TCONS_00000532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000532
Unique NameTCONS_00000532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1890

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000532 ID=TCONS_00000532|Name=TCONS_00000532|organism=Clytia hemisphaerica|type=transcript|length=1890bp
ATTAACAAATCTTATCAATTTGGCTTTACATAGGAACAGTATTGAAAAAG
TTGGAGATTTCTTTAATCATTTACCGAAGCTGAAATTCTTTGATATGTCT
TTTAACAAATTGACAAGTCTACCAGAGCAATTAAATTTAGGTACTGTACA
CACGTTGAATTTATCTAATAACGAGTTGGCGTCTTTAGGTGATCTAAGTG
GGGCTGTTAATCTTAGTATTTTACACATAGAACACAATGAGCTAGAAGAA
TTACCTACAGGGTTAGTCACCTTAAAACATCTATTAGAAGTGCACGCCAG
CAATAACCTAATAAACACCTTACCTGACGATCTACACACTTTTCCCGCGC
TGAAATTATTTGACGTCTCCGAAAACAAGTTGAAAGAAGTACCACACTCA
ATGTCTCAATGCCAACGTTTGAAGACGCTCAAACTTGAAGGGAACCCCCT
GAAAGATAATCGATTACGTAAGATGACAACACAGTGCAATACTAGAGCTA
TACTGGAATACATTGCCAAGCAGAGTGGTGGAGACGGGGGTAAGAAGggc
aaaaaaggaaagaaagggAAGAATCAACCGGTTAAGGAAGAAGCAGAAGA
GAACGTCAGACGTATCGTGATCACTCCGAACACGGATGATGAGAAGCGTG
TCATATGTGACGCCTCCGTGAAAGACGTACGCCCGTATTTGTGTTGCACC
GTCATAAAGAATCTTGACCTGTCGGATGAAATTGTCTTCAAAAACTTCTT
ATCCCTACAAACGAAACTTCACGAGAATGAATGTGACATGCGCACACGTG
CTACCATTGCAACCCATAATGCAACAGGATTGAAATTCCCGCTTGTTTTC
AAAGCTTCGCATGTGGGTCAGACTGTCATCCATGCATTAGGGAAAAAGAA
ACAATGCAATGCGACAACATTGATACAGAATCTGAAAGATGAAAGAGATG
CATTGAAgcagaaaaagaaaagacaacCGAAAACTGGATTGTACAAGTTT
ATTGAACTGGTGGATGGACAGGAGATGATAGCTTCAGTTCGAAATCAAGA
TGGTGACGTCATTTCGTTGCCTCCGATCACTAATGGTGAAAAAACCaagA
TCGGTGCTTCAGTTGGTGATGTTTTCATTGAAATATCATCACCAGTCAGT
ATCGCACAATGCAAGTACGTTATGGAAGAGTTGATCAAGAAAATGTTCCA
ACAGAATTTCAACTCGGACATGGAAAGTGATGAAGGGCTTTGGATTGAAC
CAATCAGAGTTGtggatgaaaatgaagatttgagaATAGTTTATCCCTCT
AAAATTGATAtcgatttttcaaatattccaGTCAAACGACTGTGAAATGA
TTTGATTGACCGGATTTAGACGATTCTACTACTTCCCAGGTTTTCCATCA
TTGTCTTTGAAGATGATATCATGTATAAGGACTTTGAACTTGGCTTTGAA
GGATTGtacttcaaaataatttgatgttGCATCCTTGACTAGTCAGTCAT
TTGgttgattttcatatttttggtcATCACTCAAAAGGACTGTTGAATTC
TGTCCAACATATATGTCATCAACTGCTGTTTCATTCCACGAAGTTGTATT
TGAAGTTTAGATTTTTTGAacgaatttaaatatttccGAAAACATAAATC
TATAATTAAGTCGATCAAAGACTCTATAACTACCTTTGTTAAATGCCCTA
AATTCTACCAAGGAAATCGAGTGCTATTACGACATTTAGTGTAGTGCCAG
TGTTGATAAACGTTGATCAAAACTCGCCTATCTGTCGCCCATCAGTCAAT
TCCgtgacaaaattatttttaagcaTCTCGTTAAGTAAGTGTGCTCAATT
