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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000508 ID=TCONS_00000508|Name=TCONS_00000508|organism=Clytia hemisphaerica|type=transcript|length=706bp
CTGTCACTTCTCCCTCGCACACATTTTACGGCGATGTTATGTTATCTCTC
TTACTTTAAACTCGATATTATCTCCGCAGTAGTTGATCATGTGATAAGCG
GTTTGAGAGAAACcttccaaaaaaacaaattttaaagatGGCGGCTCTTG
CTACGAGAAGCACGTTTTTACTTCAGCAACAAAGAACTCTTCCAGTGTGC
AGTGTTATTTTTTCTAGAGGATTGAAGAAGAACCAACTTtacaagaagaa
gaagaagagaaagATCAAGGAAAGAGACGGTAAAGAAGTCACGGTTGAAC
ATATTTTCTGGGACAAATATTATGCAGACAACCCATCAATTCTTGCTGAG
CGTCAAATGATAAACACCAAAAGTAGTGCAAGTGGCAGTACTGTTGTTGA
AGGAGGTTCCCGTCCATTAAGTGCAAGAAAGGTTTATGACACACTGACCA
CAGGAGACAAGagGCTTGCCATTGCTGGTGTATTTGCTTTGGTCACTGGA
TTCATTGCAATGAAGATCACCTTTGCTTAGTAAGAAGCTTATAAATAAAG
TCATCgtcaaagaaaatttaatttgtacatattttttatacatAAGAATA
AATCAAAATTGGGATATTCGTCCCTGTCAAAAAGTATCTTCTAATTTACT
AGTCCAGGGTTTTTAATTCTTATCAACATCAAACTTTCACTTTCTAAAGC
TGGGTG Run BLAST on NCBI transcript from alignment at sc0000002:45180..50594- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000508 ID=TCONS_00000508|Name=TCONS_00000508|organism=Clytia hemisphaerica|type=transcript|length=5415bp|location=Sequence derived from alignment at sc0000002:45180..50594- (Clytia hemisphaerica)
CTGTCACTTCTCCCTCGCACACATTTTACGGCGATGTTATGTTATCTCTC
TTACTTTAAACTCGATATTATCTCCGCAGTAGTTGATCATGTGATAAGCG
GTTTGAGAGAAACCTTCCAAAAAAACAAATTTTAAAGATGGCGGCTCTTG
CTACGAGAAGCACGTTTTTACTTCAGCAACAAAGAACTCTTCCAGTGTGC
AGTGTTATTTTTTCTAGAGGATTGAAGAAGAACCAACTTTACAAGAAGAA
GAAGAAGAGAAAGATCAAGGAAAGAGACGGTAAAGAAGTCACGGTTGAAC
ATATTTTCTGGGACAAATATTATGCAGACAACCCATCAATTCTTGCTGAG
CGTCAAATGATAAACACCAAAAGTAGTGCAAGTGGCAGTACTGTTGTTGA
AGGAGGTTCCCGTCCATTAAGTGCAAGAAAGGTTTATGACACACTGACCA
CAGGAGACAAGAGGTTTTTTATTATTATATCTCCTTTTTTCCCTTTTTTT
AGGGCTAGGGTGGTCACGCACTCACATCAATTGACGTTAGGCGAGAGAAA
TTTTTTTCTTCACCCTTTCTTCAATAAATTGAAGATGAGAAAAAACCTAA
GCCTTAGAATCACAGATGGAAAAAAATATATGAAGGTGGGATTTTACAGC
CGTCCGTCGTGCAAGGCACGTCAGGGATTACCATAGTTGTCAATGTGTTG
TGTCAGCTTGTCAGCATTGTATTGTTATAAAGGGAAAGATGAAAGAGGTA
AGACTAGCCTAGCTTCTATAGAAGTTTAAGTTTAGACTGTGTTTATATCA
AAATCTGCAACAAAAAATGAAAGTTGTCTCTTCTTACTGATTGCTTCGTG
GCACTCTATCGCGGACTATTTATCAGTGCGTCACAAACAGCCATATATAG
GGTGCGCACTCGTCGGGATTTTTTGCGCGGAACGAGGAAGAATTTACAAA
AATGAACTTCAAGGCATTAGTACTTACCTTTAAATCATCCAAATGTGCTC
ATTCTTTTTTTTAAATCAATCAGGAATTATCAGGGAAACAAGTAAAAAAA
ACTGCATCAAGGTATCTATTTTCTTTCCAAAGATATTCATGTTTTTCGAC
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATGTTTTTCGACG
TCAAGGTGAAAACGCGATTTAGCGCTGACCACGGCACCGGAAAATTCTCG
