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TCONS_00000479 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000479
Unique NameTCONS_00000479
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1019

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000479 ID=TCONS_00000479|Name=TCONS_00000479|organism=Clytia hemisphaerica|type=transcript|length=1019bp
AAAGATTGTTTGGGTTATGGAGGTTCGAGGTATAGACTCCACTCTATAGC
ATCAAGCTCGTCGAATATACGAAATCTTACGTTTATACTACACCGATAGA
AACAATGAAACAATGTTTCGCGAGTACAGACTTGACGTCAAGAACAGACT
CAATATACCATACCAAAAACAAGCACGTGACATGAAGAAATTGGAGAAAG
CATTATCAGCTGAAGAATACAATGCAGCTATTGTTGGATCGTCACGTGAT
GAAAGAATGCAACGGTTGGAAGATGCGTTCAAATCATTATGTGAAGACGA
ATATGCACGTGTTATAAAACGATTGAACACTTATTGTTGATTGGTTAGAT
TTTGGTGAGCTGTGAATTTGATTGGTCATTTCGGACGAACTCTTTGGAtg
aatttggaaatttgataattttatggTAATTCTGAAATTGCCAAATTTTG
ATGTGAATATATCTGGACAGGTAAAGTTGATGTGTGGCATGAACTTCTAA
AACGAtatttatttgataatttttaaaatattttttttactagactaaaa
ttttcagttttctttTGTCTTTGGATTGATTTCAACATTGGTAAATTTCC
TTTGACATAATTTGACAGaaggataaaattttttggTACCCGATAAAAAT
CCAATTTAATCTTTTTGCATATTGGGATTTGAAAGGTTTTTTATAACTCG
ATTGGTCATGATATCCAATAAAAAGCAACGAAGTTTCAAGAATTGTATTT
TAAAGACATCTATAGGGTAGAAATATTctatacccagctggcacacaacg
tcgtttcaacgttcatctaacgttcacaacgtccatataacgttagatga
acgttgtagcaacgttgtgtgccagctgggtaaatTTGAGTTATTGTCAG
AGaaatatttgacaaaatataTTTGAACTTCATAGTCACTGAAATTACTT
TTCCCTTTAACTTTATGAATATGATAGGTCAAATCTCCAATTTTAAGAGA
ACTGATTTTCTGTGAGAAC
Run BLAST on NCBI

transcript from alignment at sc0000002:1396452..1400203+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000479 ID=TCONS_00000479|Name=TCONS_00000479|organism=Clytia hemisphaerica|type=transcript|length=3752bp|location=Sequence derived from alignment at sc0000002:1396452..1400203+ (Clytia hemisphaerica)
AAAGATTGTTTGGGTTATGGAGGTTCGAGGTATAGACTCCACTCTATAGG TTGGTTTTAAAAATATGGTGGTTTGGTTTTTCAAAGCTTTGGGATCGTAT AGCCCAAAGAATGATGTTTGGACGTACCATACCATTTTTCATATGAACAA ACTTTGAGACccaattacacattttttataagaacaaactatataagaac ataaggcttcgatggccaaaatattaaaaacaaggtaagagcattttaag gtcttgcggactctaaaacactcgatttctagagaaaaataatcaaaaaa taagaacatgttaagaacatcctaaggctcaaaaaattttggatgttcta taAAAAAGCGTATCTATCGAAAACAAGCATTATATCATCACGTGACCGAT TTAAATTTTATGGCCTGTGTAAtgatttatttctattttgttatTGATAT TTTGCGATTGATATTTTGCGATTAAGAAAAGTTGAATAAAGCCGACATGC TCAGGATAGCGTGTTGGTGGTTTGGAAGAACGCCAGGTTTTTGCTAATCA TTTTATTGCCATTAGCACATTCCATCATTGCTTTATATCCTAGCACCAAC AAGACTTTATGATTGCTggacgttttttataagaaagttttttaagcCTT