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TCONS_00000509 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000509
Unique NameTCONS_00000509
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000509 ID=TCONS_00000509|Name=TCONS_00000509|organism=Clytia hemisphaerica|type=transcript|length=598bp
ACcttccaaaaaaacaaattttaaagatGGCGGCTCTTGCTACGAGAAGC
ACGTTTTTACTTCAGCAACAAAGAACTCTTCCAGTGTGCAGTGTTATTTT
TTCTAGAGGATTGAAGAAGAACCAACTTtacaagaagaagaagaagagaa
agATCAAGGAAAGAGACGGTAAAGAAGTCACGGTTGAACATATTTTCTGG
GACAAATATTATGCAGACAACCCATCAATTCTTGCTGAGCGTCAAATGAT
AAACACCAAAAGTAGTGCAAGTGGCAGTACTGTTGTTGAAGGAGGAGGTT
CCCGTCCATTAAGTGCAAGAAAGGTTTATGACACACTGACCACAGGAGAC
AAGagGCTTGCCATTGCTGGTGTATTTGCTTTGGTCACTGGATTCATTGC
AATGAAGATCACCTTTGCTTAGTAAGAAGCTTATAAATAAAGTCATCgtc
aaagaaaatttaatttgtacatattttttatacatAAGAATAAATCAAAA
TTGGGATATTCGTCCCTGTCAAAAAGTATCTTCTAATTTACTAGTCCAGG
GTTTTTAATTCTTATCAACATCAAACTTTCACTTTCTAAAGCTGGGTG
Run BLAST on NCBI

protein sequence of TCONS_00000509-protein

>TCONS_00000509-protein ID=TCONS_00000509-protein|Name=TCONS_00000509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
LPKKQILKMAALATRSTFLLQQQRTLPVCSVIFSRGLKKNQLYKKKKKRK
IKERDGKEVTVEHIFWDKYYADNPSILAERQMINTKSSASGSTVVEGGGS
RPLSARKVYDTLTTGDKRLAIAGVFALVTGFIAMKITFA
Run BLAST on NCBI

transcript from alignment at sc0000002:45180..52383-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000509 ID=TCONS_00000509|Name=TCONS_00000509|organism=Clytia hemisphaerica|type=transcript|length=7204bp|location=Sequence derived from alignment at sc0000002:45180..52383- (Clytia hemisphaerica)
ACCTTCCAAAAAAACAAATTTTAAAGATGGCGGCTCTTGCTACGAGAAGC ACGTTTTTACTTCAGCAACAAAGAACTCTTCCAGTGTGCAGTGTTATTTT TTCTAGAGGATTGAAGAAGAACCAACTTTACAAGAAGAAGAAGAAGAGAA AGATCAAGGAAAGAGACGGTAAAGAAGTCACGGTTGAACATATTTTCTGG GACAAATATTATGCAGACAACCCATCAATTCTTGCTGAGCGTCAAATGAT AAACACCAAAAGTAGTGCAAGTGGCAGTACTGTTGTTGAAGGAGGAGGTT CCCGTCCATTAAGTGCAAGAAAGGTTTATGACACACTGACCACAGGAGAC AAGAGGTTTTTTATTATTATATCTCCTTTTTTCCCTTTTTTTAGGGCTAG GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTCCCG ATGGAGGATTTTGAGCCGAGTTGAAAGATTTTCATGGTCCGTATTGGCAT TCAAACCCTTACAATGTTTTCGAATCTTTTCTTCTCTAAACAACTGGTGT GAAATATGCGCCGTCATATTTTAGTATTACTGGCCAGCACTGTCACTTCT CCCTCGCACACATTTTACGGCGATGTTATGTTATCTCTCTTACTTTAAAC TCGATATTATCTCCGCAGTAGTTGATCATGTGATAAGCGGTTTGAGAGAA ACCTTCCAAAAAAACAAATTTTAAAGATGGCGGCTCTTGCTACGAGAAGC ACGTTTTTACTTCAGCAACAAAGAACTCTTCCAGTGTGCAGTGTTATTTT