|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000480 ID=TCONS_00000480|Name=TCONS_00000480|organism=Clytia hemisphaerica|type=transcript|length=3123bpRun BLAST on NCBI protein sequence of TCONS_00000480-protein >TCONS_00000480-protein ID=TCONS_00000480-protein|Name=TCONS_00000480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=705bp MEKTYMTPLVTKWKDAFGPTSSTMSIVVELLCYTTCYRQGGDSEKFARRARun BLAST on NCBI transcript from alignment at sc0000002:1410311..1421246+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000480 ID=TCONS_00000480|Name=TCONS_00000480|organism=Clytia hemisphaerica|type=transcript|length=10936bp|location=Sequence derived from alignment at sc0000002:1410311..1421246+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:1410311..1421246+ >TCONS_00000480 ID=TCONS_00000480|Name=TCONS_00000480|organism=Clytia hemisphaerica|type=CDS|length=19062bp|location=Sequence derived from alignment at sc0000002:1410311..1421246+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000480 vs. Swiss-Prot (Human)
Match: SMAD4 (Mothers against decapentaplegic homolog 4 OS=Homo sapiens GN=SMAD4 PE=1 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 1.258e-43 Identity = 89/133 (66.92%), Postives = 108/133 (81.20%), Query Frame = 3
Query: 204 PTS--STMSIVVELLCYTTCYRQGGDSEKFARRAIESLVKKLRKKADELENLVIAIKSKGRQPSKCVTIPRTLDGRLQVCERKGFPHVIYSRLFRWPDIHKMELRHLDTCQFAFDLKYDVVCVNPYHYERISS 596
PTS + +SIV L+C+ RQGG+SE FA+RAIESLVKKL++K DEL++L+ AI + G PSKCVTI RTLDGRLQV RKGFPHVIY+RL+RWPD+HK EL+H+ CQ+AFDLK D VCVNPYHYER+ S
Sbjct: 10 PTSNDACLSIVHSLMCH----RQGGESETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHKNELKHVKYCQYAFDLKCDSVCVNPYHYERVVS 138 HSP 2 Score: 124.405 bits (311), Expect = 1.740e-29 Identity = 64/107 (59.81%), Postives = 80/107 (74.77%), Query Frame = 3
Query: 888 FTRRAIESLVKKLKKRYNELDALIAAIVSQGRIETKCATVQRTLDGRLQVGERKDFPHVTYTRLWRWPNVHKLELCSIDSCLHGFDRKGGNICVNPYHYDRVKPPEL 1208
F +RAIESLVKKLK++ +ELD+LI AI + G +KC T+QRTLDGRLQV RK FPHV Y RLWRWP++HK EL + C + FD K ++CVNPYHY+RV P +
Sbjct: 35 FAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHKNELKHVKYCQYAFDLKCDSVCVNPYHYERVVSPGI 141 The following BLAST results are available for this feature:
BLAST of TCONS_00000480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.