TCONS_00000509 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000509
Unique NameTCONS_00000509
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000509 ID=TCONS_00000509|Name=TCONS_00000509|organism=Clytia hemisphaerica|type=transcript|length=598bp
ACcttccaaaaaaacaaattttaaagatGGCGGCTCTTGCTACGAGAAGC
ACGTTTTTACTTCAGCAACAAAGAACTCTTCCAGTGTGCAGTGTTATTTT
TTCTAGAGGATTGAAGAAGAACCAACTTtacaagaagaagaagaagagaa
agATCAAGGAAAGAGACGGTAAAGAAGTCACGGTTGAACATATTTTCTGG
GACAAATATTATGCAGACAACCCATCAATTCTTGCTGAGCGTCAAATGAT
AAACACCAAAAGTAGTGCAAGTGGCAGTACTGTTGTTGAAGGAGGAGGTT
CCCGTCCATTAAGTGCAAGAAAGGTTTATGACACACTGACCACAGGAGAC
AAGagGCTTGCCATTGCTGGTGTATTTGCTTTGGTCACTGGATTCATTGC
AATGAAGATCACCTTTGCTTAGTAAGAAGCTTATAAATAAAGTCATCgtc
aaagaaaatttaatttgtacatattttttatacatAAGAATAAATCAAAA
TTGGGATATTCGTCCCTGTCAAAAAGTATCTTCTAATTTACTAGTCCAGG
GTTTTTAATTCTTATCAACATCAAACTTTCACTTTCTAAAGCTGGGTG
Run BLAST on NCBI

protein sequence of TCONS_00000509-protein

>TCONS_00000509-protein ID=TCONS_00000509-protein|Name=TCONS_00000509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
LPKKQILKMAALATRSTFLLQQQRTLPVCSVIFSRGLKKNQLYKKKKKRK
IKERDGKEVTVEHIFWDKYYADNPSILAERQMINTKSSASGSTVVEGGGS
RPLSARKVYDTLTTGDKRLAIAGVFALVTGFIAMKITFA
Run BLAST on NCBI

transcript from alignment at sc0000002:45180..52383-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000509 ID=TCONS_00000509|Name=TCONS_00000509|organism=Clytia hemisphaerica|type=transcript|length=7204bp|location=Sequence derived from alignment at sc0000002:45180..52383- (Clytia hemisphaerica)
ACCTTCCAAAAAAACAAATTTTAAAGATGGCGGCTCTTGCTACGAGAAGC
ACGTTTTTACTTCAGCAACAAAGAACTCTTCCAGTGTGCAGTGTTATTTT
TTCTAGAGGATTGAAGAAGAACCAACTTTACAAGAAGAAGAAGAAGAGAA
AGATCAAGGAAAGAGACGGTAAAGAAGTCACGGTTGAACATATTTTCTGG
GACAAATATTATGCAGACAACCCATCAATTCTTGCTGAGCGTCAAATGAT
AAACACCAAAAGTAGTGCAAGTGGCAGTACTGTTGTTGAAGGAGGAGGTT
CCCGTCCATTAAGTGCAAGAAAGGTTTATGACACACTGACCACAGGAGAC
AAGAGGTTTTTTATTATTATATCTCCTTTTTTCCCTTTTTTTAGGGCTAG
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTCCCG
ATGGAGGATTTTGAGCCGAGTTGAAAGATTTTCATGGTCCGTATTGGCAT
TCAAACCCTTACAATGTTTTCGAATCTTTTCTTCTCTAAACAACTGGTGT
GAAATATGCGCCGTCATATTTTAGTATTACTGGCCAGCACTGTCACTTCT
CCCTCGCACACATTTTACGGCGATGTTATGTTATCTCTCTTACTTTAAAC
TCGATATTATCTCCGCAGTAGTTGATCATGTGATAAGCGGTTTGAGAGAA
ACCTTCCAAAAAAACAAATTTTAAAGATGGCGGCTCTTGCTACGAGAAGC
ACGTTTTTACTTCAGCAACAAAGAACTCTTCCAGTGTGCAGTGTTATTTT
TTCTAGAGGATTGAAGAAGAACCAACTTTACAAGAAGAAGAAGAAGAGAA