AAAAGAAACATCTTTAATAAGTTTCTGTTTATCAGTCCca
Run BLAST on NCBI

transcript from alignment at sc0000002:400832..413686-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000532 ID=TCONS_00000532|Name=TCONS_00000532|organism=Clytia hemisphaerica|type=transcript|length=12855bp|location=Sequence derived from alignment at sc0000002:400832..413686- (Clytia hemisphaerica)
ATTAACAAATCTTATCAATTTGGCTTTACATAGGAACAGTATTGAAAAAG
TTGGAGATTTCTTTAATCATTTACCGAAGCTGAAATTCTTTGATATGTCT
TTTAACAAATTGACAAGTCTACCAGAGCAATTAAATTTAGGTACTGTACA
CACGTTGAATTTATCTAATAACGAGTTGGCGTCTTTAGGTGATCTAAGTG
GGGCTGTTAATCTTAGTATTTTACACATAGAACACAATGAGCTAGAAGAA
TTACCTACAGGGTTAGTCACCTTAAAACATCTATTAGAAGTGCACGCCAG
CAATAACCTAATAAACACCTTACCTGACGATCTACACACTTTTCCCGCGC
TGAAATTATTTGACGTCTCCGAAAACAAGTTGAAAGAAGTACCACACTCA
ATGTCTCAATGCCAACGTTTGAAGACGCTCAAACTTGAAGGGAACCCCCT
GAAAGATAATCGATTACGTAAGATGACAACACAGTGCAATACTAGAGCTA
TACTGGAATACATTGCCAAGCAGAGTGGTGGAGACGGGGGTAAGAAGGGC
AAAAAAGGAAAGAAAGGGAAGAATCAACCGGTTAAGGAAGAAGCAGAAGA
GAACGTCAGACGTATCGTGATCACTCCGAACACGGATGATGAGAAGCGTG
TCATATGTGACGCCTCCGTGAAAGACGTACGCCCGTATTTGTGTTGCACC
GTCATAAAGAATCTTGACCTGTCGGATGAAATTGTCTTCAAAAACTTCTT
ATCCCTACAAGTATGCATTTTATTTACTTNNNNNNNNNNNNNNNNNNNNN
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GCTTCTGGGCCACCTGGATTTCTCACCTGGGTATCCATAATGGCGGATTT
TTGGTCATGTGACCCCCGTAGGCAAAACTGAAAATTCTTCCAACCCGAAT
ATAGGCATATCATATATCAATCGATCGGAAATTCGATACTGATTAATTTT
GAGATACAAAGTTGAGTCTGAAAACTTTTCTATCTCGAGATATAAATCAC
TTTCGTTTTCTCAGGTTTGGCTGCAGTTGTAGGCGGGCTTTCATGGAGTG
AGGCAATTCTTTTACTCATATCTCAAGAAATATGCTTTTAAACATATCAA
AACTTTATGTGCTCCTAGAAAAGGCATTAAAAATTGTTTGTGCAAATTTT
CAATAAGTTTGCAGTAAAAATGTGTATTTTACAGACCAGAGTACAATTTC
CTTACCGTTGAAAAAAGATCTTTTTCTCTCATAATTAGCCTTTTTGTCTG
AAATGAATGAGTGAAATGTTTCCCAATAGGGTTTAAAACCAATCACTTAT
TCGTAATCTCACTCAGAGGGGTACTTAGCAACAAGTAAGGGCTAAATGTA
TCCGGTCAGCACTTTATAAGTACCTATGATTTACGGTAAGACATGATCCC
AAAAACGGTGAAATTTCCAAATAATTAATGAAAAATTCTCTCATTGCATC
TCAACATTAAACGAGAACCTTCTGTTCTTTAGATTGACTAATGCAAAGAA
TTATGAATAATGTAAATCGTTACAGTGTGTATTTTTACAGACCAGATTTA
AGTGCTTCTAGGAGCTTGTCTTGTTCTAAAACGCTTTGGATTACTACAGA
AATTCGCGAACTTGAGAATTTACTGAGTTAATCCGTCAAAATTCGCCAAT
TCCTTTATCTTTATTGTTCATGCATGAAACGAGATTTAGAGGGCTTAGAA
