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TCONS_00000511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000511
Unique NameTCONS_00000511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2042

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000511 ID=TCONS_00000511|Name=TCONS_00000511|organism=Clytia hemisphaerica|type=transcript|length=2042bp
CTTATTGCAGGTGTATTTAAAGGTTTCAAACAAGTGCATTTGACTGAAGt
ctgttaaccaatcaaattcaaGAAAGCTTTACAACCAGCCAatcagaatg
ttgaaaaagataACAAGCGAGCCAATCATATTTCTTTATGCCACCGTGTA
CATGATCAACTTGTCCATTCTGCCACAGTTggttcttcaaaaagtttgtt
tacaaaaacattatggaaattcaactctgtgtggtGAAAAATCTGGGTTG
GCAATCACACAAGAGATGAAGAAGGAAACGTCTCATTGGTGGTTCGCTAT
CCTTGCTTCATCTCAAATTCCCGCCATTTTTACCGTTCTCATCTGGGGAC
CAATCAGCGACGCGATCGGTCGGAAGAAAGCAATGTTGTTGATTCCAATA
ATGAGTATTTTGCAGAATATTGTTTTCCTGTTATGCTCCTATTATATCAA
TTCTTCGATCATTTATTTGTGTTTTGGAATGTTTTTGGCGTGTTTTTTTG
GAGAATTTCCAGGAGTACTAGCTTTATCCTGTGCATTCATTGCAGATGTT
ACAGCGGGTCTAAAAGCTAAATCTCGAGTCACTAGAATGGCGCTTATAGA
TTGTGCTGTTAATCTAGCTGGGCTACCTGCAGGGCTTTTCGCTGGTCAGC
TTTTAAAACATCTAGGATTCACAGCTGTCTTTGGACTTTCGATCGGAATC
AATCTGTTGTTGTTAGCTTACATCGTTTTTCTTTTACCCGACCCAAGAGC
ATTACAAAAGGTTCCCAAAGGCAAAGAGCTCAAAGAATCAACATCTTCGG
AAAACAAGAAACTTGTTCCTGCGTCAGCGACGAATGAAAGCATCTCAGAT
AACTCAAGCAATGTTTCCAGTAACATTGACAGAGTGCCCGACTCTTCAAA
CGATAGCTCCTCAGAGTCTGCAAGTGAATCGCCACCTCAGTTAGACAAGA
AACCAATCACTTGTGATCTCTTTAAACCGCACAAGCAAATCTACCTTGTT
TACAATCTATTATCGTGCAAAGAAAGGAGACATTTAATTCTACCACCCCT
GTTTGCATTCAGTTTTGTTATTTACGCTTTTATTGGAGAACTAACCATTA
CGTCATTATATCTCAAAAGTGATCCTCTAGCCTTCACTCCAGNTTATTGG
AGAACTAACCATTACGTCATTATATCTCAAAAGTGATCCACTAGCCTTCA
CTCCAGACTACATCGGATATTATTACGCCTCACAGGCTGTTATTCGTAGC
CTTGGAATTCTCCTGGTGACACAATTCGCTTATCGAGTTTTAAAAGCGTC
AGATGTTAACGTTTTATTATTTGGGATTGCTACACAAATTATGTGTTATG
TTCTTATCGGGTTTTCTCGGGATACGTTATCGGTATTCATGGCAAATATT
ATCGGTTTCGGTTTAACAGTCGCGCTATCGTTGTCTAGaagctatacatc
aaaacatgTACCACCGGAGCAAGTTGGTACCCTGATGGCGGCATTCGAAT
CTATCGACGCCCTATCATTTACGACAAACTTGATGTCGATTGAAGTTTAC
AATGCAACTCTAGATCGTTATTCAGGAGCTGTATTTCTCTTCTTAGCTGG
CTGCTCAAGCGTTGGTTTTTGTATAACGGTGgccaacaaaatttatttaa
agcGAATACGAAATGAACTGAACAGCGAAATGAATGAAGCtcttaatgaa
aattttagaactTCGGATGCTTGATATATATTTATTCTTAAACTTGACTT
TTTGTTTTAATCTGCatataatatttttgttttgtgaagCCTAAATTTGT
GATAATATTCTGATTTTTAATTTAGCTGTGATATTCGAATAGTTTATTCT