AGATCAAGGAAAGAGACGGTAAAGAAGTCACGGTTGAACATATTTTCTGG
GACAAATATTATGCAGACAACCCATCAATTCTTGCTGAGCGTCAAATGAT
AAACACCAAAAGTAGTGCAAGTGGCAGTACTGTTGTTGAAGGAGGTTCCC
GTCCATTAAGTGCAAGAAAGGTTTATGACACACTGACCACAGGAGACAAG
AGGTTTTTTATTATTATATCTCCTTTTTTCCCTTTTTTTAGGGCTAGGGT
GGTCACGCACTCACATCAATTGACGTTAGGCGAGAGAAATTTTTTTCTTC
ACCCTTTCTTCAATAAATTGAAGATGAGAAAAAACCTAAGCCTTAGAATC
ACAGATGGAAAAAAATATATGAAGGTGGGATTTTACAGCCGTCCGTCGTG
CAAGGCACGTCAGGGATTACCATAGTTGTCAATGTGTTGTGTCAGCTTGT
CAGCATTGTATTGTTATAAAGGGAAAGATGAAAGAGGTAAGACTAGCCTA
GCTTCTATAGAAGTTTAAGTTTAGACTGTGTTTATATCAAAATCTGCAAC
AAAAAATGAAAGTTGTCTCTTCTTACTGATTGCTTCGTGGCACTCTATCG
CGGACTATTTATCAGTGCGTCACAAACAGCCATATATAGGGTGCGCACTC
GTCGGGATTTTTTGCGCGGAACGAGGAAGAATTTACAAAAATGAACTTCA
AGGCATTAGTACTTACCTTTAAATCATCCAAATGTGCTCATTCTTTTTTT
TAAATCAATCAGGAATTATCAGGGAAACAAGTAAAAAAAACTGCATCAAG
GTATCTATTTTCTTTCCAAAGATATTCATGTTTTTCGACGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTTCATGTTTTTCGACGTCAAGGTGAAA
ACGCGATTTAGCGCTGACCACGGCACCGGAAAATTCTCGACCCACATTGA
AACAAATGACTGTCGCTATTGAGCTGGTCCATCTTTTCAATCGCGGTTTT
TTTAGTAAACCCAGGGTAAGATTAAGCTACAATCTATCACAACCTGCTTT
ATTTGAAAATCTACAGGCCGTCTGGAATTTCGAAAAATAAGAAGAAATTG
CGATTTTTTAACAAGATTGCGGATTTTTTCANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTATACTTCATTGGTGAAATATTCAATAAAT
TCCTGGTTTCAATTTTCAGTGGGCGTTCTTCTAGGGCTTCGTTTATCGCG
CAATTTTTGCATCACACAAACTTTCTCGGCCGCTCGTAATAATTATACAT
TGCCAAATTTGGTTCTCCATTGTCGAGTCAGGATCGATGGTGACGTCACC
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNATTCAGAGTACTTTCTTTTACTCGCGGGA
TTGATGGTAACTTTTCATCTTCGTTATTTTTAAAATGAAGCACAACCGAA
AAAAAACGAAACTTCAGAAAGTTGCGTATTTCCAGTGAGTAAACGACTCT
GACAATTAACAAAATTGATGATGATGATTTTTTTTCGGTCAGGCCAATGT
CTCGCATTGGGGGTTCTAGTCTTGAGCCCAAAGCCTACGCAGGATTGCAG
CGTTTGGGTAAACGAGACAAAACTCTAAAAAAGCTGGTGTTTTGACGCGC
TTCCGTGCTCTCGAAATATCGCGGTTTGAGACGCACTGTTTATTTAATTT
CCACCAATAAGATTGCTGCATTTCATACAGCCCTTCTCTTTGGCACCCGT
GGCCTTTCAGTGCCTTGAAGCACAGGCGGCTGTAAAATCTCTCCCTTCAT
AAAACTTCTTTTATTTGTTTCAATCCATGATCCTGAGGAGTACACTATAT
TTCTCATCCTCAATTCTCCAAAGAAAGCGGAAATTTAATTAATGCGAGAG
TTAGATTGTCAACAAAAAGTGCCATTAAAAATCATTGAATAATAGAAGAG
CTTAAAATCTCAAATATTTTCATTTTGAAGAATTGCTACAAAAAAGTGAA
ACATGGAAGAGTCATTGAAATGGGGGATTTGGAAAACTTTCTATATACCG
GGTGACCCACGAAAAAGTTCAGACGTTTCCTGACATCTTGAGACCGAACA
AATGTCCCAAAGTGCTTGGAGTTTTGATATTTAGAAAGTAGATATCCTAA
CTTAAAATTTGAGCTATCACTTTTTAAATTTGACCAATTTGTTCTCCACT
TATGAGCTTTTAAAGTCAAAATTCACTTTTCGGAAAGTGTAAAAAACACG
