGTTAAACCTCTCAACCAATCTTAATAGGGACACGACACGA
ACGTTGCTTCATGAAAATGAGAAACTTCAAACACAAGTATCACAGACAGA
GAAGGAGACTGTTGACGTCCTTAGTTTCCTGAGGGATGAAGATATCAAGA
AAAATAATACGGTATTCATCAGTTTAATCATAACCATCATGGACCTAGAG
TTTTTTCATGGCACGATGAGTGTCCTCTCATTTGGGAGGGGCGGTTACAA
AGTTAGGGTACTTGACTAGTGCCATAAATGTGTACTAACCACTGACCTTT
ATATATCCCTGGAACAAGCTATATCCACCATCTTTGATCAGAGTTTTTTT
GGAATTGGTACCCGAGAAGAATCCATTGCAATGTTAAAAATTAACATATA
TAAAGGCCCTACATCATCAAAAGTATTCGAGATAAAGTAGATCTAGCGCT
CTCGATGCATTTTCACCATTTCGCCATTAGGGTACCAATTTCAAAAAATC
TCCGATCAAAGATTTTTGGTTGGCCGGAATTGAGTAACTTGGTCAAGGGT
ATATAAAGGTGAGTGGTACTAACATGGTTTTGGGAATGGAGTTTTGACCA
TCATCCGTTTGTACCTTAATATAAAAAGTTGAAAATATGCCTTCAATGTA
GGTAGACCACCCCTAACTAACTGGAATTACCTGTTAAAATCCTTATTTTG
ACGGGAAAGCAAGAGTAGAATTATACAGCCTAGTACCCAAAAATGTCCTA
AGTTTTTACTTCCCTTAAAAATAAAAAATAAACACTTTTTCTTAGGCACT
TTTCGATACTGAGGTATTATAATCGACTTTTTTTCTCCAAATTTGCACAA
GGTAAAGTTGAAAATCAGCTTTTAAATGAATTTCCAGCTTTGACCACTCC
ACTTAGTACATGGTACTAAGTTGTTTTTGACTTGCCAATTTTGACCATCA
ACCCCGGTAGTGGTCCCTACAATCTAGTACTGAGCCCCTGTTCAATAGAT
TTGATTTAGACCTCGACTTGGGGTTCCATCGATATCAAGGACAATCCTCT
CCAGGTCGACGAATAAGAAATCCATTGTACTCTATAACTTTTTTGAATTC
TTTACAGTATTCTATACATTGTCGCTTTCCTATTACAGTATCTGTAATAT
GCGAGAAATCGGTCTTGTTTTTTTCATTGCCTTTTCCTTGGTTCCATACG
TAAATATAACCGACATCTCTTCAGAAGTATGCAGTATGTTTTTTAATAGG
GATAATAATATATTTTCGTAATACTTTTCAAAAGGGTGGAAAATTTCTTG
CTCTACTGAAGAAATTTGAAATTCGATTGTCTTATTCGATCATTATTTTT
TTTGTTGGTCGTTCTGTTCAATTTAGTTCTTATTGATCCGATCGTCTATT
CCGTTCGACTGAGATTACCTACCGAGCAATTTTAATACATATGTATCTCA
TATGACATGGAGTTTTTGGCGGGAATTCGTTTGGTTTATTTTAGAGGCAG
CCTAAAAATGCCTTGCGCCGAGAGCAAGTAAATCTTGCTTGTAAATTCGT
TCCCATTCCTCTAAAAAAGGCGACCGCGCTGATGCAAAGGGTTGATTGAT
ACATTCGAACCTACACCATTCGGAGCTCAAGATTAATTGAAAGTCAACTG
TTGTTATACACGCTTTTTTTATTATAAGAACAAACTATATAAGAACATAA
GGCTTCGATGGCCAAAATGTGAAGAACAAGTTAAGAACATTTGAAGGCTT
TGCAGGGCTTTGCGGACTCGAAAACACCCTATTTCTTAGGAAAGTGGGTA
AGAATGGTCACAAAATGGTGAAAGTAAGCACATGTTAAGAACATTTTTAG
GCTTAAAACTGAAAAAGTTAAGAACATCCAAAGGTTTCAAAATTTTTGGA
TGTTCTTATAAAAAAAGGTATCTTTTATTATCCATAGATCAACAAACTAC
AACTAATGATCAAAGACTTGAAAAAAGATTACAAGAAAGAAAAACAAGGA
TTTATAGATGACTACACCAAACAGATCGAAACACTTCAGACAAGTCTAAC
GGACAAAACAAATGAAGTGAAACTGATGCAATCGGAGTTGAAATTGGTGA
AAGAATTTCGTCGGAAAAGAGCTCTCATGCAGAAAGAGATTGATGATGTA
TGAAATGTTTTTCTTCTTCGTTTTTTTATGGATTTTCTTTTAATAGACCT
TTTTGTAAATTACGTCACGAACATCACTTGCCTCGTATTCAAACAATTAC
CATGGTGATTGTGTCCCTTGAGACATTAAATGAATATTTTTTGATGAATA
GGAAGTAGTGGACTCCGCTGGGAGTTAATCACCATGGCAATAATTTCAAA
ACGAGGTAAGTGATGTTCGTGACGTAATTTATGAAAAGGTCTATTCGTTT
GGATATTATCATAATAATATAGAAAGGAGGCGCGTCTCTTATGCCGACAA
AGCAGAATCAACAAAATAGTTTCTCGTTACTCAAAATGTGTGCTCGTGCG