TATTGAAATGTGACGAATTGTCTGactaggctgagaatatagcctggaag
ccatcATACctctccaaaatcgaaatatccgaataaaaaatgtcattcta
ggtcgaactttaaattctgcaaAGCGCTAAAATACCCAGAATCGCTAGCA
TATTTTGACCTGAATTGTAGATCTTGACTAGATAGATTTCCA
Run BLAST on NCBI

protein sequence of TCONS_00000511-protein

>TCONS_00000511-protein ID=TCONS_00000511-protein|Name=TCONS_00000511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
MLKKITSEPIIFLYATVYMINLSILPQLVLQKVCLQKHYGNSTLCGEKSG
LAITQEMKKETSHWWFAILASSQIPAIFTVLIWGPISDAIGRKKAMLLIP
IMSILQNIVFLLCSYYINSSIIYLCFGMFLACFFGEFPGVLALSCAFIAD
VTAGLKAKSRVTRMALIDCAVNLAGLPAGLFAGQLLKHLGFTAVFGLSIG
INLLLLAYIVFLLPDPRALQKVPKGKELKESTSSENKKLVPASATNESIS
DNSSNVSSNIDRVPDSSNDSSSESASESPPQLDKKPITCDLFKPHKQIYL
VYNLLSCKERRHLILPPLFAFSFVIYAFIGELTITSLYLKSDPLAFTPXY
WRTNHYVIISQK
Run BLAST on NCBI

transcript from alignment at sc0000002:206887..210787-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000511 ID=TCONS_00000511|Name=TCONS_00000511|organism=Clytia hemisphaerica|type=transcript|length=3901bp|location=Sequence derived from alignment at sc0000002:206887..210787- (Clytia hemisphaerica)
CTTATTGCAGGTGTATTTAAAGGTTTCAAACAAGTGCATTTGACTGAAGT CTGTTAACCAATCAAATTCAAGAAAGCTTTACAACCAGCCAATCAGAATG TTGAAAAAGATAACAAGCGAGCCAATCATATTTCTTTATGCCACCGTGTA CATGATCAACTTGTCCATTCTGCCACAGTTGGTTCTTCAAAAAGTTTGTT TACAAAAACATTATGGAAATTCAACTCTGTGTGGTGAAAAATCTGGGTTG GCAATCACACAAGAGATGAAGAAGGTAAAATTTCAACACATCTCAACTCA TATTAGACTTAGACTGGCACGCCAGTCGGGCTGGAACGGTATCACGCGGG AAAAGTGAGCGTAGGAGTTAGGTAAGCGTAAGAAGAAATTCATTTGTCGG TGGCAAGGGCTGAAATCCCTTAATCAGCAGCCTCTCACCAAGTTTTGATC GTTCTTCTACGCAGCTCCTATTCTAGCAAACGCCCGCTGCCTTTATGCTC CCGCCCTCTGACATGATTAATTAACAGACTAGTTTGCTAGTCTAACTAGA CTATACTCCTGGTGGGGGGGGGTACTTAGACAAAATTGGGTACGGGGACT TGTTGCTGGTCAGGGTCCCTTTTCTAGGCTCTGAAGAAATCAGTAATAGA GTCCCAAGTTTAATAGTTTTCAAGATTTGTACCTGACAGGGTCAACTTTT GGTTATTTTGTATGATTTTCAAGGTGAAATTAGAGCATTTTTCAATTTTT CGTCTCAGTAATTTTTGCAACTTTTCAGGTTCCCATATTTACCAAACATT CATATCTTACAGGTTCTAGTTTTAAGCTCCAGAGGCATTCCCCGTCGGCC GTCAAGGTCTTCCCCCGGGCTTATGCTATAGTCTAACACTTTGTCACCTT CTGAAAAATAATATCCAAGGCGAAGAAAATTCGTGAACGGGTTTTGCTTT CAAAGCGAGTTTAAAGCCGTAGAGTATGCAATGTTGATTAGTCCGAAAAG GGCGTGCAGGTTGTACAGACAGGGACAGACAGAAACCTACCTAGGCAAAA GCATAGGCTTTGCAGATATACTGCAAAGATCACGGCACAAAACCCACGTC CGATCTTTTAATAAAATATAGAAAAATGACACAATCTTACGCATATCGAG