TTCTAGAGGATTGAAGAAGAACCAACTTTACAAGAAGAAGAAGAAGAGAA AGATCAAGGAAAGAGACGGTAAAGAAGTCACGGTTGAACATATTTTCTGG GACAAATATTATGCAGACAACCCATCAATTCTTGCTGAGCGTCAAATGAT AAACACCAAAAGTAGTGCAAGTGGCAGTACTGTTGTTGAAGGAGGTTCCC GTCCATTAAGTGCAAGAAAGGTTTATGACACACTGACCACAGGAGACAAG AGGTTTTTTATTATTATATCTCCTTTTTTCCCTTTTTTTAGGGCTAGGGT GGTCACGCACTCACATCAATTGACGTTAGGCGAGAGAAATTTTTTTCTTC ACCCTTTCTTCAATAAATTGAAGATGAGAAAAAACCTAAGCCTTAGAATC ACAGATGGAAAAAAATATATGAAGGTGGGATTTTACAGCCGTCCGTCGTG CAAGGCACGTCAGGGATTACCATAGTTGTCAATGTGTTGTGTCAGCTTGT CAGCATTGTATTGTTATAAAGGGAAAGATGAAAGAGGTAAGACTAGCCTA GCTTCTATAGAAGTTTAAGTTTAGACTGTGTTTATATCAAAATCTGCAAC AAAAAATGAAAGTTGTCTCTTCTTACTGATTGCTTCGTGGCACTCTATCG CGGACTATTTATCAGTGCGTCACAAACAGCCATATATAGGGTGCGCACTC GTCGGGATTTTTTGCGCGGAACGAGGAAGAATTTACAAAAATGAACTTCA AGGCATTAGTACTTACCTTTAAATCATCCAAATGTGCTCATTCTTTTTTT TAAATCAATCAGGAATTATCAGGGAAACAAGTAAAAAAAACTGCATCAAG GTATCTATTTTCTTTCCAAAGATATTCATGTTTTTCGACGNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNTTCATGTTTTTCGACGTCAAGGTGAAA ACGCGATTTAGCGCTGACCACGGCACCGGAAAATTCTCGACCCACATTGA AACAAATGACTGTCGCTATTGAGCTGGTCCATCTTTTCAATCGCGGTTTT TTTAGTAAACCCAGGGTAAGATTAAGCTACAATCTATCACAACCTGCTTT ATTTGAAAATCTACAGGCCGTCTGGAATTTCGAAAAATAAGAAGAAATTG CGATTTTTTAACAAGATTGCGGATTTTTTCANNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNTATACTTCATTGGTGAAATATTCAATAAAT TCCTGGTTTCAATTTTCAGTGGGCGTTCTTCTAGGGCTTCGTTTATCGCG CAATTTTTGCATCACACAAACTTTCTCGGCCGCTCGTAATAATTATACAT TGCCAAATTTGGTTCTCCATTGTCGAGTCAGGATCGATGGTGACGTCACC TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNATTCAGAGTACTTTCTTTTACTCGCGGGA TTGATGGTAACTTTTCATCTTCGTTATTTTTAAAATGAAGCACAACCGAA AAAAAACGAAACTTCAGAAAGTTGCGTATTTCCAGTGAGTAAACGACTCT GACAATTAACAAAATTGATGATGATGATTTTTTTTCGGTCAGGCCAATGT CTCGCATTGGGGGTTCTAGTCTTGAGCCCAAAGCCTACGCAGGATTGCAG CGTTTGGGTAAACGAGACAAAACTCTAAAAAAGCTGGTGTTTTGACGCGC TTCCGTGCTCTCGAAATATCGCGGTTTGAGACGCACTGTTTATTTAATTT CCACCAATAAGATTGCTGCATTTCATACAGCCCTTCTCTTTGGCACCCGT GGCCTTTCAGTGCCTTGAAGCACAGGCGGCTGTAAAATCTCTCCCTTCAT AAAACTTCTTTTATTTGTTTCAATCCATGATCCTGAGGAGTACACTATAT TTCTCATCCTCAATTCTCCAAAGAAAGCGGAAATTTAATTAATGCGAGAG TTAGATTGTCAACAAAAAGTGCCATTAAAAATCATTGAATAATAGAAGAG CTTAAAATCTCAAATATTTTCATTTTGAAGAATTGCTACAAAAAAGTGAA ACATGGAAGAGTCATTGAAATGGGGGATTTGGAAAACTTTCTATATACCG GGTGACCCACGAAAAAGTTCAGACGTTTCCTGACATCTTGAGACCGAACA AATGTCCCAAAGTGCTTGGAGTTTTGATATTTAGAAAGTAGATATCCTAA CTTAAAATTTGAGCTATCACTTTTTAAATTTGACCAATTTGTTCTCCACT TATGAGCTTTTAAAGTCAAAATTCACTTTTCGGAAAGTGTAAAAAACACG