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TCONS_00000516 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000516
Unique NameTCONS_00000516
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000516 ID=TCONS_00000516|Name=TCONS_00000516|organism=Clytia hemisphaerica|type=transcript|length=1652bp
gaaaaaaattggaaagtcTCTGAAACCTTTGCCATATTGAACCAGTAACA
TAGACAATAATAGTGAGATAAgatgatcaaatcaaaattctcaaaataga
aaatatttcgGAGAGAGTATCGCCTATCtatagattttgaaatttttttt
caaaataataattatctattctacaaaaatcaaaataactacAATAACAT
GACTAGTAAAATAAAAGGATTCGAAAATAATTAGCTATATACTAAAATAC
GCCTATATTACAAATATATTAACCTNTAAAAGGATTCGAAAATAATTAGC
TATATACTAAAATACGCCTATATTACAAATATATTAACCTAACTTTCCTA
ACACAAAATGCAAACATTTCTTGAAAATCAATTATCCATTTTATATCTAA
CTCCAGCTGAAACTTAACATTTTCATAGTACGTTCAAGCTCATTTGCAGC
CGGGTTAAATAAATCTGAAAGGAGCAGGCTACAATAATGTTAAGCATAGT
TAAAAGTTTTCcctaaagaagaaaattatatcTCTGAAGTGTGTTTTTAC
TGAAGAAATAAATTATTATTCaagtctgaaaaaaaatcaacgcaaaatgg
cgaaaatactCAAATTTTATGTACAAAATACGGCTTATATCATAATTTAT
CATAATGTACAAATGCTGAACAATTTACAAAAATGCTGCAAAATGTTCCA
TTGAGCAGTCAAAAAGTGTACAACGCGACCGACGACCGACGTATTAGATG
AAACTGTAccaaaagtacaaaaaataTGCAAGtaaaaatatcatatttac
taTACGGTAAAACAATCTAAAAATTTGTTTGGTGTATACGTATATAGACC
CATCATTTCAATTAATAAGTCTAAATTGTCAATGACATCCAAAATCAGAC
TGTCATGTATATTGAAAAAActaaatatttccaaaaaatcaacaaattca
TTGCTTAAACTGATGTTCCACGTTGATATTCAGGAGGAGTTTCCTCTCCT
TCTTCGattgttaaattttcaatttgaaggTTCTGGTAATTGTGGTAATC
AAAATGAAAAGATCTCCTATCGTGCTCCCTTTCACTTGGTGAAGCAAGAG
TGTGTCTTCGAATCCTATTCAAAACAGATACTTTCTGTAAAGTGTATTTA
GTTGCAAGTGCATCACTTAAACGTGTTAGTTCAGTAGCTACTATGGATGC
CTCTAATGTTAGAGGAGCTGATCTAGAACGTCTCCTGGGCATTATATCAT
TAACAGATAACTCTGATGAAGATTTGACCATGTCGTttgttgatttatat
ttctcatCTTGTAATCGACCAGCAGCGCTTTTGCAAGGTTGTAAAGGCCG
ATGTGCATTCAAGATTTTATTGACCGGCTTCTCACTTGCCTCTTCACTGT
CTTTGTTTATTGtagccatttttgttttgttggtatAATTCTCCTTTTTT
CTCCTTCCCTGTTTGATATACCAGGGAATAGGAGAACCTTTTATACAATT
TTTGCAAtttcgtttttttattttttgttacatttctgaaagtataaaaa
ataaagGTGACAGCATAAGATGGGTTTTTCGACATTAAACCAGTTTCAGG
CAGtcagaaaatgagaaaaatagtATAAGATATAGGACAACCTCTGCTCA
AT
Run BLAST on NCBI

transcript from alignment at sc0000002:263272..265673-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000516 ID=TCONS_00000516|Name=TCONS_00000516|organism=Clytia hemisphaerica|type=transcript|length=2402bp|location=Sequence derived from alignment at sc0000002:263272..265673- (Clytia hemisphaerica)
GAAAAAAATTGGAAAGTCTCTGAAACCTTTGCCATATTGAACCAGTAACA TAGACAATAATAGTGAGATAAGATGATCAAATCAAAATTCTCAAAATAGA AAATATTTCGGAGAGAGTATCGCCTATCTATAGATTTTGAAATTTTTTTT CAAAATAATAATTATCTATTCTACAAAAATCAAAATAACTACAATAACAT GACTAGTAAAATAAAAGGATTCGAAAATAATTAGCTATATACTAAAATAC GCCTATATTACAAATATATTAACCTNTAAAAGGATTCGAAAATAATTAGC TATATACTAAAATACGCCTATATTACAAATATATTAACCTAACTTTCCTA ACACAAAATGCAAACATTTCTTGAAAATCAATTATCCATTTTATATCTAA CTCCAGCTGAAACTTAACATTTTCATAGTACGTTCAAGCTCATTTGCAGC CGGGTTAAATAAATCTGAAAGGAGCAGGCTACAATAATGTTAAGCATAGT TAAAAGTTTTCCCTAAAGAAGAAAATTATATCTCTGAAGTGTGTTTTTAC TGAAGAAATAAATTATTATTCAAGTCTGAAAAAAAATCAACGCAAAATGG CGAAAATACTCAAATTTTATGTACAAAATACGGCTTATATCATAATTTAT CATAATGTACAAATGCTGAACAATTTACAAAAATGCTGCAAAATGTTCCA TTGAGCAGTCAAAAAGTGTACAACGCGACCGACGACCGACGTATTAGATG