ACCCACATTGAAACAAATGACTGTCGCTATTGAGCTGGTCCATCTTTTCA
ATCGCGGTTTTTTTAGTAAACCCAGGGTAAGATTAAGCTACAATCTATCA
CAACCTGCTTTATTTGAAAATCTACAGGCCGTCTGGAATTTCGAAAAATA
AGAAGAAATTGCGATTTTTTAACAAGATTGCGGATTTTTTCANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATACTTCATTGGTGAAAT
ATTCAATAAATTCCTGGTTTCAATTTTCAGTGGGCGTTCTTCTAGGGCTT
CGTTTATCGCGCAATTTTTGCATCACACAAACTTTCTCGGCCGCTCGTAA
TAATTATACATTGCCAAATTTGGTTCTCCATTGTCGAGTCAGGATCGATG
GTGACGTCACCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAGAGTACTTTCTTT
TACTCGCGGGATTGATGGTAACTTTTCATCTTCGTTATTTTTAAAATGAA
GCACAACCGAAAAAAAACGAAACTTCAGAAAGTTGCGTATTTCCAGTGAG
TAAACGACTCTGACAATTAACAAAATTGATGATGATGATTTTTTTTCGGT
CAGGCCAATGTCTCGCATTGGGGGTTCTAGTCTTGAGCCCAAAGCCTACG
CAGGATTGCAGCGTTTGGGTAAACGAGACAAAACTCTAAAAAAGCTGGTG
TTTTGACGCGCTTCCGTGCTCTCGAAATATCGCGGTTTGAGACGCACTGT
TTATTTAATTTCCACCAATAAGATTGCTGCATTTCATACAGCCCTTCTCT
TTGGCACCCGTGGCCTTTCAGTGCCTTGAAGCACAGGCGGCTGTAAAATC
TCTCCCTTCATAAAACTTCTTTTATTTGTTTCAATCCATGATCCTGAGGA
GTACACTATATTTCTCATCCTCAATTCTCCAAAGAAAGCGGAAATTTAAT
TAATGCGAGAGTTAGATTGTCAACAAAAAGTGCCATTAAAAATCATTGAA
TAATAGAAGAGCTTAAAATCTCAAATATTTTCATTTTGAAGAATTGCTAC
AAAAAAGTGAAACATGGAAGAGTCATTGAAATGGGGGATTTGGAAAACTT
TCTATATACCGGGTGACCCACGAAAAAGTTCAGACGTTTCCTGACATCTT
GAGACCGAACAAATGTCCCAAAGTGCTTGGAGTTTTGATATTTAGAAAGT
AGATATCCTAACTTAAAATTTGAGCTATCACTTTTTAAATTTGACCAATT
TGTTCTCCACTTATGAGCTTTTAAAGTCAAAATTCACTTTTCGGAAAGTG
TAAAAAACACGTAAAAAAGAGGTATTAAATTTAAGCAATCAATTAGAAAA
TCACTTACAAATTGACTTATTTAACGAGTTTTGTGACATTAATAATTAAT
AAAAACACTTTTAGAAGTAATTTTTGTTTAAAACAAGTCTAGTTTTTATA
AAAATTGGCGCTTTTGTAGATTTTTTTCAGATTTTACCAAATTTGATACC
CCTTTTTTACGTGTTTTTTACACTTTCCAAAAAGTGAATTTTGACTTTAA
AAGCTCACAAGCGGAGAACAAATTGGTCAAATTTAAAAAGTGATAGCTCA
AATTTTAAGTTAGGATATCTAATTTCTAAATATCAAAACTCCAAGCACTT
TGGGACATTTGTTCGGCCTCAAGACGTCAAGAAACATCTGAACTTTTTCG
TGGGTCACCCGGTATTATGTTTAGTTTTTTGCAAAAACCCCTGTAACTAT
GAGCAAGCACCCCGTTGTTAAGATTGGCTTGAAATCAAAAATGAAACCAC
TGAAAACGAAAGTAAAATTGGCCCGCACTCCAAATCCCGTAATCTTGATA
TAGGAGTTTAAGTCTGTTTAGTAAATGTGCAAGAGGTAGCGAAATAATGT
GTCTGACGAAGGGTTAAATGTCTCAAGATTTAGTTTTATTACCACAGTGG
CAATGTTTTCAAAGAGGTGTAGGGACAGTTAGGGATTCATCAACAGAACA
TCCAATTGANTTTCAAAGAGGTGTAGAGACAGGTAGGGATTCATCAACAG
AACATCCAATTGATGTTTTCTGTGGTAATTTTGAGTTTGAATGGCTCCCC
ATGAACATACCGGGTGCGCCACAAAAAAGTTTCTCTCTTTAAAACTAATT
TTCTCAAAATCTAAAATTTTTAGAAGAACCATTCCAATTTCATTGGAAAG
AAGAAAGATAAACTTAAATTTTGATAGGTTATTTATTAAATTTGATTCAT
TAGATCAAAAGTTATGCTCAATTAAATAAAAAAGTTACTTTCTGAAAGTG
CTCAAAAAGGTTAAAAATCGACCTTCTATCAAATCAAACAGAAGCATAAT
