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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000525 ID=TCONS_00000525|Name=TCONS_00000525|organism=Clytia hemisphaerica|type=transcript|length=3806bpRun BLAST on NCBI transcript from alignment at sc0000002:268592..357410- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000525 ID=TCONS_00000525|Name=TCONS_00000525|organism=Clytia hemisphaerica|type=transcript|length=88819bp|location=Sequence derived from alignment at sc0000002:268592..357410- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00000525 vs. Swiss-Prot (Human)
Match: CAHD1 (VWFA and cache domain-containing protein 1 OS=Homo sapiens GN=CACHD1 PE=2 SV=2) HSP 1 Score: 134.035 bits (336), Expect = 1.887e-31 Identity = 193/884 (21.83%), Postives = 350/884 (39.59%), Query Frame = 3
Query: 270 KGRHFLIVLDYSEKIQNT-IAIMRKVATTLLKLVTSKDMISVKFYHEDNLVPGDNKADCL------KISSKATPYLKDKILKEIETKQPKGDAASYSKIFRESFTALKNEHSN-----QTEKHFIFVTSGYYIDSWSE------VQTVFEEGR--EDFGCDLSFSLLLLYKDGDWGTTTYNNNKNLKGVGCNVKGRDNFMEFELGKDNNHFTINSKISAILSSAKNF-----NDFNDKVHYIMPISDRFGRGTTIDACKAVVDKSSSSQNPMKGAVCLSFLTNEFIREE---WSQTENSYWFLIKKNGQTFIHPKFGQPLGSDELSRTVSILQIESSQSFKDEVYDDMISGNSGTKILLQVIAPKGRGPF------GASSHNTTLTYTWRAVPKSDFVLAIVTSSGFYDSK-LKITDQGGAEN--YHRIDLWNSTDYDGHLCKYSGTQVAVKDLAVIKFPAYAFLRPSVYYKLEKEIELVQQLKHLCTPGSTTLPPAGFFRSIDSFKNLCLSAKATHGMNAFWNKDKSEETVN--ILSRYVGMENGFFRAYPGHLMNPSYDPRARPWYRLMIAQKG-ITLTTPYPDAFTGENVMTXXXXXXXXXXXXXXAGNIA---MDFKPLYFKELLERSIKECASGA-----CVVIDRNGFVVYQSSFMEENENSTLENQHIVKMHGRLAKTMIENGVMI-KNYCLEFRNNVTVKEWF---YSLDHVIEAKSYSKGCLKDYHVVPIIDSNLLLLYINDRCDVKEKCTCREPINGERFGYCSNDISETNCECPCIQPV---TCLSDLRITPGRLECNP--EDKRKTDFSEKWFKGNISELTLCFDPECKKRDTWDNCESFKPACNWCFKFPNG-THVADEKKHCDYSDEECF 2747
+ +H +++LD+ + +T + I + A +L + D ISV L D C S AT K K+ + + + ++ F+++F +++ ++N T+ I++++G SE +Q + EE + L+++L+ DG G ++L G + M + K + + +++S + ++ F N D+ + +P SD G G + V K N + G V + + +I E+ + + SY FLI G T +HP +P E I+ E+ F + V +++S G++I+ + G ++N ++Y W+ V + F+L IV K LK + + YHR+DL H Q+A + I A +F P + + +V+ + + + G S+ + AT + W ++N I+ RY+ NG R YPG LM+ ++DP R WY +A G I+LT PY D V+T+ + + +A +DF YF ++L + C C +++ G++V + ++ ++ +E QHI +A ++ + + KN C F + TV+ ++ SL + + C K Y + I +N + +N+ CD C C +R + + + CECPC P+ C +L R NP E ++ G L C + C +R +C C WC +G TH+ +K +C +ECF
Sbjct: 225 QSKHIVVILDHGASVTDTQLQIAKDAAQVILSAIDEHDKISV-------LTVADTVRTCSLDQCYKTFLSPATSETKRKMSTFVSSVKSSDSPTQHAVGFQKAFQLIRSTNNNTKFQANTDMVIIYLSAGITSKDSSEEDKKATLQVINEENSFLNNSVMILTYALM---NDGVTGLKELAFLRDLAEQNSGKYGVPDRMALPVIKGS--MMVLNQLSNLETTVGRFYTNLPNRMIDEAVFSLPFSDEMGDGLIM-----TVSKPCYFGNLLLGIVGVD-VNLAYILEDVTYYQDSLASYTFLIDDKGYTLMHPSLTRPYLLSEPPLHTDIIHYENIPKF-ELVRQNILSLPLGSQIIAVPVNSSLSWHINKLRETGKEAYN--VSYAWKMVQDTSFILCIVVIQPEIPVKQLKNLNTVPSSKLLYHRLDLLGQPSACLHF-----KQLATLESPTIMLSAGSFSSPYEHLSQPETKRMVEHYTAYLSDNTRLIANPGLKFSVRN------EVMATSHVTDEWMTQMEMSSLNTYIVRRYIATPNGVLRIYPGSLMDKAFDPTRRQWYLHAVANPGLISLTGPYLDVGGAGYVVTISHTIHSSSTQLSSGHTVAVMGIDFTLRYFYKVLMDLLPVCNQDGGNKIRCFIMEDRGYLVAHPTLIDPKGHAPVEQQHITHKEPLVANDILNHPNFVKKNLCNSFSDR-TVQRFYKFNTSLAGDLTNLVHGSHCSK-YRLARIPGTNAFVGIVNETCDSLAFCACSMV---DRLCLNCHRMEQNECECPCECPLEVNECTGNLTNAENR---NPSCEVHQEPVTYTAIDPGLQDALHQCVNSRCSQRLESGDCFGVL-DCEWCMVDSDGKTHL--DKPYC-APQKECF 1064 The following BLAST results are available for this feature:
BLAST of TCONS_00000525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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