TCTGTGTTGTCTGTAGGGCCAAAAAATGTCGGCCTAATATGGCTTCGAGA
GGCGATAATCCTAGGCCATTGTAGGAAGCCTAGTGATGGAGCCATTTTTG
TGAACCTGCTTGGGGCTATTCTGGTTACTGTTACAATTATAAGAGGCGTA
TAATGGTCCAATGCATCATTGTATATCCGCTTTAACTACATGAATGCAAC
ACAACGCCTTCAGCTAGTTGAATAAGTCAGACTGTGGGAATTTTAACTAA
AAGCACTTTAAAGAAGTTATTGCCATACAAAATAATGCTTTAAGCTACAT
GTCCAAAATATCCCCGTTTTCTTACAAAAATCTTAGTATAATATTAAGCA
ATCTTGATTTTAAAATTCTTATTTGTTTCGGACATGGCTTGCTGATGACG
GTGATCCCATTTTCCTTTCCCCTCATGAGGTTTTGTCAGAACATGAACAA
ACGACGGGACATCCTTCTCCTTCGTAAGCACTGCTAGCTTCGTTGCCGCC
TCGTTAAAACATAAAATGAAACAATAGGTTTTGATGATCTACCTTGGGAA
TACCTTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTGTTGTTCTACTCTTCTCCAGTCTTTTATCTATATCATAACAA
AGATAACAGATGCGAAATCATCGTCATTTTTCTAAACTCCGATGAAATAA
TATCGAGTATATAGGATTGAGAGCATAGGATTCAAATTATGATATTCTTA
TGACACAGGCTCACAACTTTGGCATACCTTTTTTTTTTCAAGTCAATAAA
AAAACTAATTGGAATGACAAAAGTGATTCAAAAGTATACACACAGTTGAA
ATTCTCCATTTCAGCGTATAAAAAAAATTGAAAATAATTATTTTGTGACT
TGAGAGAAACTAGCCGTATGCGCAGCGTCGCACGCTGCATGTCCCAATCC
AGCAAATCACATCTAAAAAAAACCCAACGGAAAAAGGATTGCTGCTGATT
GATGATAAGATTTTGATTTTATAAAAGAAAGGAGAAAAAAGTTCAACGCC
ATGAAGAGGAGGCTTTGTAGAGCTTTGTTAGATTTTCGAAAACNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGTTGTAAACACACACG
TTTTAGCATATTAATATATAGATTTTCAAACTATCAAGCTATCTATCAAT
CATTTTACCTAAGTAATTCAAAGAAATAGCATTGTGATGGAATATCAACG
GATTTTTTATACCAATTTTAAAATACAGGCGGCTACAAAGACACCATGGA
AGATAGACGTCCAGTTATGATTTATCCCATGTGAAGGTGCAGTAGTGTAC
CAAGTATTGACCGTCGTCTAGGAGATCAGGACTAACTCCAACTCGGTGCT
GTGTTTCACTTAATGAAAAGTAAATGCTACTTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCAAAGAC
AGGCTACACAGATTTCTCGTTACATGCATGAATAATAAAGATATAGGAAT
TAGAGGATCTTGACGGATTTTACTCAGTAAGATTCTCCAGCTCCGGATTT
TCCATGGTAAGTCTAAACATTTTAGGGTAATATAACCACCTAGAAGCACT
TAATTCTGGTCTGTAAAATACACACAGCGATTTACATGTATTCTTGATTC
TTTGCATGTGTCAAACTAAAGAATAAGGTTCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCAACTTTGTTTAATGTCGAGATACAATGAG
AGACTTTGTCAAATATTTGAGTAATAGCTTGGAAGTTTCACCGTTTTTTG
GATCAAATCTTACCAAAAAAACATACTGATAAAGTGCTGACCAGACACAT
TTAGCCCTTATATATTTCCCAGGTACCTCTCGAATATAATATGAAGAATC
GAGTGGCTCTAAACCTTATTAAGCATCATTTTACTAATTCATTTCAGACA
AAAAGGCCAATTTTGAGTAGTCTAGCAAGCTAGAAGACTAATTCAGATAT
AGTAGAAATAAAACAAAAAGTAATGGAGGGAACAAATTTTAGTCGTCTAG
AAACCTTTGTGCAAGCCAAAAGCTTCATATTAATATTGCTTTGCTATTGT