TACTTGTTACATCAGTATTTTCGCTTTAGTCATTAAAAATGATAATTAGC
TGTCTAAATGATCTTTTGTTGTATAATGGAAGGTTTAATTTCAACAAAAG
GCAGAAAATTCGTCGAAAAAGGCCAAAAATCCAGTAAAATTCATAAAAAT
ACATAAAAATATGGGTTTTGCGGTACATCCAGTCTTACTAGACTTTATCC
AATCTAAAACCAAAAATGTGAGGAAAATTTGGGTAAAATAATTTAAGGTG
ATCTTGATTAANAAGAAAATTAGTTTTAAAGAGAGAAACTTTTTTGTGGC
GCACCCGGTAGAAAAATAAACCTTTTCCTAATCATGATGTCATATCACAT
AATAAAAATGTTAGACTTTGTTTTAAAAAAACTTGAGAAGACTACTCAAT
CAATTTTATCTTCACAGGCTTGCCATTGCTGGTGTATTTGCTTTGGTCAC
TGGATTCATTGCAATGAAGATCACCTTTGCTTAGTAAGAAGCTTATAAGT
ATGTTCTTTGTTAGCAATGACCATTTAAGTAACAGCATGGTGTGTTAAAT
TTATTCTTTTAAAGACTCTTTCCGTATTTTCAATTTTTCAAGTTTAACTT
GAGAGGATTATATTGCTCAATATTTTAAAAGTTATCTTCCATAAAAGAAA
AAACTAAAAAGTACTGAGAGTTCCGGCCTTACGTACTAATTATATGTACA
GTAATATTATACAGAATTATTGCCTAAAGTATTAATAATGTTAAAAAAAC
AAAAAATGTTACCATTTTGATATATATTCATTAATGATATTTTTCTCTTG
TAGATAAAGTCATCGTCAAAGAAAATTTAATTTGTACATATTTTTTATAC
ATAAGAATAAATCAAAATTGGGATATTCGTCCCTGTCAAAAAGTATCTTC
TAATTTACTAGTCCAGGGTTTTTAATTCTTATCAACATCAAACTTTCACT
TTCTAAAGCTGGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000508-exon-sc0000002-1575043694:50132..50594 | TCONS_00000508-exon-sc0000002-1575043694:50132..50594 | Clytia hemisphaerica | exon |
| TCONS_00000508-exon-sc0000002-1575043694:45647..45727 | TCONS_00000508-exon-sc0000002-1575043694:45647..45727 | Clytia hemisphaerica | exon |
| TCONS_00000508-exon-sc0000002-1575043694:45180..45341 | TCONS_00000508-exon-sc0000002-1575043694:45180..45341 | Clytia hemisphaerica | exon |
| TCONS_00000508-exon-sc0000002-1510915933:50132..50594 | TCONS_00000508-exon-sc0000002-1510915933:50132..50594 | Clytia hemisphaerica | exon |
| TCONS_00000508-exon-sc0000002-1510915933:45647..45727 | TCONS_00000508-exon-sc0000002-1510915933:45647..45727 | Clytia hemisphaerica | exon |
| TCONS_00000508-exon-sc0000002-1510915933:45180..45341 | TCONS_00000508-exon-sc0000002-1510915933:45180..45341 | Clytia hemisphaerica | exon |
| TCONS_00000508-exon-sc0000002-1491911889:50132..50594 | TCONS_00000508-exon-sc0000002-1491911889:50132..50594 | Clytia hemisphaerica | exon |
| TCONS_00000508-exon-sc0000002-1491911889:45647..45727 | TCONS_00000508-exon-sc0000002-1491911889:45647..45727 | Clytia hemisphaerica | exon |
| TCONS_00000508-exon-sc0000002-1491911889:45180..45341 | TCONS_00000508-exon-sc0000002-1491911889:45180..45341 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:45180..50594 - |
Blast
The following BLAST results are available for this feature:
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