TAAAAAAGAGGTATTAAATTTAAGCAATCAATTAGAAAATCACTTACAAA
TTGACTTATTTAACGAGTTTTGTGACATTAATAATTAATAAAAACACTTT
TAGAAGTAATTTTTGTTTAAAACAAGTCTAGTTTTTATAAAAATTGGCGC
TTTTGTAGATTTTTTTCAGATTTTACCAAATTTGATACCCCTTTTTTACG
TGTTTTTTACACTTTCCAAAAAGTGAATTTTGACTTTAAAAGCTCACAAG
CGGAGAACAAATTGGTCAAATTTAAAAAGTGATAGCTCAAATTTTAAGTT
AGGATATCTAATTTCTAAATATCAAAACTCCAAGCACTTTGGGACATTTG
TTCGGCCTCAAGACGTCAAGAAACATCTGAACTTTTTCGTGGGTCACCCG
GTATTATGTTTAGTTTTTTGCAAAAACCCCTGTAACTATGAGCAAGCACC
CCGTTGTTAAGATTGGCTTGAAATCAAAAATGAAACCACTGAAAACGAAA
GTAAAATTGGCCCGCACTCCAAATCCCGTAATCTTGATATAGGAGTTTAA
GTCTGTTTAGTAAATGTGCAAGAGGTAGCGAAATAATGTGTCTGACGAAG
GGTTAAATGTCTCAAGATTTAGTTTTATTACCACAGTGGCAATGTTTTCA
AAGAGGTGTAGGGACAGTTAGGGATTCATCAACAGAACATCCAATTGANT
TTCAAAGAGGTGTAGAGACAGGTAGGGATTCATCAACAGAACATCCAATT
GATGTTTTCTGTGGTAATTTTGAGTTTGAATGGCTCCCCATGAACATACC
GGGTGCGCCACAAAAAAGTTTCTCTCTTTAAAACTAATTTTCTCAAAATC
TAAAATTTTTAGAAGAACCATTCCAATTTCATTGGAAAGAAGAAAGATAA
ACTTAAATTTTGATAGGTTATTTATTAAATTTGATTCATTAGATCAAAAG
TTATGCTCAATTAAATAAAAAAGTTACTTTCTGAAAGTGCTCAAAAAGGT
TAAAAATCGACCTTCTATCAAATCAAACAGAAGCATAATTACTTGTTACA
TCAGTATTTTCGCTTTAGTCATTAAAAATGATAATTAGCTGTCTAAATGA
TCTTTTGTTGTATAATGGAAGGTTTAATTTCAACAAAAGGCAGAAAATTC
GTCGAAAAAGGCCAAAAATCCAGTAAAATTCATAAAAATACATAAAAATA
TGGGTTTTGCGGTACATCCAGTCTTACTAGACTTTATCCAATCTAAAACC
AAAAATGTGAGGAAAATTTGGGTAAAATAATTTAAGGTGATCTTGATTAA
NAAGAAAATTAGTTTTAAAGAGAGAAACTTTTTTGTGGCGCACCCGGTAG
AAAAATAAACCTTTTCCTAATCATGATGTCATATCACATAATAAAAATGT
TAGACTTTGTTTTAAAAAAACTTGAGAAGACTACTCAATCAATTTTATCT
TCACAGGCTTGCCATTGCTGGTGTATTTGCTTTGGTCACTGGATTCATTG
CAATGAAGATCACCTTTGCTTAGTAAGAAGCTTATAAGTATGTTCTTTGT
TAGCAATGACCATTTAAGTAACAGCATGGTGTGTTAAATTTATTCTTTTA
AAGACTCTTTCCGTATTTTCAATTTTTCAAGTTTAACTTGAGAGGATTAT
ATTGCTCAATATTTTAAAAGTTATCTTCCATAAAAGAAAAAACTAAAAAG
TACTGAGAGTTCCGGCCTTACGTACTAATTATATGTACAGTAATATTATA
CAGAATTATTGCCTAAAGTATTAATAATGTTAAAAAAACAAAAAATGTTA
CCATTTTGATATATATTCATTAATGATATTTTTCTCTTGTAGATAAAGTC
ATCGTCAAAGAAAATTTAATTTGTACATATTTTTTATACATAAGAATAAA
TCAAAATTGGGATATTCGTCCCTGTCAAAAAGTATCTTCTAATTTACTAG
TCCAGGGTTTTTAATTCTTATCAACATCAAACTTTCACTTTCTAAAGCTG
GGTG

Coding sequence (CDS) from alignment at sc0000002:45180..52383-

>TCONS_00000509 ID=TCONS_00000509|Name=TCONS_00000509|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0000002:45180..52383- (Clytia hemisphaerica)
GCTTGCCATTGCTGGTGTATTTGCTTTGGTCACTGGATTCATTGCAATGA
AGATCACCTTTGCTTAGCTTCCAAAAAAACAAATTTTAAAGATGGCGGCT
CTTGCTACGAGAAGCACGTTTTTACTTCAGCAACAAAGAACTCTTCCAGT
