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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000510 ID=TCONS_00000510|Name=TCONS_00000510|organism=Clytia hemisphaerica|type=transcript|length=1302bp
CGCTTTCTTTATGCGAACGGCCTATTGTGTTAGGTCCATATAGAATACTA
TTCAGTGATACTTGACAACCCTAAATACACCCCAGCATCAAATTCATATC
CATATTCTCTTCCCAAAGATTAAACTTACTTAGCAGCTTCACTGCTAACC
AAAACGACTGATCCTATGATTTCAATACTTTGAAAGATCCAAGTTTAAAT
AATGTTTTCGctttctttttattcaggaAAAATGGATCACACAAAGCGGA
GTCAATTTGTCAACATCACAATCAATACGGACTGCTTTCACTAAACTCAA
GAAGTGTGCAGCTGTACCACCGCCAATGTTACCGATTGTTATCATTATGA
GCTGCTCAGGGAGAGCGTGTTGCTTGAGAGTcacaaagaagaaaataaga
accattttttattaaatttaacaATGTATAAAATGATATTTGCTACGGAA
TACATTagtcattaataaaaaaagTGGCCACAAATAAATATGAGGCCATT
GatcattaaaatcaaattaataaaatatAGAGTGTAACTTCGTTGGTCTT
TCTTTTTGGTTTCTCTTTCATTCTGGGCGTTGTTTTCATTCTCCCAAACA
CACACACCACTGTCAATGCCGCCCCGTTGGAGCTTTTTCCTTCAGTGTAG
ATGGAAATTCCTATCTAATCGTAGTGTCCCGATTGAGATAGAAACTCTAT
ATACCAGCTCGAAGTTTacagtgggaatggttttgcGGTGCAATTTTTCC
ACCATACTGAGGGTAAAGTCGTTTGGTTCTTTTCAAGTTTGTTAAACTTT
CAGGTTATTTTTTCCACTGACGacgatttttttgctaaattttccagtgg
ggcgggGGGGGGCTTCACCGGATCTCTAGAGGGCTTCCAGATTCTCGCCC
TCGCCAATGATAATGAATGTGTATCATCATTACGATATTACGACGttgga
aaatgtggaaaatacacGTCTCCTGTATGATCGCAATTGTGttcccataa
aaaatgaaaactgaaatgaaaaaagaaaaagaagaaatagcGAGAGAAGA
ATTAATTGATGTGTTAATTGATTGTAAAACCATATTGACAAATcttaaat
tttctgattttccaccccgtgcaaatgcacagagttccaaaaaACCAGTG
TATTTACACCGGGTTTTCGCGCTACTTTCGATTTCATTCAACCCCgcgca
aatgcaaggatttgccTGACTGACTAAATGTTGAATTTTACCTATAATGC
AGTTTTACTATTAAAATAATTATGTGAAAGcatcaaaatatttcaagtcT
GT Run BLAST on NCBI transcript from alignment at sc0000002:108072..109737- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000510 ID=TCONS_00000510|Name=TCONS_00000510|organism=Clytia hemisphaerica|type=transcript|length=1666bp|location=Sequence derived from alignment at sc0000002:108072..109737- (Clytia hemisphaerica)
CGCTTTCTTTATGCGAACGGCCTATTGTGTTAGGTCCATATAGAATACTA
TTCAGTGATACTTGACAACCCTAAATACACCCCAGCATCAAATTCATATC
CATATTCTCTTCCCAAAGATTAAACTTACTTAGCAGCTTCACTGCTAACC
AAAACGACTGATCCTATGATTTCAATACTTTGAAAGATCCAAGTTTAAAT
AATGTTTTCGCTTTCTTTTTATTCAGGAAAAATGGATCACACAAAGCGGA
GTCAATTTGTCAACATCACAATCAATACGGACTGCTTTCACTAAACTCAA
GAAGTGTGCAGCGTAAGTTACATTGTTTGTATGAAACAATTATCTCATAT
GTTGAAATCTAGATCGATTTTGTGCTTCCCATCAATTAGTGTGCGTTACT
TGTCACCGTAACTTCGGCAATTTATCTACCGACTCTTGAGCGACGGTCAA