TAAAAAAGAGGTATTAAATTTAAGCAATCAATTAGAAAATCACTTACAAA TTGACTTATTTAACGAGTTTTGTGACATTAATAATTAATAAAAACACTTT TAGAAGTAATTTTTGTTTAAAACAAGTCTAGTTTTTATAAAAATTGGCGC TTTTGTAGATTTTTTTCAGATTTTACCAAATTTGATACCCCTTTTTTACG TGTTTTTTACACTTTCCAAAAAGTGAATTTTGACTTTAAAAGCTCACAAG CGGAGAACAAATTGGTCAAATTTAAAAAGTGATAGCTCAAATTTTAAGTT AGGATATCTAATTTCTAAATATCAAAACTCCAAGCACTTTGGGACATTTG TTCGGCCTCAAGACGTCAAGAAACATCTGAACTTTTTCGTGGGTCACCCG GTATTATGTTTAGTTTTTTGCAAAAACCCCTGTAACTATGAGCAAGCACC CCGTTGTTAAGATTGGCTTGAAATCAAAAATGAAACCACTGAAAACGAAA GTAAAATTGGCCCGCACTCCAAATCCCGTAATCTTGATATAGGAGTTTAA GTCTGTTTAGTAAATGTGCAAGAGGTAGCGAAATAATGTGTCTGACGAAG GGTTAAATGTCTCAAGATTTAGTTTTATTACCACAGTGGCAATGTTTTCA AAGAGGTGTAGGGACAGTTAGGGATTCATCAACAGAACATCCAATTGANT TTCAAAGAGGTGTAGAGACAGGTAGGGATTCATCAACAGAACATCCAATT GATGTTTTCTGTGGTAATTTTGAGTTTGAATGGCTCCCCATGAACATACC GGGTGCGCCACAAAAAAGTTTCTCTCTTTAAAACTAATTTTCTCAAAATC TAAAATTTTTAGAAGAACCATTCCAATTTCATTGGAAAGAAGAAAGATAA ACTTAAATTTTGATAGGTTATTTATTAAATTTGATTCATTAGATCAAAAG TTATGCTCAATTAAATAAAAAAGTTACTTTCTGAAAGTGCTCAAAAAGGT TAAAAATCGACCTTCTATCAAATCAAACAGAAGCATAATTACTTGTTACA TCAGTATTTTCGCTTTAGTCATTAAAAATGATAATTAGCTGTCTAAATGA TCTTTTGTTGTATAATGGAAGGTTTAATTTCAACAAAAGGCAGAAAATTC GTCGAAAAAGGCCAAAAATCCAGTAAAATTCATAAAAATACATAAAAATA TGGGTTTTGCGGTACATCCAGTCTTACTAGACTTTATCCAATCTAAAACC AAAAATGTGAGGAAAATTTGGGTAAAATAATTTAAGGTGATCTTGATTAA NAAGAAAATTAGTTTTAAAGAGAGAAACTTTTTTGTGGCGCACCCGGTAG AAAAATAAACCTTTTCCTAATCATGATGTCATATCACATAATAAAAATGT TAGACTTTGTTTTAAAAAAACTTGAGAAGACTACTCAATCAATTTTATCT TCACAGGCTTGCCATTGCTGGTGTATTTGCTTTGGTCACTGGATTCATTG CAATGAAGATCACCTTTGCTTAGTAAGAAGCTTATAAGTATGTTCTTTGT TAGCAATGACCATTTAAGTAACAGCATGGTGTGTTAAATTTATTCTTTTA AAGACTCTTTCCGTATTTTCAATTTTTCAAGTTTAACTTGAGAGGATTAT ATTGCTCAATATTTTAAAAGTTATCTTCCATAAAAGAAAAAACTAAAAAG TACTGAGAGTTCCGGCCTTACGTACTAATTATATGTACAGTAATATTATA CAGAATTATTGCCTAAAGTATTAATAATGTTAAAAAAACAAAAAATGTTA CCATTTTGATATATATTCATTAATGATATTTTTCTCTTGTAGATAAAGTC ATCGTCAAAGAAAATTTAATTTGTACATATTTTTTATACATAAGAATAAA TCAAAATTGGGATATTCGTCCCTGTCAAAAAGTATCTTCTAATTTACTAG TCCAGGGTTTTTAATTCTTATCAACATCAAACTTTCACTTTCTAAAGCTG GGTG

Coding sequence (CDS) from alignment at sc0000002:45180..52383-

>TCONS_00000509 ID=TCONS_00000509|Name=TCONS_00000509|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0000002:45180..52383- (Clytia hemisphaerica)
GCTTGCCATTGCTGGTGTATTTGCTTTGGTCACTGGATTCATTGCAATGA
AGATCACCTTTGCTTAGCTTCCAAAAAAACAAATTTTAAAGATGGCGGCT
CTTGCTACGAGAAGCACGTTTTTACTTCAGCAACAAAGAACTCTTCCAGT