GTGGGAGGGGGGAATCTTTTTTTCTTTTTTTGTTTAAAACTGCTGAAAAC
GCAAATGGTAGGAGATCCGTTAAAAATATCCTTTAATATGCTTAAAATTT
CAAATTTTGATACAAATATTATGGAATTATGGTTAGCCACAGTCAAACTT
TTGATGTAAAGTCTCATTTCTTCTATTAGTAAGATCAGTGCATGGCCGCA
ATTCATAACATCTCGAATTAGAAATTCGTTGCAATTTCTAATTTGACGAC
CTTTACGGTATTTCTTTTTGCAGTTTGCGATTATTTCCAATCTCTTTTGA
TACTCGTTTTCTTTTTAGATCAAAGACAATCTTTTCATGAACGAAAAACA
ACATGAACATGCTCTGGAAAAAATCGAAAGAAAGTTCTTCGATGAAAAGG
TATGATTTTCACATTTTCATTTCCAATCTTGTTTAAGTTAAGAATGATAG
GGAAATTTCGTCGTTTGATCTAAAAATTATGCTTATTTATATCGATTATT
TCCTGCTTAACGCGAGTTTTTGATGTGATAACATCATTGTATTATAAACT
TTTTAGATTCGTATGCAGCAAGAAGCCAATCGAAAGATTTCCGAACTTGC
TGAAAGAGCTCATAACGAAGCTATCAGGTATATTAATGAAAAGGCATCTG
TTTCACGATTACCTCAAGGGGATTAATTTCCGCAAGGATTATATTTTGCG
AGTTTCGCGAGTTTTTTCAAAAACTTGCGAAATTTAATCCTCGCGAAAAT
TCATCNAAATTTTTGGATGTTCTTATAAAAAAAGGTATCTTTTATTATCC
ATAGATCAACAAACTACAACTAATGATCAAAGACTTGAAAAAAGATTACA
AGAAAGAAAAACAAGGATTTATAGATGACTACACCAAACAGATCGAAACA
CTTCAGACAAGTCTAACGGACAAAACAAATGAAGTGAAACTGATGCAATC
GGAGTTGAAATTGGTGAAAGAATTTCGTCGGAAAAGAGCTCTCATGCAGA
AAGAGATTGATGATGTATGAAATGTTTTTCTTCTTCGTTTTTTTATGGAT
TTTCTTTTAATAGACCTTTTTGTAAATTACGTCACGAACATCACTTGCCT
CGTATTCAAACAATTACCATGGTGATTGTGTCCCTTGAGACATTAAATGA
ATATTTTTTGATGAATAGGAAGTAGTGGACTCCGCTGGGAGTTAATCACC
ATGGCAATAATTTCAAAACGAGGTAAGTGATGTTCGTGACGTAATTTATG
AAAAGGTCTATTCGTTTGGATATTATCATAATAATATAGAAAGGAGGCGC
GTCTCTTATGCCGACAAAGCAGAATCAACAAAATAGTTTCTCGTTACTCA
AAATGTGTGCTCGTGCGGTGGGAGGGGGGAATCTTTTTTTCTTTTTTTGT
TTAAAACTGCTGAAAACGCAAATGGTAGGAGATCCGTTAAAAATATCCTT
TAATATGCTTAAAATTTCAAATTTTGATACAAATATTATGGAATTATGGT
TAGCCACAGTCAAACTTTTGATGTAAAGTCTCATTTCTTCTATTAGTAAG
ATCAGTGCATGGCCGCAATTCATAACATCTCGAATTAGAAATTCGTTGCA
ATTTCTAATTTGACGACCTTTACGGTATTTCTTTTTGCAGTTTGCCATTA
TTTCCAATCTCTTTTGATACTCGTTTTCTTTTTAGATCAAAGACAATCTT
TTCATGAACGAAAAACAACATGAAAATGCTCTGGAAAAAATCGAAAGAAA
GTTCTTCGATGAAAAGGTATAAATTTTCACATTTTTCCCAATCTTGTTAA
GTTAGAATGATAGGGAAATTTCGTCGTTTGATCTAAAAATTATATCGATT
ATTTCCCGCCTAACGCGAGTTTAATTGTGATAACATCATTATGTATTATA
AACTTTTTAGATTCGTATGCAGCAAGAAGCCAATCGAAAGATTTCCGAAC
TTGCTGAAAGAGCTCATAACGAAGCTATCAGGTATATTAATGAAAAGGCA
TCTGTTTCACGATTACCTCAAGGGGATTAATTTCCGCAAGGATTATATTT
TGCGAGTTTCGCGAGTTTTTTCAAAAACTTGCGAAATTTAATCCTCGCGA
AAATTCATCTTGCACAGTTTGTCCATGTTTGTCTCTTGAAATCTCAAAAA
CCCTTAGGAAATTGAAAGAAAATAGTCAAAGAAGGTAATTATCTCGCGAA
AATAAGTCCCGCCAAGATTAAATATTTTCGCGAAAATGTCTTCCCGTGAA
AATTAATCCCCTAAGGTATTCAGTCCACTTGCCAAAACGCATAGCAGAGT
TGTTCTCTTTGACTTCTGTTTGATTTCTGTTGATTATGTATGTTTACTAA
CTGATTTTTTATCTCTTTATTCTTTTTTGACGTTTTGAGAATTCTAGAGA
TGGTGAAGAAGATTATCTTTTTCAATGGTTATTATCAGATTTACAAAATA