TTTGTCTAGTTTCAAGCTTAACAAAATCTACCTTACCACTAGCCTCGATC
CCTGCGTATTATCATCGTTTTGATTCTTACTGGTAGCGCTAGATAGACCA
GGGTATTCTCTGGCCTCAATTTAGCAATAACATAAATAAAGCCTGGGATA
CACAGGGACAAGGTTGCCGTACCCACGGATCTTTACACTCATATGATAGT
AACTTTAATTTTCATTATTTATTTAGTGTACCACCGCCAATGTTACCGAT
TGTTATCATTATGAGCTGCTCAGGGAGAGCGTGTTGCTTGAGAGTCACAA
AGAAGAAAATAAGAACCATTTTTTATTAAATTTAACAATGTATAAAATGA
TATTTGCTACGGAATACATTAGTCATTAATAAAAAAAGTGGCCACAAATA
AATATGAGGCCATTGATCATTAAAATCAAATTAATAAAATATAGAGTGTA
ACTTCGTTGGTCTTTCTTTTTGGTTTCTCTTTCATTCTGGGCGTTGTTTT
CATTCTCCCAAACACACACACCACTGTCAATGCCGCCCCGTTGGAGCTTT
TTCCTTCAGTGTAGATGGAAATTCCTATCTAATCGTAGTGTCCCGATTGA
GATAGAAACTCTATATACCAGCTCGAAGTTTACAGTGGGAATGGTTTTGC
GGTGCAATTTTTCCACCATACTGAGGGTAAAGTCGTTTGGTTCTTTTCAA
GTTTGTTAAACTTTCAGGTTATTTTTTCCACTGACGACGATTTTTTTGCT
AAATTTTCCAGTGGGGCGGGGGGGGGCTTCACCGGATCTCTAGAGGGCTT
CCAGATTCTCGCCCTCGCCAATGATAATGAATGTGTATCATCATTACGAT
ATTACGACGTTGGAAAATGTGGAAAATACACGTCTCCTGTATGATCGCAA
TTGTGTTCCCATAAAAAATGAAAACTGAAATGAAAAAAGAAAAAGAAGAA
ATAGCGAGAGAAGAATTAATTGATGTGTTAATTGATTGTAAAACCATATT
GACAAATCTTAAATTTTCTGATTTTCCACCCCGTGCAAATGCACAGAGTT
CCAAAAAACCAGTGTATTTACACCGGGTTTTCGCGCTACTTTCGATTTCA
TTCAACCCCGCGCAAATGCAAGGATTTGCCTGACTGACTAAATGTTGAAT
TTTACCTATAATGCAGTTTTACTATTAAAATAATTATGTGAAAGCATCAA
AATATTTCAAGTCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000510-exon-sc0000002-1575043694:109426..109737 | TCONS_00000510-exon-sc0000002-1575043694:109426..109737 | Clytia hemisphaerica | exon |
| TCONS_00000510-exon-sc0000002-1575043694:108072..109061 | TCONS_00000510-exon-sc0000002-1575043694:108072..109061 | Clytia hemisphaerica | exon |
| TCONS_00000510-exon-sc0000002-1510915933:109426..109737 | TCONS_00000510-exon-sc0000002-1510915933:109426..109737 | Clytia hemisphaerica | exon |
| TCONS_00000510-exon-sc0000002-1510915933:108072..109061 | TCONS_00000510-exon-sc0000002-1510915933:108072..109061 | Clytia hemisphaerica | exon |
| TCONS_00000510-exon-sc0000002-1491911889:109426..109737 | TCONS_00000510-exon-sc0000002-1491911889:109426..109737 | Clytia hemisphaerica | exon |
| TCONS_00000510-exon-sc0000002-1491911889:108072..109061 | TCONS_00000510-exon-sc0000002-1491911889:108072..109061 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:108072..109737 - |
Blast
The following BLAST results are available for this feature:
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