GTGCAGTGTTATTTTTTCTAGAGGATTGAAGAAGAACCAACTTTACAAGA
AGAAGAAGAAGAGAAAGATCAAGGAAAGAGACGGTAAAGAAGTCACGGTT
GAACATATTTTCTGGGACAAATATTATGCAGACAACCCATCAATTCTTGC
TGAGCGTCAAATGATAAACACCAAAAGTAGTGCAAGTGGCAGTACTGTTG
TTGAAGGAGGAGGTTCCCGTCCATTAAGTGCAAGAAAGGTTTATGACACA
CTGACCACAGGAGACAAGAGGCTTGCCATTGCTGGTGTATTTGCTTTGGT
CACTGGATTCATTGCAATGAAGATCACCTTTGCTTAGCTTCCAAAAAAAC
AAATTTTAAAGATGGCGGCTCTTGCTACGAGAAGCACGTTTTTACTTCAG
CAACAAAGAACTCTTCCAGTGTGCAGTGTTATTTTTTCTAGAGGATTGAA
GAAGAACCAACTTTACAAGAAGAAGAAGAAGAGAAAGATCAAGGAAAGAG
ACGGTAAAGAAGTCACGGTTGAACATATTTTCTGGGACAAATATTATGCA
GACAACCCATCAATTCTTGCTGAGCGTCAAATGATAAACACCAAAAGTAG
TGCAAGTGGCAGTACTGTTGTTGAAGGAGGAGGTTCCCGTCCATTAAGTG
CAAGAAAGGTTTATGACACACTGACCACAGGAGACAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000314XLOC_000314Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000509-proteinTCONS_00000509-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000509-exon-sc0000002-1575043694:52029..52383TCONS_00000509-exon-sc0000002-1575043694:52029..52383Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1575043694:45647..45727TCONS_00000509-exon-sc0000002-1575043694:45647..45727Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1575043694:45180..45341TCONS_00000509-exon-sc0000002-1575043694:45180..45341Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1510915933:52029..52383TCONS_00000509-exon-sc0000002-1510915933:52029..52383Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1510915933:45647..45727TCONS_00000509-exon-sc0000002-1510915933:45647..45727Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1510915933:45180..45341TCONS_00000509-exon-sc0000002-1510915933:45180..45341Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1491911889:52029..52383TCONS_00000509-exon-sc0000002-1491911889:52029..52383Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1491911889:45647..45727TCONS_00000509-exon-sc0000002-1491911889:45647..45727Clytia hemisphaericaexon
TCONS_00000509-exon-sc0000002-1491911889:45180..45341TCONS_00000509-exon-sc0000002-1491911889:45180..45341Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:45180..52383 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.51076e-05	21.3137	13.3584	5.69925	0	0	0	0	0	0	1.4048	0	0	0.451111	1.00864	0	0	0	0.424606	3.52731	18.0538	14.2576	3.56216	0	0	0	2.61924	1.75727	5.92728	3.94777
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top