TTTTGGATTTGGGAAAAATGAAGATAGGGCAAATATACGCGAAGAGCATG
GCTCTGTGACTTCCAATCTCGCACAAGGTTTCTTATGGCAAAGATATAAC
GGCCTTATCCGTTACATTGCAATACGAAGCGCAAAATTCCTCATAATTAT
GTGATTTTTAAATCGTTGGTTGAAATAACACATGCAAGACCATTTTCCAT
TCCATTATACAGTTGGGTGTCTTTAGCTCGAACCTTCATAGCTCGAATGT
CTTCTTGACACGAACAAGTTTTATGGTTTCAGTTAACAATGTCTTATAAA
CCTTACTCCAAAACTCGAACAATATTGTGTTCCCCGTGCGTGTTCAAGTT
ATAGAGACTCCACTACTGTACATGTTTTTTTATAAGCATATTTTTTTTGA
AAAACAAGTTATGCTTATGCTACATTTTGAAATCAAGCTCAAATTATGCT
TGTGATATGCTTATTTTTCCGAAAAAATTGGTTCTTTAAAAATGGAAAAG
AAATGACCAAAGGCCAAAGCTCACTGATATGCTAATGATATGCTTATCTT
TTCACCAGCCCAGGTCTTAGTATGCTTATAAACGTTATGCTTTTAAAAAA
ACATATATTTCAGCATTCTACAGAATAGCGCTCCGCAACGCATACGTCAT
AATTATTACTTTTCACTTCTTTTTGACATTTGTACGAAATGCAATCCCAC
AATTCAATGCGGCTCAATTAAAGATACGTGCAAGTTGTTGTATACAGCTT
TTGTGAAATGATGCAATTAACGTGAATAGAGATTTTTAACTCAAAGGTTG
ACAGGATTGGAACTCGTACAAACACATCGAAAGTAATGATTAAGTCAAAA
ATGAAATCTATTTTAGATTCAGTGCAGTGCGCTATTAACTTCTCCAATTT
TAACTCGTTCTCTTTCCCATATTACGCAGCAATTTGGACGATACAACGAA
ATCAGTTTATAAAGAGAACGTTCGATTAAACGAAGCATTGACTTATCATA
TAAAAGCTGGTGAAGAACTATCACAGGTTTGTGTTGACTACNCCCCTGTT
ACGCAGCAATTTGGACGATACAACGAAATCAGTTTATAAAGAGAACGTTC
GATTAAACGAAGCATTGACTTATCATATCAAAGCTGGTGAAGAATTATCA
CAGGTTTGTGTTGACTACATTATACTTAAAATCTATCACTTAGCAAAAAC
CTTCAAGTTTAAAAATCTTGAAAGATACTCCCACAAAACTGATGCATTTA
AGCTACCATCACAGCGTTACTGCAAATTATACTTAAAATCTATCACTTAG
CAAAAACCTTCAAGTTTAAAAATCTTGAAAGATACACCCACAAAACTGAT
GCATTTAAGCTACCATCACAGCGTTACTGCAAATTGTTCAAATATTTTTT
TTTATTTGACATTATGTTAACCACCCTGGACTTTTCTTCCTCAACATATG
GTAACCACCCTGGATTTTTACACTCAAGAAACCGGACCACCCTGGATTTT
TTATCTTCCATATCACCCTGGACGTCACACCTCCCCCAACATAGGGGGTA
CACACTATTTCTGGAATAGCCAAATGCGTGTATACACCAAAGAAGAGTTG
AACCAGGGCTTTCTCAAAAATATTCACCCTCCCCTCGTTGAGGTCATGTC
AAGGACTTGAAAAATGGTTCTTAATGCCTCTCTGCTGACTGTTCTGAAAT
AAAAAAACCTATATCCAAGGGAAAAGAATGGCGTACTCTCTACATGTTTT
TTTTATAAGCAAGTGTCTGCCCCTTGATCAGGCTCGTGTATGCATAAATT
CTCAAAGCATCCAGGCATAGCTTTTGCTAATTATATGCTTATGAATCATG
CTTATCATTCACCCCGAGCCAACTTTTTAGTAAATTTTCAGAAACTTTGT
AAACATTTGTTCAGATTTTGGGAGCAGTGGAATGTAGCTAGCCGTGGAAT
GTCTTTATTTTTACTTGACCTCTACCAAACCTTTTTAAACATATAAGAAA
TGACAACTTGAAAAATATTCCAGGCTGACATATATGCTTATGTTCTGCTT
ACAAATTCTGCAAATACGAGTCTTAATATGCTTATAATCGTTATGCTTAT
GAAAAAATGTACCTTCGGGTAGACATCTATCTACCTATATGAAAAAGGAG
TCTTTGGTCGCCCCCCCCTTACGTGTTGCAAACCTACTTCAACTATAGAG
ATTTCTTCTTTTCAGCACAAAGAAAATTTGGAAGAGCAGAACAAGAAATT
AAGCAGTGAAAAAGAAATGAACAGCCTCATCGTCGAAGAGAAAGTCATCG
AAAGCAAGAAAATTAAAAAAGCTAACAGCTCGGTAAGAATGCTGTAGAAA
TTCGAAATTTGTCATTCTCAGTGACCGTCCTTTTTGTTTTGTTTATTCGG
CAATCCCCTAAAATCAATAACGCGTTTTGAATTAAATTTTTTTGATTTTT
GAAGAAAATAATTAAAACTAAAACATAACAAAAAAGGACGCTTAGCTCTC