AATCTTCGCTAAAAATGAGTTTGCGAGTTTGAGGCTCAAATCAAATCTAT CTATCAGGTTTATAAGTCTTGTGTGTTGAAATTTTGTTATTACATTTCAC AATTTTATGATATTATTGAATTTTAGGAAACGTCTCATTGGTGGTTCGCT ATCCTTGCTTCATCTCAAATTCCCGCCATTTTTACCGTTCTCATCTGGGG ACCAATCAGCGACGCGATCGGTCGGAAGAAAGCAATGTTGTTGATTCCAA TAATGAGTATTTTGCAGAATATTGTTTTCCTGTTATGCTCCTATTATATC AATTCTTCGATCATTTATTTGTGTTTTGGAATGTTTTTGGCGTGTTTTTT TGGAGAATTTCCAGGAGTACTAGCTTTATCCTGTGCATTCATTGCAGATG TTACAGCGGGTCTAAAAGCTAAATCTCGAGTCACTAGAATGGCGCTTATA GATTGTGCTGTTAATCTAGCTGGGTTACCTGCAGGGCTTTTCGCTGGTCA GCTTTTAAAACATCTAGGATTCACAGCTGTCTTTGGACTTTCGATCGGAA TCAATCTGTTGTTGTTAGCTTACATCANTATGCTATAGTCTAACACTTTG TCACCTTCTGAAAAATAATATCCAAGGCGAAGAAAATTCGTGAACGGGTT TTGCTTTCAAAGCGAGTTTAAAGCCGTAGAGTATGCAATGTTGATTAGTC CGAAAAGGGCGTGCAGGTTGTACAGACAGGGACAGACAGAAACCTACCTA GGCAAAAGCATAGGCTTTGCAGATATACTGCAAAGATCACGGCACAAAAC CCACGTCCGATCTTTTAATAAAATATAGAAAAATGACACAATCTTGCGCA TATCGAGAATCTTCGCTAAAAATGAGTTTGCGAGTTTGAGGCTCAAATCA AATCTATCTATCAGGTTTATAAGTCTTGTGTGTTGAAATTTTGTTATTAC ATTTCACAATTTTATGATATTATTGAATTTTAGGAAACGTCTCATTGGTG GTTCGCTATCCTTGCTTCATCTCAAATTCCCGCCATTTTTACCGTTCTCA TCTGGGGACCAATCAGCGACGCGATCGGTCGGAAGAAAGCAATGTTGTTG ATTCCAATAATGAGTATTTTGCAGAATATTGTTTTCCTGTTATGCTCCTA TTATATCAATTCTTCGATCATTTATTTGTGTTTTGGAATGTTTTTGGCGT GTTTTTTTGGAGAATTTCCAGGAGTACTAGCTTTATCCTGTGCATTCATT GCAGATGTTACAGCGGGTCTAAAAGCTAAATCTCGAGTCACTAGAATGGC GCTTATAGATTGTGCTGTTAATCTAGCTGGGCTACCTGCAGGGCTTTTCG CTGGTCAGCTTTTAAAACATCTAGGATTCACAGCTGTCTTTGGACTTTCG ATCGGAATCAATCTGTTGTTGTTAGCTTACATCGTTTTTCTTTTACCCGA CCCAAGAGCATTACAAAAGGTTCCCAAAGGCAAAGAGCTCAAAGAATCAA CATCTTCGGAAAACAAGAAACTTGTTCCTGCGTCAGCGACGAATGAAAGC ATCTCAGATAACTCAAGCAATGTTTCCAGTAACATTGACAGAGTGCCCGA CTCTTCAAACGATAGCTCCTCAGAGTCTGCAAGTGAATCGCCACCTCAGT TAGACAAGAAACCAATCACTTGTGATCTCTTTAAACCGCACAAGCAAATC TACCTTGTTTACAATCTATTATCGTGCAAAGAAAGGAGACATTTAATTCT ACCACCCCTGTTTGCATTCAGTTTTGTTATTTACGCTTTTATTGGAGAAC TAACCATTACGTCATTATATCTCAAAAGTGATCCTCTAGCCTTCACTCCA GNTTATTGGAGAACTAACCATTACGTCATTATATCTCAAAAGTGATCCAC TAGCCTTCACTCCAGACTACATCGGATATTATTACGCCTCACAGGCTGTT ATTCGTAGCCTTGGAATTCTCCTGGTGACACAATTCGCTTATCGAGTTTT AAAAGCGTCAGATGTTAACGTTTTATTATTTGGGATTGCTACACAAATTA TGTGTTATGTTCTTATCGGGTTTTCTCGGGATACGTTATCGGTATTCATG GCAAATATTATCGGTTTCGGTTTAACAGTCGCGCTATCGTTGTCTAGAAG CTATACATCAAAACATGTACCACCGGAGCAAGTTGGTACCCTGATGGCGG