TAATGAAAAAAAAATCTAGGGGGCTTGTTCGGAAAAAAACGGTTTGTTTT
GATTTCGTAAATCGATTTAATTGGTTTAGAAAAAACAATCGAGACGCACA
CCATTGGTCGAAATACATAAAAAGAGAAATCAGAACACACAACAATTTTC
TTTCTCGAAAAATTTTTCTCGTTTGTTTTAAACTAACTCCAAACAAAAGA
AAAGTGTCATGTCAATATTGCAATTATAATTTTTCTTCCCGCTCAAAAAA
AATTTTCTTTAAAAAAAAAGTGTGTTGATTTGTTGTGTGTTAAATTTTAT
TTTATTTTTCGTCTTTCATTTTGTTTTGAGAGTTTGTTGTTGCTTGATCA
AAAATTAATTTCTCCTTACCTTTCGCGCGCCAAATTCTTACGGAAGCACC
CCTGTCCGAGAAAAGCTTTCTTTTGTTTTCAGAAAAAACNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCCGTAACAATTATCGTATTATCATATAACGCCT
ATACTACTGTATTACACGCATTATAAACGACTCCAGTCTAAATTTTGAGA
AAAAAAGATCTTTTTTCGACGGTAAGGAAATTGTACTCTGGTCTGTAAAA
TACACATTTTTACTTCAAAATTTTTGAAAATTTGCACAAACAATTTTTAG
TGCCTTTTCTAAGAGCACATAAAGTTTTGATATGTTTAAAAGCATATTTC
TTGAGATATGACTAAAAGAATTGCCTCACTCCATGAAAGCCCGCCTACAA
CTGCAGCCAAACCTGAGAAAACGAAAGTGATTTATATCTCGAGATAGGAA
AGATTTCAGACCCAACTTTGTATCTCAAAATTAATCAGTATCAAATTTCC
GATCGATTGATATATGATATGCCTATATTCGGGTTGGAAGAATTTTCAGT
TTTGCCTACGGGGGTCACATGACCAAAAATCCGCCATTATGGATACCCAG
GTGAGAAATCCAGGTGGCCCAGAAGCTTAANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTTATGTGCATGTTTTGAGTGTATTTT
TAAGCAATCTAGAGCTCAAATTTTCAAAATTTCCCCCCTCGGGCCAAACC
ATGGTTGGCCCTTGCGGTGTCACTAAACTTCAGCCCCCCCAATATGAAAA
TGCTTCCTACGGCACTGCCTCAAGGAAACTAATTTTAGCGGGAACTAAAT
TTCGCGGTCGAAAAAAAATATGGAAGAAATGACTTTGGAATTAATTTTCG
CGGTTTTGCCCTATTTTGGAGATTATTTTTTATTTTCCGAGCGTTTTTCA
AATTTTTCGATGGAAAATGGTCGAATTTACGGAAATTAGTTCTTGCGAAA
ATTTGTTCCCTTAAGGTAACTGAAAGTTTGACAAAAGTGATGCTAAAATC
AGGTTTAAATTATATTTCTCTTTCTTTACAGACGAAACTTCACGAGAATG
AATGTGACATGCGCACACGTGCTACCATTGCAACCCATAATGCAACAGGA
TTGAAATTCCCGCTTGTTTTCAAAGCTTCGCATGTGGGTCAGACTGTCAT
CCATGCATTAGGGAAAAAGAAACAATGCAATGCGACAACATTGATACAGA
ATCTGAAAGATGAAAGAGATGCATTGAAGCAGAAAAAGAAAAGACAACCG
AAAACTGGATTGTACAAGTAAGGGATATTCATTCTCTCGAGACCTATTTC
ATATAACAGATGCGAAAGGTTGCTTGACATTTTTTTGTGAAGTGTAACGG
ATGTTTGTTGATTTGAGGAGTGAGCGAAAAATATCGAAGAAATTCTCAAA
TACCTATTCATGACATTTGACAACCAATAGGGGGCTTACCTGAATTTATC
AACAAGGACTCGTTTAGCCTGATTCGCAGACCTCTACAAAACCGCAGATA
GTATAAGAGCACGAATCCGTCAGGGGATGCCAGCAGCCTAGGATTTATGT
TTTAGTAGATCTTTATGATCTAATGAAGTGGAGCGTATAAAGGTAGAGCA
TTCGTCTACGGTGCGCAAGGTCGCGGGTTCAATCCTCGGTCTGATCATAA
CCAAAGACTTCGTACACTGTACAAAATGGTACTTAAGGACTCTCTGCTCC