GCTCTTATTTAACCTGTTATTTGCCATATCTTAGTTAAAAGACCATTTCA
AGACCGATCCAATTTTCAAAATCTGGAAACTTATATTACCGGGAATATGA
TTTATTTTTGACGTATCTTTAATGTCATTTACTTTACAATTTTTCCTTTA
ATTTCATTTATAGTAAAACAAATTCAAAAAAAAATTACGATTTTGAATAA
TCTTGACATATTAACAGGCCTTTAAATGGCCAAAAATGCCAAAGAAACTT
TTCTAATTTTTGCCTGTAGTGCGAATCAGGACCCCCAGAAGGGTTCGGCC
AATTTTGGACTTCGTCTATTTATTATTTGTATCCCATTTATAGCTTCAAC
AAAAAGTTGATGACCTTGAGAAAGCATTGACAGAAGTGATGTCGGAGAAT
AATCAAAAGAAAACATCCTTAGTTCAGAAACATAATCAAGAACAAGAGGG
AAATAAGTAAGTTGGAATTCTACATGGTACTATGTTACAGGGGTCATGTT
ACAGACTGTGGTGCAGTGGTAGAGCATCCGGCTACGGTTCGCAAGGTTGT
GGGTTCAATCCCTAGCTTGGTCATACCAAAGATTCCAAAATGGTACTTGA
TGCCTCTCTGCTTGATGCTCAGTAATTAAGATAAGGATCAAGGATGAGTG
GAGCGAGCCAGGGAAAAAGAGTGGCGCCCTCCCCTACCTTCGGGTAAATA
GCTATCGAAAGAGGAGCTATCGGGTCGCCTCTGACAGCAGTCACAGACTT
ACTTAAATTCTCGCATCGCTGAGATTTTTTAGATACACAATGCTTCTCGT
GCTTGTTCTGATTTTTTGCACAATTAAGTAAAATAGTAATTCCCAAAATA
TGATAGAGGCCAATTTTCGATTAAAAATCTTTCCGGCCGCCAGAACCTGA
AAAAGCGGTTTTTCTGGATTTTCTCGAGATTTTATCTTTTTTTTTTCCTG
ACTTGTTTATTTTGAATTTAATTTTTTTTGTTGAACAGACGGGTAGGTCC
ATTAAAGTATCACTTTTTTCATTAATTTTTATTAATTAACTTTTACAGAA
TGGAAATAGCACGGCTACAACGTATCATTGAACTAAAGAATAAGGAGATG
AGCCGTGTCAAGAAACTTGCCAAAAACATCCTCGATCAGGTAAGACAATT
AACTTATCATTTTCTTATTTGTATGGCTCTTAAAATCAGAGCTTGGCATG
GGTTTACGGCAACACTGTTTTACCGACGAGTTCTTCGACAGGTTTTGAAG
GATCCTGTAAAGCCTCAACTCGTCGTAGTCATAGATTTATAAAGCCCGAA
GGGCTAGATGTCGTGCTTTGGCTGAAATGTGTTCAATATGCTGATGACAC
GACTATATATCGCCACACCAAACCAAACGAGCTTGAAAATTGTGTCACTG
AAATGAACTCTGATATTAGAGTAATTGAGAAATGGTCGCTGGATTCGAAC
TTGATATTTAACGCCAGAAAAACTAAATCGATGCTCTTTGCCACATCTCA
AATGGCAAGGAGGCATGATTTTGAATTCGAAATCAAGTCAAATAACGAAA
ATGTGATTGAGCGTGTTCCCCTATTCAAGCTGTTGGGAATCATCTTCACC
GAAAACCTAACATGGAATGAACATGTCAAAAAAATCGTCACTAAAGCATA
TGGTACGCTGAAGAGTCTATCACTCATCAAACGATATTTACCATACCGTG
TACGACGCCAATTGGCAGAATCTCTTGTATTGAGTAAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTGACTTTATTATATTTCTAGTTCTATGAAGTTT
TTTTTCTTTTCTATTTGATGTTTAATTAGTTTCAATTAATTTAATTTAGA
TAGTTGATAGCTCACTGGTCGTGTTTTGCAAGGTCCAGTACACTTTTACA
CAGCCTTCGGTTTGCAATCTATGCTAGTTTTGCTCATAATATCTTACGCT
CTGTCGTGATTCTATCTCACCGAGTTCTTAGATCTATTTTGTCGCTTACT
TTATCTCTAGCCATCAATAGTACTTGAGCCTTAGTCTAGTCTAGCTTATA
ACATTATGTTAGTATTTTTTTTTTAAATATATTCGTTAATTTTTTATAAT
AGCACACATTGCGATGGCCTCAGCTAGCATACTCAGATACTCGGATTTGT
TTAGGTTTTAGTCTAGCTCTATCACTATTCACATTTTACCCCTCAATCCT
AATCTTTTATTCATCATACTAGCCCACCGCTTCGTCCCTATCTGTTTGTC
TATACNTTACAGAATGGAAATAGCACGGCTACAACGTATCATTGAACTAA
AGAATAAAGAGATGAGCCGTGTCAAGAAACTTGCCAAAAACATCCTCGAT
CAGGTAAGACAATTAACTTATCATTTTCTTCTTTGTATGGCTCTTAAACT
CAGAGCTTGGCATGGGTTTACGACAACACTGTTTTACCGACGAGTTCTTC
