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TCONS_00000491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000491
Unique NameTCONS_00000491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000491 ID=TCONS_00000491|Name=TCONS_00000491|organism=Clytia hemisphaerica|type=transcript|length=286bp
ATAATACTACTGCAGACTGTCCAACTTCGTAAACGATGTTCTGCTCTTTG
AATAAATTTGCTTTAATTTGTTTCAGCATGGCCTCATGTATAGCAGCATG
CTTTGGTGTTGTACTTGAATATCCCCATGGACTCATCCAGAGTTGACCAA
AAACGTGGACATCCATGTAAGATACCAGACGACGTCGTAATTTGTACAGG
TAGCGTGCTAAAGACAGCGTTTCTTGTTCGGAAAAAGGACGTGGCCCGCT
GTATATGTTATCACATGGATCACCAGAACCACCGTA
Run BLAST on NCBI

transcript from alignment at sc0000002:1546161..1546505+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000491 ID=TCONS_00000491|Name=TCONS_00000491|organism=Clytia hemisphaerica|type=transcript|length=345bp|location=Sequence derived from alignment at sc0000002:1546161..1546505+ (Clytia hemisphaerica)
ATAATACTACTGCAGACTGTCCAACTTCGTAAACGATGTTCTGCTCTTTG AATAAATTTGCTTTAATTTGTTTCAGCATGGCCTCATGTATAGCAGCATG CTTTGGTGTTGTACTTGAATATCCCCATGGACTCATCCAGAGTTGACCAA AAACGTGGACATCCATGTAAGATACCAGACGACGTCGTAATTTGTACAGG TAGCGTGCNAAACGTGGACGTCCATGTAAGATACCAGACGACGTCGTAAT TTGTATAGGTAGCGTGCTAAAGACAGCGTTTCTTGTTCGGAAAAAGGACG TGGCCCGCTGTATATGTTATCACATGGATCACCAGAACCACCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000308XLOC_000308Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000491-exon-sc0000002-1491911889:1546161..1546359TCONS_00000491-exon-sc0000002-1491911889:1546161..1546359Clytia hemisphaericaexon
TCONS_00000491-exon-sc0000002-1510915933:1546161..1546359TCONS_00000491-exon-sc0000002-1510915933:1546161..1546359Clytia hemisphaericaexon
TCONS_00000491-exon-sc0000002-1575043694:1546161..1546359TCONS_00000491-exon-sc0000002-1575043694:1546161..1546359Clytia hemisphaericaexon
TCONS_00000491-exon-sc0000002-1491911889:1546419..1546505TCONS_00000491-exon-sc0000002-1491911889:1546419..1546505Clytia hemisphaericaexon
TCONS_00000491-exon-sc0000002-1510915933:1546419..1546505TCONS_00000491-exon-sc0000002-1510915933:1546419..1546505Clytia hemisphaericaexon
TCONS_00000491-exon-sc0000002-1575043694:1546419..1546505TCONS_00000491-exon-sc0000002-1575043694:1546419..1546505Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1546161..1546505 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.241409 0 0 0 3.26995 1.44228 18.8913 7.59177 26.9388 18.4209 24.324 27.2551 56.1724 65.2774 6.41072 19.6217 35.8273 29.5742 81.5115 123.488 19.3671 16.8317 22.3716 22.9394 11.7697 10.1887 1.23239 11.1498 133.151 153.272
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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