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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000516 ID=TCONS_00000516|Name=TCONS_00000516|organism=Clytia hemisphaerica|type=transcript|length=1652bp
gaaaaaaattggaaagtcTCTGAAACCTTTGCCATATTGAACCAGTAACA
TAGACAATAATAGTGAGATAAgatgatcaaatcaaaattctcaaaataga
aaatatttcgGAGAGAGTATCGCCTATCtatagattttgaaatttttttt
caaaataataattatctattctacaaaaatcaaaataactacAATAACAT
GACTAGTAAAATAAAAGGATTCGAAAATAATTAGCTATATACTAAAATAC
GCCTATATTACAAATATATTAACCTNTAAAAGGATTCGAAAATAATTAGC
TATATACTAAAATACGCCTATATTACAAATATATTAACCTAACTTTCCTA
ACACAAAATGCAAACATTTCTTGAAAATCAATTATCCATTTTATATCTAA
CTCCAGCTGAAACTTAACATTTTCATAGTACGTTCAAGCTCATTTGCAGC
CGGGTTAAATAAATCTGAAAGGAGCAGGCTACAATAATGTTAAGCATAGT
TAAAAGTTTTCcctaaagaagaaaattatatcTCTGAAGTGTGTTTTTAC
TGAAGAAATAAATTATTATTCaagtctgaaaaaaaatcaacgcaaaatgg
cgaaaatactCAAATTTTATGTACAAAATACGGCTTATATCATAATTTAT
CATAATGTACAAATGCTGAACAATTTACAAAAATGCTGCAAAATGTTCCA
TTGAGCAGTCAAAAAGTGTACAACGCGACCGACGACCGACGTATTAGATG
AAACTGTAccaaaagtacaaaaaataTGCAAGtaaaaatatcatatttac
taTACGGTAAAACAATCTAAAAATTTGTTTGGTGTATACGTATATAGACC
CATCATTTCAATTAATAAGTCTAAATTGTCAATGACATCCAAAATCAGAC
TGTCATGTATATTGAAAAAActaaatatttccaaaaaatcaacaaattca
TTGCTTAAACTGATGTTCCACGTTGATATTCAGGAGGAGTTTCCTCTCCT
TCTTCGattgttaaattttcaatttgaaggTTCTGGTAATTGTGGTAATC
AAAATGAAAAGATCTCCTATCGTGCTCCCTTTCACTTGGTGAAGCAAGAG
TGTGTCTTCGAATCCTATTCAAAACAGATACTTTCTGTAAAGTGTATTTA
GTTGCAAGTGCATCACTTAAACGTGTTAGTTCAGTAGCTACTATGGATGC
CTCTAATGTTAGAGGAGCTGATCTAGAACGTCTCCTGGGCATTATATCAT
TAACAGATAACTCTGATGAAGATTTGACCATGTCGTttgttgatttatat
ttctcatCTTGTAATCGACCAGCAGCGCTTTTGCAAGGTTGTAAAGGCCG
ATGTGCATTCAAGATTTTATTGACCGGCTTCTCACTTGCCTCTTCACTGT
CTTTGTTTATTGtagccatttttgttttgttggtatAATTCTCCTTTTTT
CTCCTTCCCTGTTTGATATACCAGGGAATAGGAGAACCTTTTATACAATT
TTTGCAAtttcgtttttttattttttgttacatttctgaaagtataaaaa
ataaagGTGACAGCATAAGATGGGTTTTTCGACATTAAACCAGTTTCAGG
CAGtcagaaaatgagaaaaatagtATAAGATATAGGACAACCTCTGCTCA
AT Run BLAST on NCBI transcript from alignment at sc0000002:263272..265673- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000516 ID=TCONS_00000516|Name=TCONS_00000516|organism=Clytia hemisphaerica|type=transcript|length=2402bp|location=Sequence derived from alignment at sc0000002:263272..265673- (Clytia hemisphaerica)
GAAAAAAATTGGAAAGTCTCTGAAACCTTTGCCATATTGAACCAGTAACA
TAGACAATAATAGTGAGATAAGATGATCAAATCAAAATTCTCAAAATAGA
AAATATTTCGGAGAGAGTATCGCCTATCTATAGATTTTGAAATTTTTTTT
CAAAATAATAATTATCTATTCTACAAAAATCAAAATAACTACAATAACAT
GACTAGTAAAATAAAAGGATTCGAAAATAATTAGCTATATACTAAAATAC
GCCTATATTACAAATATATTAACCTNTAAAAGGATTCGAAAATAATTAGC
TATATACTAAAATACGCCTATATTACAAATATATTAACCTAACTTTCCTA
ACACAAAATGCAAACATTTCTTGAAAATCAATTATCCATTTTATATCTAA
CTCCAGCTGAAACTTAACATTTTCATAGTACGTTCAAGCTCATTTGCAGC
CGGGTTAAATAAATCTGAAAGGAGCAGGCTACAATAATGTTAAGCATAGT
TAAAAGTTTTCCCTAAAGAAGAAAATTATATCTCTGAAGTGTGTTTTTAC
TGAAGAAATAAATTATTATTCAAGTCTGAAAAAAAATCAACGCAAAATGG
CGAAAATACTCAAATTTTATGTACAAAATACGGCTTATATCATAATTTAT