GACAGGTTTTGAAGGATCCTGTAAAGCCTCAACTCGTCGTAGTCATAGAT
TTATAAAGCCCGAAGGGCTAGATGTCGTGCTTTGGCTGAAATGTGTGCCG
AGGTTAGGTAGGATTCCTAACTGAAGTCTGTCTCAAAATAATTTGCAGCT
GGAGACAAAAATGGCTGTAACTTTAGATAGAATACGAATCAAGTTGTGAG
TGGAATATTATCAAGTAAAAAATTTGAGAAAAAAAAGGAAAATGAAAATG
AAAAATGAAGAAGAAAAAAAATCAACTTCTTGTAGAAATGTGGTATAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCAATCAAAAGATATCAAACAAAGTTTATTGCTGGTTGATCGACA
AAAGGCTGTTTTTTGTCGTTTTTTACTACTTTATAGAGTCAACCAGCAAT
AAACTTTATTTGATATCTTTTGATTGAATGAATATTTTTTTGAACCATTT
ACTTGATAATATTCCACTCACGAATATCTTTTTAACGAGCACAAAATCGC
TACTTGATTCGAATTCTATGAAAAGTTACAGCCATTTTTGTCTCCAGCTG
CAAATTATTTTGAGACAGACTGTAGGTCACGTGACATTACAATAGAATTT
CAGCGCTTGACCAATCTTTGCAGGTTTTCGAAAACAATAGCAGCAATATT
CTTTGCCATATTCACTTTTTTTTTGCTTAAAGCACGACATCTAGCCCTTT
GGGCTTTACTGAAATCTGTAGTCGTTGTCTTGCTTTTCAATCAATCTTTT
CATTGAGTATTATTAAAAGTCCACTCCTTCTTCACTATTGCGTTGATGAT
GTATTCGCATACAATAATAATCTCAATAATGCACGATAAAAAGCTGACAT
TTTTCAATATATTAAGTTCTCTCTCTTTTTCTCTATATTAAGTTCAAAAG
TGACAATGACCGGGGGGTAAATTTCCAAGAAATGTTATATCCTCCACCTC
CACCCCCCCCCCATATTCAAATTTTTTTCTGTATAAGCCCATTGCTGCTC
ATTACCGTGAAGACACCTAAAACGTCGCTTTTCTTGTGATACGTTTTTTT
AAGAAACTAAGAAACCAAGCAGCCTCTCAATGTTTCTTAAGAAATCGGCT
TTTTGAGCCTTAAATGTTTCTTACATGTTTCTAAACTTTTTGACATAATC
AGCCTCGTGTTTCTTAAATTTTGCTTCTTTCAAAAAAAAAACCGAATTAA
AAAACTTTATTTTCTCATTCTCAGCCTCAGCATGTTTCTTAGATGTTTCT
TAGTTTTAAGGCATTCTGAGCCTCGTGTTTCTTAAAATTGTGTTTCTTTA
AAAAAAAAGTGTAGCTGTCGGTAACTTTTAAAATCTATTCATGGTAAGTT
TGCACTCTTTTTTCTTTTACCTATAACTTTTGAAGGATTTCTTCAATCTT
TATAAATTTGGTATGTATCTTTGGAGAGATATTTCTCAGTGAAACAATTC
GAAATAAAAAATTCTTCAAAAAAATTCTAAAAATGAAAGATGAAAATAAG
GAAGAAAAAAATGAAGATCTTATGTAAAAGTGCTATAACTTTCATTTTCA
CTGGAGAGATTCTTTGATCTTAGGAGGTCATCACTGTGAAGAAATTTCAC
TAAAATATTTATTCAATATAAAGTTATGATACAAAGTTAACAAGTGATTG
ACCCCAAAAAACAAGATCTTCATTTTTTTCTTCTTCATTTTTATCTTCAT
TTTTATAATTTTTTTAAAGATATTTTTATTTCAAATTGTTCCACTCTCCG
CACTCTCCCACACAATCTTTCCAACGATACCAAATTTAAAAAGATTGAAG
AATTCCTTCAAAAGTTATAAGTAAAAGAAAAAAGAGTGCACACTTATCGT
GAACAGACTTTTAGTTTTGATTATTTCATTCCTCTACATACGTGTAATCA
AAAGGTCTTCAAAATCATCTTTTACAGCGTTCAGATGTCGAAAAATTCTT
TATCGAATCATTGGAAATGGTCAAAACTGAAATCATCAGAAATCGGTAAC
CGTATTTTTATTTTTCTGAATCAACTTTTTTTATAAGATTATTCAAAGAT
AACTTAAAATAATTGTGGCTAGAATATTGATGGTCACACAATTATGATCA
TTGAATGATAAATAGAACGGTTATTTTCAATTGTAGACCCAAATTCAATT
CAGTTTTCGTAATTTAACACTGTTATTCAAGTGATAGACAGATTTTATTA
GCGTGTAATCAAATTTCAATATTGTATTTAATATATGTACGCTTAATTAT
CGTATCAGCTGATATAACAACGAAAGTGTTTTTCGATGTCGAAAGCTCCT
TTTACATAAGTCACGTTTTGTATCCCAGTTTGCAGTGCTGGAAAATTTAC
CACTAGAAAGTTATCAAACGTGGCTTTTTACCGACAGGTTTCAAAAACAC
CAAAATTGTGTACGAAAGTAACCTTTGTTATACCTCTAACCTTTACACCA