TTACTCAGCAATTAAGAGAAGGAGTATTAAGAGTGGAACCCTACCTACCT
TCGGATAAATAACTACCGAAAGATGAGTGCTCAGGTCGCTGCCGTCTGTG
GTTGCAAGCCTTACTTATTATAGATCTCTAATCAATTTGTTTCACTTTCT
TCTGAAGGTTTATTGAACTGGTGGATGGACAGGAGATGATAGCTTCAGTT
CGAAATCAAGATGGTGACGTCATTTCGTTGCCTCCGATCACTAATGGTGA
AAAAACCAAGGTATTTTTTTTTTCCGATACTAGTATAGTACCTGTTTCAA
CTTGATAAAGGCAAACCGTCGAGACGTCGAATACAAAACTGTGTGTTTTT
AATGTTCACCTTTTCCTGCTTTAGATAGAGAGAGGAGAACCTATTTTTTT
TTCTCGATTCAGATTTTACCAAAATCTCAGTCAAAACTTCTGGAAATCAT
TTAAATTGATTTTTCCTAACTTCAAGATGTAAAAAAAGGTACACTTATGC
CTCGTTACGCAGCGTCCTTCCCCTCATGAGTTTTTGGACCTACTTCGGAG
TTCGTCCGTCCGTCTGTTACCAGCTTTTCTCTAGATTGGCTCATCAGTTT
TTTCTGATTTTTAGCACAAGGATGCAAAATGGCAATGCCCAAAATGTGAC
GGAACCCGATTTTCGAAAAAAAAAACTTTCCACCGGAAAAACTGTTTTTT
TTGTTTTTTTTCGAGATTTTATTTTTTGCTCAAAGATGCGTATTAACAAT
GCCCTAAACATGGCCGAGTCCGATTTTTGAGAAAAATTTTTTTCCGGCCG
AAAATGCCGGAAATATGCCGGAAATCGCTGTTTTTCTGGATTTTCATTGG
ATTTTTTTCTTAAAATTGCTTGTTTTTTCATTCAAAAACATTATTAATAG
CAATGCCCACCATCAAGCATGTTTTAATTTTCAAAAAATTTGATTTTTGA
AGCCGGAACTATTCAAAAATCGCCGGAACAACCTATTTTCGCCGGAAAGA
CAGTATTTCTTGAATTTAATGAGCTGTGCTTAATATTTTTTAATTAAATT
TTGCACACTGATGCAAAATGACAATACCTAAAATGTGACGGAGCCTGATT
TTCGAAAAACATTTTTTTCTGGCCGAAAATGCCGGAAAAACCGGTTTTGT
CTGATTTTTTGCAGAAAGATGCGTATTCGCAATACTAAAAACATGACCGA
GTTTGTTTTTTTTGAGAAAAATTCTTTTCCGGCTGAAAATGCCGGAAATA
TGCTGGTAATTACTGTTTTTGCAGATTGTCATTTGACTTTTCCCTCATTC
TTTGTTTTTTCACACAAAAACATTTGCCCACCATTAAGCATGATTAAATT
GTCAATAAAACTGATTTTTGCAACTGGAACTTGCTATTTCTATTTTTTCC
CTACTCCCCTTCCCTCTTCCCCCATCAACAATCAATTATAAAATTGAATG
TGTTATGCATTTTTGCAAAACGCTATATCGTCTGACTGATTGTTTTCATT
TTTCTCCTTATTGCTATCTAGCTTTCATCATCAGGTAGGTCCATTCAGCA
TGTTGCTTGTTGAAATATTTAGACTAGATTTCATAATTATTCCCTTTTTT
TCTTTTCCCTACAGATCGGTGCTTCAGTTGGTGATGTTTTCATTGAAATA
TCATCACCAGTCAGTATCGCACAATGCAAGTACGTTATGGAAGAGTTGAT
CAAGAAAATGTTCCAACAGAATTTCAACTCGGACATGGAAAGTGATGAAG
GGCTTTGGATTGAACCAATCAGAGTTGTGGATGAAAATGAAGATTTGAGA
ATAGTTTATCCCTCTAAAATTGATATCGATTTTTCAAATATTCCAGTCAA
ACGACTGTGAAATGATTTGATTGACCGGATTTAGACGATTCTACTACTTC
CCAGGTTTTCCATCATTGTCTTTGAAGATGATATCATGTATAAGGACTTT
GAACTTGGCTTTGAAGGATTGTACTTCAAAATAATTTGATGTTGCATCCT
TGACTAGTCAGTCATTTGGTTGATTTTCATATTTTTGGTCATCACTCAAA
AGGACTGTTGAATTCTGTCCAACATATATGTCATCAACTGCTGTTTCATT
CCACGAAGTTGTATTTGAAGTTTAGATTTTTTGAACGAATTTAAATATTT