CATAATGTACAAATGCTGAACAATTTACAAAAATGCTGCAAAATGTTCCA
TTGAGCAGTCAAAAAGTGTACAACGCGACCGACGACCGACGTATTAGATG
AAACTGTACCAAAAGTACAAAAAATATGCAAGTAAAAATATCATATTTAC
TATACGGTAAAACAATCTAAAAATTTGTTTGGTGTATACGTATATAGACC
CATCATTTCAATTAATAATAACAGTCTAAATTGTCAATGACATCCAAAAT
CAGACTGTCATGTATATTGAAAAAACTAAATATTTCCAAAAAATCAACAA
ATTCATTGCTTAAACTGATGTTCCACGTTGATATTCAGGAGGAGTTTCCT
CTCCTTCTTCGATTGTTAAATTTTCAATTTGAAGGTTCTGGNAGCTATAT
ACTAAAATACGCCTATATTACAAATATATTAACCTAACTTTCCTAACACA
AAATGCAAACATTTCTTGAAAATCAATTATCCATTTTATATCTAACTCCA
GCTGAAACTTAACATTTTCATAGTACGTTCAAGCTCATTTGCAGCCGGGT
TAAATAAATCTGAAAGGAGCAGGCTACAATAATGTTAAGCATAGTTAAAA
GTTTTCCCTAAAGAAGAAAATTATATCTCTGAAGTGTGTTTTTACTGAAG
AAATAAATTATTATTCAAGTCTGAAAAAAAATCAACGCAAAATGGCGAAA
ATACTCAAATTTTATGTACAAAATACGGCTTATATCATAATTTATCATAA
TGTACAAATGCTGAACAATTTACAAAAATGCTGCAAAATGTTCCATTGAG
CAGTCAAAAAGTGTACAACGCGACCGACGACCGACGTATTAGATGAAACT
GTACCAAAAGTACAAAAAATATGCAAGTAAAAATATCATATTTACTATAC
GGTAAAACAATCTAAAAATTTGTTTGGTGTATACGTATATAGACCCATCA
TTTCAATTAATAATAACAGTCTAAATTGTCAATGACATCCAAAATCAGAC
TGTCATGTATATTGAAAAAACTAAATATTTCCAAAAAATCAACAAATTCA
TTGCTTAAACTGATGTTCCACGTTGATATTCAGGAGGAGTTTCCTCTCCT
TCTTCGATTGTTAAATTTTCAATTTGAAGGTTCTGGTAATTGTGGTAATC
AAAATGAAAAGATCTCCTATCGTGCTCCCTTTCACTTGGTGAAGCAAGAG
TGTGTCTTCGAATCCTATTCAAAACAGATACTTTCTGTAAAGTGTATTTA
GTTGCAAGTGCATCACTTAAACGTGTTAGTTCAGTAGCTACTATGGATGC
CTCTAATGTTAGAGGAGCTGATCTAGAACGTCTCCTGGGCATTATATCAT
TAACAGATAACTCTGATGAAGATTTGACCATGTCGTTTGTTGATTTATAT
TTCTCATCTTGTAATCGACCAGCAGCGCTTTTGCAAGGTTGTAAAGGCCG
ATGTGCATTCAAGATTTTATTGACCGGCTTCTCACTTGCCTCTTCACTGT
CTTTGTTTATTGTAGCCATTTTTGTTTTGTTGGTATAATTCTCCTTTTTT
CTCCTTCCCTGTTTGATATACCAGGGAATAGGAGAACCTTTTATACAATT
TTTGCAATTTCGTTTTTTTATTTTTTGTTACATTTCTGAAAGTATAAAAA
ATAAAGGTGACAGCATAAGATGGGTTTTTCGACATTAAACCAGTTTCAGG
CAGTCAGAAAATGAGAAAAATAGTATAAGATATAGGACAACCTCTGCTCA
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000516-exon-sc0000002-1575043694:264807..265673 | TCONS_00000516-exon-sc0000002-1575043694:264807..265673 | Clytia hemisphaerica | exon |
| TCONS_00000516-exon-sc0000002-1575043694:263272..264056 | TCONS_00000516-exon-sc0000002-1575043694:263272..264056 | Clytia hemisphaerica | exon |
| TCONS_00000516-exon-sc0000002-1510915933:264807..265673 | TCONS_00000516-exon-sc0000002-1510915933:264807..265673 | Clytia hemisphaerica | exon |
| TCONS_00000516-exon-sc0000002-1510915933:263272..264056 | TCONS_00000516-exon-sc0000002-1510915933:263272..264056 | Clytia hemisphaerica | exon |
| TCONS_00000516-exon-sc0000002-1491911889:264807..265673 | TCONS_00000516-exon-sc0000002-1491911889:264807..265673 | Clytia hemisphaerica | exon |
| TCONS_00000516-exon-sc0000002-1491911889:263272..264056 | TCONS_00000516-exon-sc0000002-1491911889:263272..264056 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:263272..265673 - |
Blast
The following BLAST results are available for this feature:
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