CCCAGGAACTAGAAATAATCATAAAAGTTATGAGGGAAACACCAAGGCTA
CGATTAGCTCACAATAAAACCTTCCTGGGTATACGGTTAAACGCTTTTTC
GATCTACGAAGGCAACGAAAATATCTTTTCTTTTATCATGACAGTTCTCT
TGCAATTGCAGGAGGATAAAAACGCCATCAGTCGTGTCACGCACGGCCAG
GCAAAATGCCGAATGCATATCATCAATTAATGATATTCATGACGTAATAT
TATGTACGGAAAGACCCCGGTTTTTGCCAGTAGTGGCAAATTTTATACAA
CTTTTGTCTAGTTTAAATTTGCCACTACTGGCTGAAACCGAGGTATTTCC
GTAGAAAACATTACGTCATGAATATCATTAATTGAGATTAAATCTCTAAC
GTCGCATCTTAAAAATAAATAAATTTTGCTGTCATTCCTTCCCTGGAAAC
TAGACCCAATTCATTTGTAGTGTTTAGGATTAAGACCATGTTCAGACGCT
ACGGTTCCGTTCCGGAACAAGTGCAAACGTCAAAATTCGGAGCGTCAAAA
AAGAGGACGTTACAAAGCAAAATATATCGAAACAGTTTCGCTCCACTTTT
TTTATCGTAACGGAACTGCTCTGTTTTCTTGCTCCGAAACGTTCCGAAAC
CAATATGAACACATTCGATCCGTAACGCAAATCATACCGGAGCGAAACGG
AACAGTAACGTGTGAACATTGTGGAATAGATGTATTACTTCTTCGGAAAA
GAAATCTTTAATGTTTTTTTTTCAGTGCGCAATATCGACGAGACGCTGAA
GTAGCATACAATAAAAGAATGACCGAAGCACATTCTGGTCACTCTGATTA
TCCCAAAGTCCGCACATTTCGTCATCTAAAGAACAGCACTAATTCCGTGT
ACGCAGATCTACGCGCGGCCGAACGGTGGGATGGGTTTGACGCGTCGGTT
GATCTTTCAGAATTAACATGGGAACAGAGAGAACAGGTTCTTCGCTTGTT
GTTCGCTAAGATGAATGGCCAGAAAACGTGAGTTATAATTTGAATTCCGT
AATTATTTTTCATGCTTTCGAACTTTTTAGGTGTGAAATTTTAACTTATG
GGAATCTAGAAATCGGAGCTTTCTACCACGAAAATCGAAAAATTGAAAAA
TTTCAAAAATCAGATTAAAAAAGATTTGCGTGATACAATGTCAAAATGTC
TCACTCTCAAGCTCAAGGCTTTATTTAAAGGCTTATTTTTTTAAGGAAAG
TATTACTAAATATCTGCTATAATATTTCCTATAGATCAAAAGTCAGCAAA
AGTATACTTCCACCCATCAACAGTAAGATGGACGAAACTAAAGCTCATCA
ACCGAAACCACCTTCCGTTCAAAAAGCTTTTCTCACGGAAGCCGATGATC
CAAAAGAGGGTGTCAGTAGTGATGCAAGTAGGGTATTTTCAGCCACTGAG
ATCCTTGCTTTTACATGACTTTTATGACTTAGCAATTTTTAGGGTACTGA
TTATTTGTAATTAATTTTTTTTGAAAAGTTGTATATAATAGTTTGTGTAT
AGATTTAATCAGAATAGAATGTGATTTTATTTTATTACCTTGTAAAATAA
TTAATTTTTTAATGATGGTTTAATTTATTTTTTGGTAAAGACTGATTCAA
GGAAAAGTAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000328XLOC_000328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000549-exon-sc0000002-1575043694:486238..486353TCONS_00000549-exon-sc0000002-1575043694:486238..486353Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1575043694:485778..485897TCONS_00000549-exon-sc0000002-1575043694:485778..485897Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1575043694:485293..485416TCONS_00000549-exon-sc0000002-1575043694:485293..485416Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1575043694:483307..483516TCONS_00000549-exon-sc0000002-1575043694:483307..483516Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1575043694:482555..482635TCONS_00000549-exon-sc0000002-1575043694:482555..482635Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1575043694:482327