CATTCGAATCTATCGACGCCCTATCATTTACGACAAACTTGATGTCGATT GAAGTTTACAATGCAACTCTAGATCGTTATTCAGGAGCTGTATTTCTCTT CTTAGCTGGCTGCTCAAGCGTTGGTTTTTGTATAACGGTGGCCAACAAAA TTTATTTAAAGCGAATACGAAATGAACTGAACAGCGAAATGAATGAAGCT CTTAATGAAAATTTTAGAACTTCGGATGCTTGATATATATTTATTCTTAA ACTTGACTTTTTGTTTTAATCTGCATATAATATTTTTGTTTTGTGAAGCC TAAATTTGTGATAATATTCTGATTTTTAATTTAGCTGTGATATTCGAATA GTTTATTCTTATTGAAATGTGACGAATTGTCTGACTAGGCTGAGAATATA GCCTGGAAGCCATCATACCTCTCCAAAATCGAAATATCCGAATAAAAAAT GTCATTCTAGGTCGAACTTTAAATTCTGCAAAGCGCTAAAATACCCAGAA TCGCTAGCATATTTTGACCTGAATTGTAGATCTTGACTAGATAGATTTCC A

Coding sequence (CDS) from alignment at sc0000002:206887..210787-

>TCONS_00000511 ID=TCONS_00000511|Name=TCONS_00000511|organism=Clytia hemisphaerica|type=CDS|length=2178bp|location=Sequence derived from alignment at sc0000002:206887..210787- (Clytia hemisphaerica)
GAAACGTCTCATTGGTGGTTCGCTATCCTTGCTTCATCTCAAATTCCCGC
CATTTTTACCGTTCTCATCTGGGGACCAATCAGCGACGCGATCGGTCGGA
AGAAAGCAATGTTGTTGATTCCAATAATGAGTATTTTGCAGAATATTGTT
TTCCTGTTATGCTCCTATTATATCAATTCTTCGATCATTTATTTGTGTTT
TGGAATGTTTTTGGCGTGTTTTTTTGGAGAATTTCCAGGAGTACTAGCTT
TATCCTGTGCATTCATTGCAGATGTTACAGCGGGTCTAAAAGCTAAATCT
CGAGTCACTAGAATGGCGCTTATAGATTGTGCTGTTAATCTAGCTGGGCT
ACCTGCAGGGCTTTTCGCTGGTCAGCTTTTAAAACATCTAGGATTCACAG
CTGTCTTTGGACTTTCGATCGGAATCAATCTGTTGTTGTTAGCTTACATC
GTTTTTCTTTTACCCGACCCAAGAGCATTACAAAAGGTTCCCAAAGGCAA
AGAGCTCAAAGAATCAACATCTTCGGAAAACAAGAAACTTGTTCCTGCGT
CAGCGACGAATGAAAGCATCTCAGATAACTCAAGCAATGTTTCCAGTAAC
ATTGACAGAGTGCCCGACTCTTCAAACGATAGCTCCTCAGAGTCTGCAAG
TGAATCGCCACCTCAGTTAGACAAGAAACCAATCACTTGTGATCTCTTTA
AACCGCACAAGCAAATCTACCTTGTTTACAATCTATTATCGTGCAAAGAA
AGGAGACATTTAATTCTACCACCCCTGTTTGCATTCAGTTTTGTTATTTA
CGCTTTTATTGGAGAACTAACCATTACGTCATTATATCTCAAAAGTGATC
CTCTAGCCTTCACTCCAGNTTATTGGAGAACTAACCATTACGTCATTATA
TCTCAAAAGTGAATGTTGAAAAAGATAACAAGCGAGCCAATCATATTTCT
TTATGCCACCGTGTACATGATCAACTTGTCCATTCTGCCACAGTTGGTTC
TTCAAAAAGTTTGTTTACAAAAACATTATGGAAATTCAACTCTGTGTGGT
GAAAAATCTGGGTTGGCAATCACACAAGAGATGAAGAAGGAAACGTCTCA
TTGGTGGTTCGCTATCCTTGCTTCATCTCAAATTCCCGCCATTTTTACCG
TTCTCATCTGGGGACCAATCAGCGACGCGATCGGTCGGAAGAAAGCAATG
TTGTTGATTCCAATAATGAGTATTTTGCAGAATATTGTTTTCCTGTTATG
CTCCTATTATATCAATTCTTCGATCATTTATTTGTGTTTTGGAATGTTTT
TGGCGTGTTTTTTTGGAGAATTTCCAGGAGTACTAGCTTTATCCTGTGCA
TTCATTGCAGATGTTACAGCGGGTCTAAAAGCTAAATCTCGAGTCACTAG
