Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00000508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000508
Unique NameTCONS_00000508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length706

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000508 ID=TCONS_00000508|Name=TCONS_00000508|organism=Clytia hemisphaerica|type=transcript|length=706bp
CTGTCACTTCTCCCTCGCACACATTTTACGGCGATGTTATGTTATCTCTC
TTACTTTAAACTCGATATTATCTCCGCAGTAGTTGATCATGTGATAAGCG
GTTTGAGAGAAACcttccaaaaaaacaaattttaaagatGGCGGCTCTTG
CTACGAGAAGCACGTTTTTACTTCAGCAACAAAGAACTCTTCCAGTGTGC
AGTGTTATTTTTTCTAGAGGATTGAAGAAGAACCAACTTtacaagaagaa
gaagaagagaaagATCAAGGAAAGAGACGGTAAAGAAGTCACGGTTGAAC
ATATTTTCTGGGACAAATATTATGCAGACAACCCATCAATTCTTGCTGAG
CGTCAAATGATAAACACCAAAAGTAGTGCAAGTGGCAGTACTGTTGTTGA
AGGAGGTTCCCGTCCATTAAGTGCAAGAAAGGTTTATGACACACTGACCA
CAGGAGACAAGagGCTTGCCATTGCTGGTGTATTTGCTTTGGTCACTGGA
TTCATTGCAATGAAGATCACCTTTGCTTAGTAAGAAGCTTATAAATAAAG
TCATCgtcaaagaaaatttaatttgtacatattttttatacatAAGAATA
AATCAAAATTGGGATATTCGTCCCTGTCAAAAAGTATCTTCTAATTTACT
AGTCCAGGGTTTTTAATTCTTATCAACATCAAACTTTCACTTTCTAAAGC
TGGGTG
Run BLAST on NCBI

transcript from alignment at sc0000002:45180..50594-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000508 ID=TCONS_00000508|Name=TCONS_00000508|organism=Clytia hemisphaerica|type=transcript|length=5415bp|location=Sequence derived from alignment at sc0000002:45180..50594- (Clytia hemisphaerica)
CTGTCACTTCTCCCTCGCACACATTTTACGGCGATGTTATGTTATCTCTC TTACTTTAAACTCGATATTATCTCCGCAGTAGTTGATCATGTGATAAGCG GTTTGAGAGAAACCTTCCAAAAAAACAAATTTTAAAGATGGCGGCTCTTG CTACGAGAAGCACGTTTTTACTTCAGCAACAAAGAACTCTTCCAGTGTGC AGTGTTATTTTTTCTAGAGGATTGAAGAAGAACCAACTTTACAAGAAGAA GAAGAAGAGAAAGATCAAGGAAAGAGACGGTAAAGAAGTCACGGTTGAAC ATATTTTCTGGGACAAATATTATGCAGACAACCCATCAATTCTTGCTGAG CGTCAAATGATAAACACCAAAAGTAGTGCAAGTGGCAGTACTGTTGTTGA AGGAGGTTCCCGTCCATTAAGTGCAAGAAAGGTTTATGACACACTGACCA CAGGAGACAAGAGGTTTTTTATTATTATATCTCCTTTTTTCCCTTTTTTT AGGGCTAGGGTGGTCACGCACTCACATCAATTGACGTTAGGCGAGAGAAA TTTTTTTCTTCACCCTTTCTTCAATAAATTGAAGATGAGAAAAAACCTAA GCCTTAGAATCACAGATGGAAAAAAATATATGAAGGTGGGATTTTACAGC CGTCCGTCGTGCAAGGCACGTCAGGGATTACCATAGTTGTCAATGTGTTG TGTCAGCTTGTCAGCATTGTATTGTTATAAAGGGAAAGATGAAAGAGGTA AGACTAGCCTAGCTTCTATAGAAGTTTAAGTTTAGACTGTGTTTATATCA AAATCTGCAACAAAAAATGAAAGTTGTCTCTTCTTACTGATTGCTTCGTG GCACTCTATCGCGGACTATTTATCAGTGCGTCACAAACAGCCATATATAG GGTGCGCACTCGTCGGGATTTTTTGCGCGGAACGAGGAAGAATTTACAAA AATGAACTTCAAGGCATTAGTACTTACCTTTAAATCATCCAAATGTGCTC ATTCTTTTTTTTAAATCAATCAGGAATTATCAGGGAAACAAGTAAAAAAA ACTGCATCAAGGTATCTATTTTCTTTCCAAAGATATTCATGTTTTTCGAC GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATGTTTTTCGACG TCAAGGTGAAAACGCGATTTAGCGCTGACCACGGCACCGGAAAATTCTCG ACCCACATTGAAACAAATGACTGTCGCTATTGAGCTGGTCCATCTTTTCA ATCGCGGTTTTTTTAGTAAACCCAGGGTAAGATTAAGCTACAATCTATCA CAACCTGCTTTATTTGAAAATCTACAGGCCGTCTGGAATTTCGAAAAATA AGAAGAAATTGCGATTTTTTAACAAGATTGCGGATTTTTTCANNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATACTTCATTGGTGAAAT ATTCAATAAATTCCTGGTTTCAATTTTCAGTGGGCGTTCTTCTAGGGCTT CGTTTATCGCGCAATTTTTGCATCACACAAACTTTCTCGGCCGCTCGTAA TAATTATACATTGCCAAATTTGGTTCTCCATTGTCGAGTCAGGATCGATG GTGACGTCACCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAGAGTACTTTCTTT TACTCGCGGGATTGATGGTAACTTTTCATCTTCGTTATTTTTAAAATGAA GCACAACCGAAAAAAAACGAAACTTCAGAAAGTTGCGTATTTCCAGTGAG TAAACGACTCTGACAATTAACAAAATTGATGATGATGATTTTTTTTCGGT CAGGCCAATGTCTCGCATTGGGGGTTCTAGTCTTGAGCCCAAAGCCTACG CAGGATTGCAGCGTTTGGGTAAACGAGACAAAACTCTAAAAAAGCTGGTG TTTTGACGCGCTTCCGTGCTCTCGAAATATCGCGGTTTGAGACGCACTGT TTATTTAATTTCCACCAATAAGATTGCTGCATTTCATACAGCCCTTCTCT TTGGCACCCGTGGCCTTTCAGTGCCTTGAAGCACAGGCGGCTGTAAAATC TCTCCCTTCATAAAACTTCTTTTATTTGTTTCAATCCATGATCCTGAGGA GTACACTATATTTCTCATCCTCAATTCTCCAAAGAAAGCGGAAATTTAAT TAATGCGAGAGTTAGATTGTCAACAAAAAGTGCCATTAAAAATCATTGAA TAATAGAAGAGCTTAAAATCTCAAATATTTTCATTTTGAAGAATTGCTAC AAAAAAGTGAAACATGGAAGAGTCATTGAAATGGGGGATTTGGAAAACTT TCTATATACCGGGTGACCCACGAAAAAGTTCAGACGTTTCCTGACATCTT GAGACCGAACAAATGTCCCAAAGTGCTTGGAGTTTTGATATTTAGAAAGT AGATATCCTAACTTAAAATTTGAGCTATCACTTTTTAAATTTGACCAATT TGTTCTCCACTTATGAGCTTTTAAAGTCAAAATTCACTTTTCGGAAAGTG TAAAAAACACGTAAAAAAGAGGTATTAAATTTAAGCAATCAATTAGAAAA TCACTTACAAATTGACTTATTTAACGAGTTTTGTGACATTAATAATTAAT AAAAACACTTTTAGAAGTAATTTTTGTTTAAAACAAGTCTAGTTTTTATA AAAATTGGCGCTTTTGTAGATTTTTTTCAGATTTTACCAAATTTGATACC CCTTTTTTACGTGTTTTTTACACTTTCCAAAAAGTGAATTTTGACTTTAA AAGCTCACAAGCGGAGAACAAATTGGTCAAATTTAAAAAGTGATAGCTCA AATTTTAAGTTAGGATATCTAATTTCTAAATATCAAAACTCCAAGCACTT TGGGACATTTGTTCGGCCTCAAGACGTCAAGAAACATCTGAACTTTTTCG TGGGTCACCCGGTATTATGTTTAGTTTTTTGCAAAAACCCCTGTAACTAT GAGCAAGCACCCCGTTGTTAAGATTGGCTTGAAATCAAAAATGAAACCAC TGAAAACGAAAGTAAAATTGGCCCGCACTCCAAATCCCGTAATCTTGATA TAGGAGTTTAAGTCTGTTTAGTAAATGTGCAAGAGGTAGCGAAATAATGT GTCTGACGAAGGGTTAAATGTCTCAAGATTTAGTTTTATTACCACAGTGG CAATGTTTTCAAAGAGGTGTAGGGACAGTTAGGGATTCATCAACAGAACA TCCAATTGANTTTCAAAGAGGTGTAGAGACAGGTAGGGATTCATCAACAG AACATCCAATTGATGTTTTCTGTGGTAATTTTGAGTTTGAATGGCTCCCC ATGAACATACCGGGTGCGCCACAAAAAAGTTTCTCTCTTTAAAACTAATT TTCTCAAAATCTAAAATTTTTAGAAGAACCATTCCAATTTCATTGGAAAG AAGAAAGATAAACTTAAATTTTGATAGGTTATTTATTAAATTTGATTCAT TAGATCAAAAGTTATGCTCAATTAAATAAAAAAGTTACTTTCTGAAAGTG CTCAAAAAGGTTAAAAATCGACCTTCTATCAAATCAAACAGAAGCATAAT TACTTGTTACATCAGTATTTTCGCTTTAGTCATTAAAAATGATAATTAGC TGTCTAAATGATCTTTTGTTGTATAATGGAAGGTTTAATTTCAACAAAAG