TGGGTGTCCTTAtttctttgagttttaagcctcaaaatgttcttaacatg ttcttattttccccattttgtgagtatttttgtccattttcctaagaaat taagTGTTTCATggtcctcaaagccttaaaatgttctcaactttatattt tggccatcgagtacttatgttcttatatagtttgatCTTATAGAAAAGAG AGTATTCTAGTGTATTTTCCTTAGGAATTGCACGTTTTAGAGAATGCAAA GGCTTTTTGGCATCAAAAAGCCTCGTATGTTCTTATCTAGTTTGCTCTTT AAAAAACGTTTCGACGTAAGATTACCTTTGCTTGactaaatattctttta gcGAAATTCAGTTATGCTGGATTGTTGATAACCATCGCGTTTTTCTCTGT TTGTTTTTCAGCATCAAGCTCGTCGAATATACGAAATCTTACGTTTATAC TACACCGATAGAAACAATGAAACAATGTTTCGCGAGTACAGACTTGACGT CAAGAACAGACTCAATATACCATACCAAGTAAGTTGATTTTCAAAATCTA CCGGATGACCCCacgaaaaaaaaccctttttaagtattttttacaCTCCA ACAGACTAAAGCTCATAAATTTGGCACTAGGGGGTCAAATTCAAATAAGC AACagctcaaattttaaattaGGATATCTACATTCCTTATATTGAAATTC TTAAGCACtttaaaacatttgttttgTCCTTgagacgtcgagaaacgtcc gaactctttcgtgggtcacccggtacttTTTACCCGAAGTTCTTTAACCA CCTTAGAAATGAAGTGGACTCTTGCTCAATAGAACTTATACTATACGGAT AGTTGCCTCATTATCTGTCAAATATAGTGTGGATAATTGTGTTAACTACT CTTAAACATTTTCTTTACACTGTCGAAAGCAGTGACAATAAAATGCTTGT AAAAGACTGTTATTCAGATAGTagttagactagagtctactgaactttgc ttttttatatttttttatgaagatgAGTAGTAGACTTGTAGTAGTAGCAC TtgacgaggtcgccattttttaaagaaatgNctgaactttgcttttttat atttttttatgaagatgAGTAGTAGACTTGTAGTAGTAGCACTtgacgag gtcgccattttttaaagaaatgttttgactgttttacagtccgcctaagc aaaagcatattgcCATATATACTACCAGACCACTTAATCGCACCATCCag actataaaaaagctttatgTGGACCCCAGACTAAGTGGAAAGACTTTACT TATTCTCTGCCCTCCTTAAGgtcaaatttttataaaaactttccataatt cgaatgtATTTGTAATTTGAATGactttaattttacttttgagTTCGAAT AAGCAAAAGTTAACGGTGTGAATTTTTAGCTGTGATATGCCATCAGGAAT ACAAGGTTAGACATATTcctaagtatttcttttcagtgAAGAAAGTTTAA CCGACTTGCTTTTTATGTTTAAAGCTTAATATAGAATTTACCTATATCTG ACACGTGTATAGTGTGTAGTTGGTCCCTTATTGACCTCCCCGGTACTTTT GGCAAAATGTACCTCAACTGACAAAACTGCCACTTATTCAGTACTTTAGT AATAGCTGAGTATGCCATATGATAGCCAGAATCTCCCCTGACTATATTGA TTTTAGCTATTGTTTAAGGTAAaagtggcttttaaaattttttattgagt TGAAAAATTGAGGGCTTTTCTGCATATTGTCACAAAATCAGCACCCCTTT CCTCATCTTTTATTTAATAAACAATTTTCCCTTCTATCCTCTCGGCCTTT GTGATATTTGGAGAGGTTCCTCCCCCATCCACCTTTAGAAAAGGAGAGTG CAGAATTAAAAGTTACTTTATATATATTTGGTGTTAATTCCTGGATAGCT ATTTATAGCAAATCTTAATGTAACAGCGGTAGTAAGCAAAAAAGAAAGTC TCACTTTTTACGAAAAGAAAAGTAATACAGGAGTTATAAACCAGGTCAGC CCAAAAAAAAGGATACGATGAATCAAAATATAAGACAGAATAGCAAGAAG GATGCGATGATGACAAGTACTCTGATAGGTGGTTCGTTTTTTTAAATagt tattttggaaaattctcttgatttcaaaaagaaataatttccaCGTATAA TGGCCAAGAATTACTTCACAAAAGACCACACCCTGTATCGTTTCTATAGA AACAAGCACGTGACATGAAGAAATTGGAGAAAGCATTATCAGCTGAAGAA TACAATGCAGCTATTGTTGGATCGTCACGTGATGAAAGAATGCAACGGTT