GTGCAGTGTTATTTTTTCTAGAGGATTGAAGAAGAACCAACTTTACAAGA
AGAAGAAGAAGAGAAAGATCAAGGAAAGAGACGGTAAAGAAGTCACGGTT
GAACATATTTTCTGGGACAAATATTATGCAGACAACCCATCAATTCTTGC
TGAGCGTCAAATGATAAACACCAAAAGTAGTGCAAGTGGCAGTACTGTTG
TTGAAGGAGGAGGTTCCCGTCCATTAAGTGCAAGAAAGGTTTATGACACA
CTGACCACAGGAGACAAGAGGCTTGCCATTGCTGGTGTATTTGCTTTGGT
CACTGGATTCATTGCAATGAAGATCACCTTTGCTTAGCTTCCAAAAAAAC
AAATTTTAAAGATGGCGGCTCTTGCTACGAGAAGCACGTTTTTACTTCAG
CAACAAAGAACTCTTCCAGTGTGCAGTGTTATTTTTTCTAGAGGATTGAA
GAAGAACCAACTTTACAAGAAGAAGAAGAAGAGAAAGATCAAGGAAAGAG
ACGGTAAAGAAGTCACGGTTGAACATATTTTCTGGGACAAATATTATGCA
GACAACCCATCAATTCTTGCTGAGCGTCAAATGATAAACACCAAAAGTAG
TGCAAGTGGCAGTACTGTTGTTGAAGGAGGAGGTTCCCGTCCATTAAGTG
CAAGAAAGGTTTATGACACACTGACCACAGGAGACAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000314XLOC_000314Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000509-proteinTCONS_00000509-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000509-exon-sc0000002-1575043694:52029..52383TCONS_00000509-exon-sc0000002-1575043694:52029..52383Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1575043694:45647..45727TCONS_00000509-exon-sc0000002-1575043694:45647..45727Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1575043694:45180..45341TCONS_00000509-exon-sc0000002-1575043694:45180..45341Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1510915933:52029..52383TCONS_00000509-exon-sc0000002-1510915933:52029..52383Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1510915933:45647..45727TCONS_00000509-exon-sc0000002-1510915933:45647..45727Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1510915933:45180..45341TCONS_00000509-exon-sc0000002-1510915933:45180..45341Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1491911889:52029..52383TCONS_00000509-exon-sc0000002-1491911889:52029..52383Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1491911889:45647..45727TCONS_00000509-exon-sc0000002-1491911889:45647..45727Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1491911889:45180..45341TCONS_00000509-exon-sc0000002-1491911889:45180..45341Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:45180..52383 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.51076e-05 21.3137 13.3584 5.69925 0 0 0 0 0 0 1.4048 0 0 0.451111 1.00864 0 0 0 0.424606 3.52731 18.0538 14.2576 3.56216 0 0 0 2.61924 1.75727 5.92728 3.94777
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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