CCGAAAACATAAATCTATAATTAAGTCGATCAAAGACTCTATAACTACCT
TTGTTAAATGCCCTAAATTCTACCAAGGAAATCGAGTGCTATTACGACAT
TTAGTGTAGTGCCAGTGTTGATAAACGTTGATCAAAACTCGCCTATCTGT
CGCCCATCAGTCAATTCCGTGACAAAATTATTTTTAAGCATCTCGTTAAG
TAAGTGTGCTCAATTAAAAGAAACATCTTTAATAAGTTTCTGTTTATCAG
TCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000325XLOC_000325Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000532-exon-sc0000002-1575043694:412927..413686TCONS_00000532-exon-sc0000002-1575043694:412927..413686Clytia hemisphaericaexon
TCONS_00000532-exon-sc0000002-1575043694:403670..403905TCONS_00000532-exon-sc0000002-1575043694:403670..403905Clytia hemisphaericaexon
TCONS_00000532-exon-sc0000002-1575043694:402977..403079TCONS_00000532-exon-sc0000002-1575043694:402977..403079Clytia hemisphaericaexon
TCONS_00000532-exon-sc0000002-1575043694:400832..401622TCONS_00000532-exon-sc0000002-1575043694:400832..401622Clytia hemisphaericaexon
TCONS_00000532-exon-sc0000002-1510915933:412927..413686TCONS_00000532-exon-sc0000002-1510915933:412927..413686Clytia hemisphaericaexon
TCONS_00000532-exon-sc0000002-1510915933:403670..403905TCONS_00000532-exon-sc0000002-1510915933:403670..403905Clytia hemisphaericaexon
TCONS_00000532-exon-sc0000002-1510915933:402977..403079TCONS_00000532-exon-sc0000002-1510915933:402977..403079Clytia hemisphaericaexon
TCONS_00000532-exon-sc0000002-1510915933:400832..401622TCONS_00000532-exon-sc0000002-1510915933:400832..401622Clytia hemisphaericaexon
TCONS_00000532-exon-sc0000002-1491911889:412927..413686TCONS_00000532-exon-sc0000002-1491911889:412927..413686Clytia hemisphaericaexon
TCONS_00000532-exon-sc0000002-1491911889:403670..403905TCONS_00000532-exon-sc0000002-1491911889:403670..403905Clytia hemisphaericaexon
TCONS_00000532-exon-sc0000002-1491911889:402977..403079TCONS_00000532-exon-sc0000002-1491911889:402977..403079Clytia hemisphaericaexon
TCONS_00000532-exon-sc0000002-1491911889:400832..401622TCONS_00000532-exon-sc0000002-1491911889:400832..401622Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:400832..413686 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	2.88475	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10.0223	4.69116	0	0	0	0
Blast