GGAAGATGCGTTCAAATCATTATGTGAAGACGAATATGCACGTGTTATAA AACGATTGAACACTTATTGTTGATTGGTTAGATTTTGGTGAGCTGTGAAT TTGATTGGTCATTTCGGACGAACTCTTTGGAtgaatttggaaatttgata attttatggTAATTCTGAAATTGCCAAATTTTGATGTGAATATATCTGGA CAGGTAAAGTTGATGTGTGGCATGAACTTCTAAAACGAtatttatttgat aatttttaaaatattttttttactagactaaaattttcagttttctttTG TCTTTGGATTGATTTCAACATTGGTAAATTTCCTTTGACATAATTTGACA GaaggataaaattttttggTACCCGATAAAAATCCAATTTAATCTTTTTG CATATTGGGATTTGAAAGGTTTTTTATAACTCGATTGGTCATGATATCCA ATAAAAAGCAACGAAGTTTCAAGAATTGTATTTTAAAGACATCTATAGGG TAGAAATATTctatacccagctggcacacaacgtcgtttcaacgttcatc taacgttcacaacgtccatataacgttagatgaacgttgtagcaacgttg tgtgccagctgggtaaatTTGAGTTATTGTCAGAGaaatatttgacaaaa tataTTTGAACTTCATAGTCACTGAAATTACTTTTCCCTTTAACTTTATG AATATGATAGGTCAAATCTCCAATTTTAAGAGAACTGATTTTCTGTGAGA AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000302XLOC_000302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000479-exon-sc0000002-1491911889:1396452..1396500TCONS_00000479-exon-sc0000002-1491911889:1396452..1396500Clytia hemisphaericaexon
TCONS_00000479-exon-sc0000002-1510915933:1396452..1396500TCONS_00000479-exon-sc0000002-1510915933:1396452..1396500Clytia hemisphaericaexon
TCONS_00000479-exon-sc0000002-1575043694:1396452..1396500TCONS_00000479-exon-sc0000002-1575043694:1396452..1396500Clytia hemisphaericaexon
TCONS_00000479-exon-sc0000002-1491911889:1397513..1397629TCONS_00000479-exon-sc0000002-1491911889:1397513..1397629Clytia hemisphaericaexon
TCONS_00000479-exon-sc0000002-1510915933:1397513..1397629TCONS_00000479-exon-sc0000002-1510915933:1397513..1397629Clytia hemisphaericaexon
TCONS_00000479-exon-sc0000002-1575043694:1397513..1397629TCONS_00000479-exon-sc0000002-1575043694:1397513..1397629Clytia hemisphaericaexon
TCONS_00000479-exon-sc0000002-1491911889:1399351..1400203TCONS_00000479-exon-sc0000002-1491911889:1399351..1400203Clytia hemisphaericaexon
TCONS_00000479-exon-sc0000002-1510915933:1399351..1400203TCONS_00000479-exon-sc0000002-1510915933:1399351..1400203Clytia hemisphaericaexon
TCONS_00000479-exon-sc0000002-1575043694:1399351..1400203TCONS_00000479-exon-sc0000002-1575043694:1399351..1400203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1396452..1400203 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 2.86631 0.67648 0.985525 0.445725 0.82133 1.06479 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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