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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000467 ID=TCONS_00000467|Name=TCONS_00000467|organism=Clytia hemisphaerica|type=transcript|length=1971bp
AAGTTATATGCATAAATGGGCATCCATTTTTTACAATTCTCATCATTTTT
GGTTTGAAAAACGACGAAATAAGAAACAATGGAAGGCTTGACTATCTTCG
CTTTGGTCCTTGCACTGACCACTACTACCTTGGCAAATCCAATGGGCTGG
GGTGACGAAATGGGCTGGGGTGATACAGTCTACAATGCGGCGCCCTGTTT
CATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCT
GGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCC
AAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTA
CGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAA
TGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGT
TTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTC
CTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCC
CCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTC
TACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGA
AATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCT
GTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAG
TCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTG
CCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAG
TCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGAC
GAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACC
CTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTA
AGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAAC
TGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATAC
AGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAG
ACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACA
CCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATC
TAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAA
ACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGAT
ACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGG
AGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGA
CACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCA
TCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCG
AAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAG
ATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGT
GGAGACGAAATGGAACCATCTAAGTCCTTGTCAGATACAGTCTACGATAT
GACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAAG
ATGAAAAATCAAACGATGAAGACACACCTGAAGCCATCTGAAGCCTTGTC
GTAGtgactatttgaaaaatttactttaaCTTTAACTTTATTGTAGTAAT
TTCAATTTCACTTAGATCATTTAATAGAAAAATTTGGAAGGGATTAAATG
AAAACTTCAATGTACGATTTTCTGACACCTCCCTGACCAtttgtgttttt
tataaaatagaatCCCACAAC Run BLAST on NCBI protein sequence of TCONS_00000467-protein >TCONS_00000467-protein ID=TCONS_00000467-protein|Name=TCONS_00000467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=570bp
MEGLTIFALVLALTTTTLANPMGWGDEMGWGDTVYNAAPCFIRNCPKGGD
EMEPSKSWSDTVYDMTPCFIRNCPKGGDEMEPSKSWSDTVYDMTPCFIRN
CPKGGDEMEPSKSWSDTVYDMTPCFIRNCPKGGDEMEPSKSWSDTVYDMT
PCFIRNCPKGGDEMEPSKSWSDTVYDMTPCFIRNCPKGGDEMEPSKSWSD
TVYDMTPCFIRNCPKGGDEMEPSKSWSDTVYDMTPCFIRNCPKGGDEMEP
SKSWSDTVYDMTPCFIRNCPKGGDEMEPSKSWSDTVYDMTPCFIRNCPKG
GDEMEPSKSWSDTVYDMTPCFIRNCPKGGDEMEPSKSWSDTVYDMTPCFI
RNCPKGGDEMEPSKSWSDTVYDMTPCFIRNCPKGGDEMEPSKSWSDTVYD
MTPCFIRNCPKGGDEMEPSKSWSDTVYDMTPCFIRNCPKGGDEMEPSKSW
SDTVYDMTPCFIRNCPKGGDEMEPSKSWSDTVYDMTPCFIRNCPKGGDEM
EPSKSWSDTVYDMTPCFIRNCPKGGDEMEPSKSLSDTVYDMTPCFIRNCP
KGGDEMEDEKSNDEDTPEAI Run BLAST on NCBI transcript from alignment at sc0000002:1141790..1144079+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000467 ID=TCONS_00000467|Name=TCONS_00000467|organism=Clytia hemisphaerica|type=transcript|length=2290bp|location=Sequence derived from alignment at sc0000002:1141790..1144079+ (Clytia hemisphaerica)
AAGTTATATGCATAAATGGGCATCCATTTTTTACAATTCTCATCATTTTT
GGTTTGAAAAACGACGAAATAAGGTAAGAGTCTTCTTTTGTAAATTCTCT
TTCAAAAGGAAGACTAGATGAATTGGGCAAAATTATGTATGGGAAATTTC
ATTGTCGGTTTCTGAGGCCCTGTTTTCTCTTGTCCGAAATAGATAGGTAG
CGTCCAGGTTCACTAGTCAATGGCCACCAGGCTAGGCAAAACAACgtttt
ctttgaaagaaaaaaacatcaaagtATTAGGTTTCTTTCTTGTTCGAAGA
TTCTTAGCCCGAAAATTCCCAGTTCAGGGCAACACATTTCACAGTCTCAC
TACTTTAAGATATTAATATTATATAGTCTTGTGATTTTTTAGAAACAATG
GAAGGCTTGACTATCTTCGCTTTGGTCCTTGCACTGACCACTACTACCTT
GGCAAATCCAATGGGCTGGGGTGACGAAATGGGCTGGGGTGATACAGTCT
ACAATGCGGCGCCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAA
ATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTG
TTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGT
CCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGC
CCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGT
CTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACG
AAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCC
TGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAA
GTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACT
GCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACA
GTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGA
CGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACAC
CCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCT
AAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAA
CTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATA
CAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGA
GACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGAC
ACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCAT
CTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGA
AACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGA
TACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTG
GAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATG
ACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACC
ATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCC
GAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCA
GATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGG
TGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATA
TGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAA
CCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCAT
CCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTTGT
CAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAA
GGTGGAGACGAAATGGAAGATGAAAAATCAAACGATGAAGACACACCTGA
AGCCATCTGAAGCCTTGTCGTAGtgactatttgaaaaatttactttaaCT
TTAACTTTATTGTAGTAATTTCAATTTCACTTAGATCATTTAATAGAAAA
ATTTGGAAGGGATTAAATGAAAACTTCAATGTACGATTTTCTGACACCTC
CCTGACCAtttgtgttttttataaaatagaatCCCACAAC Coding sequence (CDS) from alignment at sc0000002:1141790..1144079+ >TCONS_00000467 ID=TCONS_00000467|Name=TCONS_00000467|organism=Clytia hemisphaerica|type=CDS|length=1713bp|location=Sequence derived from alignment at sc0000002:1141790..1144079+ (Clytia hemisphaerica)
ATGGAAGGCTTGACTATCTTCGCTTTGGTCCTTGCACTGACCACTACTAC
CTTGGCAAATCCAATGGGCTGGGGTGACGAAATGGGCTGGGGTGATACAG
TCTACAATGCGGCGCCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGAC
GAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACC
CTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTA
AGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAAC
TGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATAC
AGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAG
ACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACA
CCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATC
TAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAA
ACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGAT
ACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGG
AGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGA
CACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCA
TCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCG
AAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAG
ATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGT
GGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGATAT
GACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAAC
CATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCATC
CGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTC
AGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAAAG
GTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACGAT
ATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGA
ACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTTCA
TCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCTGG
TCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCCAA
AGGTGGAGACGAAATGGAACCATCTAAGTCCTGGTCAGATACAGTCTACG
ATATGACACCCTGTTTCATCCGAAACTGCCCCAAAGGTGGAGACGAAATG
GAACCATCTAAGTCCTGGTCAGATACAGTCTACGATATGACACCCTGTTT
CATCCGAAACTGCCCCAAAGGTGGAGACGAAATGGAACCATCTAAGTCCT
TGTCAGATACAGTCTACGATATGACACCCTGTTTCATCCGAAACTGCCCC
AAAGGTGGAGACGAAATGGAAGATGAAAAATCAAACGATGAAGACACACC
TGAAGCCATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000467-exon-sc0000002-1491911889:1141790..1141862 | TCONS_00000467-exon-sc0000002-1491911889:1141790..1141862 | Clytia hemisphaerica | exon |
| TCONS_00000467-exon-sc0000002-1510915933:1141790..1141862 | TCONS_00000467-exon-sc0000002-1510915933:1141790..1141862 | Clytia hemisphaerica | exon |
| TCONS_00000467-exon-sc0000002-1575043694:1141790..1141862 | TCONS_00000467-exon-sc0000002-1575043694:1141790..1141862 | Clytia hemisphaerica | exon |
| TCONS_00000467-exon-sc0000002-1491911889:1142182..1144079 | TCONS_00000467-exon-sc0000002-1491911889:1142182..1144079 | Clytia hemisphaerica | exon |
| TCONS_00000467-exon-sc0000002-1510915933:1142182..1144079 | TCONS_00000467-exon-sc0000002-1510915933:1142182..1144079 | Clytia hemisphaerica | exon |
| TCONS_00000467-exon-sc0000002-1575043694:1142182..1144079 | TCONS_00000467-exon-sc0000002-1575043694:1142182..1144079 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1141790..1144079 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR022423 | Neurohypophysial_hormone_CS |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005185 | neurohypophyseal hormone activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0005185 |
neurohypophyseal hormone activity |
Blast
The following BLAST results are available for this feature:
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