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BLAST of TCONS_00000532 vs. Swiss-Prot (Human)
Match: LRC47 (Leucine-rich repeat-containing protein 47 OS=Homo sapiens GN=LRRC47 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.121e-62
Identity = 169/504 (33.53%), Postives = 252/504 (50.00%), Query Frame = 2 
Query:    2 LTNLINLALHRNSI-EKVGDFFNHLPKLKFFDMSFNKLTSLPEQLNLGT--------VHTLNLSNNELASL-GDLS-GAVNXXXXXXXXXXXXXXPTGLV---TLKHLLEVHASNNLINTLPDDLHTFPALKLFDVSENKLKEVPHSMSQCQRLKTLKLEGNPLKDNRLRKMTTQCNTRAILEYIAKQSXXXXXXXXXXXXXXXNQPVKEEAEENVRRIVITPNTDDEKRVICDAS-----------------------VKDVRPYLCCTVIKNLDLSDEIVFKNFLSLQTKLHENECDMRTRATIATHNATGLKFPLVFKASHVGQTVIHALGKKKQCNATTLIQNLKDERDALKQKKKRQPKTGLYKFIELVDGQEMIASVRNQDGDVISLPPITNGEKTKIGASVGDVFIEISSPVSIAQCKYVMEELIKKMFQ----------QNFNSDMESD-----------------EG---LWIEPIRVVDENEDLRIVYPSKIDI 1312
            L  L +L L RN++   +      LP L+  D+S N L +LP    LG         + +LNLS N L  L  DL+  A  L  L++  N L+  P  L     L  L E+ A++N +  L  D+    +LK  D+S N+L E+P  ++ C +LK +   GN L+D RL KM + C TR+ILEY+       G   GK   + +    +E   +   R       D E++ + DA                        V+DVRPY+   V++ +DL      K FL+ QTKLHE+ C+ RT AT+ATH    +K PL++ A       I  LG+K +  A  L++ L+ E +  +++KKRQ  +GL++++ L+DG E    + + DGDVIS PPITN EKTK+  +  D+F+E++S  S+  CK VM+ LI KM +          +   SD E+D                 +G   L +E +RVVD    L++VYPSK D+
Sbjct:   74 LPQLHSLVLRRNALGPGLSPELGPLPALRVLDLSGNALEALPPGQGLGPAEPPGLPQLQSLNLSGNRLRELPADLARCAPRLQSLNLTGNCLDSFPAELFRPGALPLLSELAAADNCLRELSPDIAHLASLKTLDLSNNQLSEIPAELADCPKLKEINFRGNKLRDKRLEKMVSGCQTRSILEYL----RVGGRGGGKGKGRAEGSEKEESRRKRRERKQRREGGDGEEQDVGDAGRLLLRVLHVSENPVPLTVRVSPEVRDVRPYIVGAVVRGMDLQPGNALKRFLTSQTKLHEDLCEKRTAATLATHELRAVKGPLLYCARPPQDLKIVPLGRK-EAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLDGNENYPCLVDADGDVISFPPITNSEKTKVKKTTSDLFLEVTSATSLQICKDVMDALILKMAEMKKYTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGKDGPSLLVVEQVRVVDLEGSLKVVYPSKADL 572
The following BLAST results are available for this feature:
BLAST of TCONS_00000532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC471.121e-6233.53Leucine-rich repeat-containing protein 47 OS=Homo ... [more]
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