..482397TCONS_00000549-exon-sc0000002-1575043694:482327..482397Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1575043694:479351..479447TCONS_00000549-exon-sc0000002-1575043694:479351..479447Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1575043694:478172..478288TCONS_00000549-exon-sc0000002-1575043694:478172..478288Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1575043694:477548..477660TCONS_00000549-exon-sc0000002-1575043694:477548..477660Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1575043694:474951..475041TCONS_00000549-exon-sc0000002-1575043694:474951..475041Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1575043694:472659..472726TCONS_00000549-exon-sc0000002-1575043694:472659..472726Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1575043694:471177..471428TCONS_00000549-exon-sc0000002-1575043694:471177..471428Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1575043694:470542..470919TCONS_00000549-exon-sc0000002-1575043694:470542..470919Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1510915933:486238..486353TCONS_00000549-exon-sc0000002-1510915933:486238..486353Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1510915933:485778..485897TCONS_00000549-exon-sc0000002-1510915933:485778..485897Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1510915933:485293..485416TCONS_00000549-exon-sc0000002-1510915933:485293..485416Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1510915933:483307..483516TCONS_00000549-exon-sc0000002-1510915933:483307..483516Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1510915933:482555..482635TCONS_00000549-exon-sc0000002-1510915933:482555..482635Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1510915933:482327..482397TCONS_00000549-exon-sc0000002-1510915933:482327..482397Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1510915933:479351..479447TCONS_00000549-exon-sc0000002-1510915933:479351..479447Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1510915933:478172..478288TCONS_00000549-exon-sc0000002-1510915933:478172..478288Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1510915933:477548..477660TCONS_00000549-exon-sc0000002-1510915933:477548..477660Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1510915933:474951..475041TCONS_00000549-exon-sc0000002-1510915933:474951..475041Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1510915933:472659..472726TCONS_00000549-exon-sc0000002-1510915933:472659..472726Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1510915933:471177..