GCAGAAAATTCGTCGAAAAAGGCCAAAAATCCAGTAAAATTCATAAAAAT ACATAAAAATATGGGTTTTGCGGTACATCCAGTCTTACTAGACTTTATCC AATCTAAAACCAAAAATGTGAGGAAAATTTGGGTAAAATAATTTAAGGTG ATCTTGATTAANAAGAAAATTAGTTTTAAAGAGAGAAACTTTTTTGTGGC GCACCCGGTAGAAAAATAAACCTTTTCCTAATCATGATGTCATATCACAT AATAAAAATGTTAGACTTTGTTTTAAAAAAACTTGAGAAGACTACTCAAT CAATTTTATCTTCACAGGCTTGCCATTGCTGGTGTATTTGCTTTGGTCAC TGGATTCATTGCAATGAAGATCACCTTTGCTTAGTAAGAAGCTTATAAGT ATGTTCTTTGTTAGCAATGACCATTTAAGTAACAGCATGGTGTGTTAAAT TTATTCTTTTAAAGACTCTTTCCGTATTTTCAATTTTTCAAGTTTAACTT GAGAGGATTATATTGCTCAATATTTTAAAAGTTATCTTCCATAAAAGAAA AAACTAAAAAGTACTGAGAGTTCCGGCCTTACGTACTAATTATATGTACA GTAATATTATACAGAATTATTGCCTAAAGTATTAATAATGTTAAAAAAAC AAAAAATGTTACCATTTTGATATATATTCATTAATGATATTTTTCTCTTG TAGATAAAGTCATCGTCAAAGAAAATTTAATTTGTACATATTTTTTATAC ATAAGAATAAATCAAAATTGGGATATTCGTCCCTGTCAAAAAGTATCTTC TAATTTACTAGTCCAGGGTTTTTAATTCTTATCAACATCAAACTTTCACT TTCTAAAGCTGGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000314XLOC_000314Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000508-exon-sc0000002-1575043694:50132..50594TCONS_00000508-exon-sc0000002-1575043694:50132..50594Clytia hemisphaericaexon
TCONS_00000508-exon-sc0000002-1575043694:45647..45727TCONS_00000508-exon-sc0000002-1575043694:45647..45727Clytia hemisphaericaexon
TCONS_00000508-exon-sc0000002-1575043694:45180..45341TCONS_00000508-exon-sc0000002-1575043694:45180..45341Clytia hemisphaericaexon
TCONS_00000508-exon-sc0000002-1510915933:50132..50594TCONS_00000508-exon-sc0000002-1510915933:50132..50594Clytia hemisphaericaexon
TCONS_00000508-exon-sc0000002-1510915933:45647..45727TCONS_00000508-exon-sc0000002-1510915933:45647..45727Clytia hemisphaericaexon
TCONS_00000508-exon-sc0000002-1510915933:45180..45341TCONS_00000508-exon-sc0000002-1510915933:45180..45341Clytia hemisphaericaexon
TCONS_00000508-exon-sc0000002-1491911889:50132..50594TCONS_00000508-exon-sc0000002-1491911889:50132..50594Clytia hemisphaericaexon
TCONS_00000508-exon-sc0000002-1491911889:45647..45727TCONS_00000508-exon-sc0000002-1491911889:45647..45727Clytia hemisphaericaexon
TCONS_00000508-exon-sc0000002-1491911889:45180..45341TCONS_00000508-exon-sc0000002-1491911889:45180..45341Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:45180..50594 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
177.817 160.755 196.132 211.728 74.8942 61.4645 33.7732 32.9069 32.9643 28.7609 22.3326 24.8165 18.8476 24.0028 20.9368 22.5761 51.7656 37.5141 3.8412 6.21202 24.6574 31.0559 68.1735 53.1295 26.8246 28.2495 13.5131 8.6529 20.9522 24.5175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top