AATGGCGCTTATAGATTGTGCTGTTAATCTAGCTGGGCTACCTGCAGGGC
TTTTCGCTGGTCAGCTTTTAAAACATCTAGGATTCACAGCTGTCTTTGGA
CTTTCGATCGGAATCAATCTGTTGTTGTTAGCTTACATCGTTTTTCTTTT
ACCCGACCCAAGAGCATTACAAAAGGTTCCCAAAGGCAAAGAGCTCAAAG
AATCAACATCTTCGGAAAACAAGAAACTTGTTCCTGCGTCAGCGACGAAT
GAAAGCATCTCAGATAACTCAAGCAATGTTTCCAGTAACATTGACAGAGT
GCCCGACTCTTCAAACGATAGCTCCTCAGAGTCTGCAAGTGAATCGCCAC
CTCAGTTAGACAAGAAACCAATCACTTGTGATCTCTTTAAACCGCACAAG
CAAATCTACCTTGTTTACAATCTATTATCGTGCAAAGAAAGGAGACATTT
AATTCTACCACCCCTGTTTGCATTCAGTTTTGTTATTTACGCTTTTATTG
GAGAACTAACCATTACGTCATTATATCTCAAAAGTGATCCTCTAGCCTTC
ACTCCAGNTTATTGGAGAACTAACCATTACGTCATTATATCTCAAAAGTG
AATGTTGAAAAAGATAACAAGCGAGCCAATCATATTTCTTTATGCCACCG
TGTACATGATCAACTTGTCCATTCTGCCACAGTTGGTTCTTCAAAAAGTT
TGTTTACAAAAACATTATGGAAATTCAACTCTGTGTGGTGAAAAATCTGG
GTTGGCAATCACACAAGAGATGAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000316XLOC_000316Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000511-proteinTCONS_00000511-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000511-exon-sc0000002-1575043694:210514..210787TCONS_00000511-exon-sc0000002-1575043694:210514..210787Clytia hemisphaericaexon
TCONS_00000511-exon-sc0000002-1575043694:206887..208654TCONS_00000511-exon-sc0000002-1575043694:206887..208654Clytia hemisphaericaexon
TCONS_00000511-exon-sc0000002-1510915933:210514..210787TCONS_00000511-exon-sc0000002-1510915933:210514..210787Clytia hemisphaericaexon
TCONS_00000511-exon-sc0000002-1510915933:206887..208654TCONS_00000511-exon-sc0000002-1510915933:206887..208654Clytia hemisphaericaexon
TCONS_00000511-exon-sc0000002-1491911889:210514..210787TCONS_00000511-exon-sc0000002-1491911889:210514..210787Clytia hemisphaericaexon
TCONS_00000511-exon-sc0000002-1491911889:206887..208654TCONS_00000511-exon-sc0000002-1491911889:206887..208654Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:206887..210787 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.58065 0.566226 0.175318 0.294601 0.182709 0.247507 1.93123 2.1091 1.38416 1.38774 1.53432 0.834775 1.6049 1.86314 1.18924 0.923756 2.76065 3.22127 2.10709 1.99262 6.82926 6.96091 1.92108 2.74977 3.16754 3.81463 1.03504 0.727266 0.0644477 0.0601491
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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