471428TCONS_00000549-exon-sc0000002-1510915933:471177..471428Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1510915933:470542..470919TCONS_00000549-exon-sc0000002-1510915933:470542..470919Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1491911889:486238..486353TCONS_00000549-exon-sc0000002-1491911889:486238..486353Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1491911889:485778..485897TCONS_00000549-exon-sc0000002-1491911889:485778..485897Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1491911889:485293..485416TCONS_00000549-exon-sc0000002-1491911889:485293..485416Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1491911889:483307..483516TCONS_00000549-exon-sc0000002-1491911889:483307..483516Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1491911889:482555..482635TCONS_00000549-exon-sc0000002-1491911889:482555..482635Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1491911889:482327..482397TCONS_00000549-exon-sc0000002-1491911889:482327..482397Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1491911889:479351..479447TCONS_00000549-exon-sc0000002-1491911889:479351..479447Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1491911889:478172..478288TCONS_00000549-exon-sc0000002-1491911889:478172..478288Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1491911889:477548..477660TCONS_00000549-exon-sc0000002-1491911889:477548..477660Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1491911889:474951..475041TCONS_00000549-exon-sc0000002-1491911889:474951..475041Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1491911889:472659..472726TCONS_00000549-exon-sc0000002-1491911889:472659..472726Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1491911889:471177..471428TCONS_00000549-exon-sc0000002-1491911889:471177..471428Clytia hemisphaericaexon
TCONS_00000549-exon-sc0000002-1491911889:470542..470919TCONS_00000549-exon-sc0000002-1491911889:470542..470919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:470542..486353 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (36.7499 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	8.38518	3.48476	11.9346	6.09023	7.98226	14.2025	5.40872	12.451	2.00149	3.03247	0	0	0	0	0	0	0	0	0	0	36.7499	9.80559	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
20040060080010001200140016001800Expect = 1.88e-107 / Id = 40.25SequenceBBOF1
Match NameE-valueIdentityDescription
BBOF11.879e-10740.25Basal body-orientation factor 1 OS=Homo sapiens GN... [more]
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