AAACTGTACCAAAAGTACAAAAAATATGCAAGTAAAAATATCATATTTAC TATACGGTAAAACAATCTAAAAATTTGTTTGGTGTATACGTATATAGACC CATCATTTCAATTAATAATAACAGTCTAAATTGTCAATGACATCCAAAAT CAGACTGTCATGTATATTGAAAAAACTAAATATTTCCAAAAAATCAACAA ATTCATTGCTTAAACTGATGTTCCACGTTGATATTCAGGAGGAGTTTCCT CTCCTTCTTCGATTGTTAAATTTTCAATTTGAAGGTTCTGGNAGCTATAT ACTAAAATACGCCTATATTACAAATATATTAACCTAACTTTCCTAACACA AAATGCAAACATTTCTTGAAAATCAATTATCCATTTTATATCTAACTCCA GCTGAAACTTAACATTTTCATAGTACGTTCAAGCTCATTTGCAGCCGGGT TAAATAAATCTGAAAGGAGCAGGCTACAATAATGTTAAGCATAGTTAAAA GTTTTCCCTAAAGAAGAAAATTATATCTCTGAAGTGTGTTTTTACTGAAG AAATAAATTATTATTCAAGTCTGAAAAAAAATCAACGCAAAATGGCGAAA ATACTCAAATTTTATGTACAAAATACGGCTTATATCATAATTTATCATAA TGTACAAATGCTGAACAATTTACAAAAATGCTGCAAAATGTTCCATTGAG CAGTCAAAAAGTGTACAACGCGACCGACGACCGACGTATTAGATGAAACT GTACCAAAAGTACAAAAAATATGCAAGTAAAAATATCATATTTACTATAC GGTAAAACAATCTAAAAATTTGTTTGGTGTATACGTATATAGACCCATCA TTTCAATTAATAATAACAGTCTAAATTGTCAATGACATCCAAAATCAGAC TGTCATGTATATTGAAAAAACTAAATATTTCCAAAAAATCAACAAATTCA TTGCTTAAACTGATGTTCCACGTTGATATTCAGGAGGAGTTTCCTCTCCT TCTTCGATTGTTAAATTTTCAATTTGAAGGTTCTGGTAATTGTGGTAATC AAAATGAAAAGATCTCCTATCGTGCTCCCTTTCACTTGGTGAAGCAAGAG TGTGTCTTCGAATCCTATTCAAAACAGATACTTTCTGTAAAGTGTATTTA GTTGCAAGTGCATCACTTAAACGTGTTAGTTCAGTAGCTACTATGGATGC CTCTAATGTTAGAGGAGCTGATCTAGAACGTCTCCTGGGCATTATATCAT TAACAGATAACTCTGATGAAGATTTGACCATGTCGTTTGTTGATTTATAT TTCTCATCTTGTAATCGACCAGCAGCGCTTTTGCAAGGTTGTAAAGGCCG ATGTGCATTCAAGATTTTATTGACCGGCTTCTCACTTGCCTCTTCACTGT CTTTGTTTATTGTAGCCATTTTTGTTTTGTTGGTATAATTCTCCTTTTTT CTCCTTCCCTGTTTGATATACCAGGGAATAGGAGAACCTTTTATACAATT TTTGCAATTTCGTTTTTTTATTTTTTGTTACATTTCTGAAAGTATAAAAA ATAAAGGTGACAGCATAAGATGGGTTTTTCGACATTAAACCAGTTTCAGG CAGTCAGAAAATGAGAAAAATAGTATAAGATATAGGACAACCTCTGCTCA AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000320XLOC_000320Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000516-exon-sc0000002-1575043694:264807..265673TCONS_00000516-exon-sc0000002-1575043694:264807..265673Clytia hemisphaericaexon
TCONS_00000516-exon-sc0000002-1575043694:263272..264056TCONS_00000516-exon-sc0000002-1575043694:263272..264056Clytia hemisphaericaexon
TCONS_00000516-exon-sc0000002-1510915933:264807..265673TCONS_00000516-exon-sc0000002-1510915933:264807..265673Clytia hemisphaericaexon
TCONS_00000516-exon-sc0000002-1510915933:263272..264056TCONS_00000516-exon-sc0000002-1510915933:263272..264056Clytia hemisphaericaexon
TCONS_00000516-exon-sc0000002-1491911889:264807..265673TCONS_00000516-exon-sc0000002-1491911889:264807..265673Clytia hemisphaericaexon
TCONS_00000516-exon-sc0000002-1491911889:263272..264056TCONS_00000516-exon-sc0000002-1491911889:263272..264056Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:263272..265673 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.723245 0.595623 0.669506 0 2.16095 1.94657 3.62179 1.92436 3.0915 3.408 3.4247 3.03994 1.21046 0.984204 0.917582 1.63698 1.47063 2.59032 2.26364 3.24509 1.69778 3.76635 0.830113 0.715505 2.10197 2.54791 3.19398 0 1.81044 0.919079
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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