TCONS_00000461 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000461
Unique NameTCONS_00000461
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000461 ID=TCONS_00000461|Name=TCONS_00000461|organism=Clytia hemisphaerica|type=transcript|length=1258bp
CTTTGTATCCACAATATTTATGGTGATTGTCTCTGCTTTTCGTCAAGGTA
AAGATAAATAAACATGGTGATTGCCAGTGACTTTGAAACCCGTTCATACA
AATCGTTAGCCTTCCGTTTCGGGCGCCAATTCTTATTCTTCGTTGTTTGC
CTATTGGGCGCCGCTGGTATCATATACGCCATCGAGAGAAatgcttttga
aaaatatgaaaacaatACAATAAATGATCACAACTTGGATGCGATCGAGA
CTGACCGAGCTCGTGAGACTGAACACTTCTTAAATACGACAGGTTTTCCA
GTCATCAAGGAATTTGTTGAGGAACATGGTATAGGCGCggagaaaatgaa
agaatttgttCAAGAGCTTCATAAGAGGATATACTACAAAGAAAACACAA
CCGTACCTAATCATTACTATTATGATAATTTGTATCGTCAAACAACTTAT
TTGGAATCTTACATCTTGGTATTATCAGTTCTGACAACAGTTGGTTGGGG
ACATGTTACACCGATAACAATTGGAGCAAAAGCTTTCGTAGCTTTAATCG
CTATCATTGGGATTCCTCTTTTCTTCATCATGATCGTGTCTGGATCACAA
ATTGTCATCCGGCTGGTCAAAGACGTGTTACGAAAATGTTGCCGCGGATA
TCGCGTTGATCTGATTTACAAACCTATCATATGCGCCATATTGTTAACTT
ACGTCATGCTTACGTCAGCAGCTATTGCTGCCATGGAAGGATTCGATTAT
CATGCTGCATTATGGTATTCTTTGATGTCATTGACAACCGTTGGTTTTGG
TGACGTCATCCAATATGGCCAACATATCGAAATCAAATATGGTAAAGAAG
CTAGGGATGCAGGGCTAGCTGTATTTTTATTGTGCTGGCTTGTGACAGGC
TTTATATTAATTGGAGCTCTGCTTTTAGGTGTCATTTATGATAATTGGGG
CGATAAGAAGACTGTTCAGTTTAATAATATTTATAAAGCCAATAATGACG
ATGAGCTCATTGAAAATATGGAGGAAGATTATTAACTTATACATGTAACT
TCTCTCAGTCTTTTCCAGTAAGAAAGAATATACAATAATGGTAAAATTAA
CAGAGTGGACTAAAAGTCTACAcggattttttcaaaagaacaattttata
tgaataaatcaacaaacaAATGGTTGTTTAAAAAGTTCTAATCTTTTCAT
CCATGTAATATAATCTACACGTACACCGACCGgtatatttcttttgttta
tccGAGGG
Run BLAST on NCBI

protein sequence of TCONS_00000461-protein

>TCONS_00000461-protein ID=TCONS_00000461-protein|Name=TCONS_00000461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MVIASDFETRSYKSLAFRFGRQFLFFVVCLLGAAGIIYAIERNAFEKYEN
NTINDHNLDAIETDRARETEHFLNTTGFPVIKEFVEEHGIGAEKMKEFVQ
ELHKRIYYKENTTVPNHYYYDNLYRQTTYLESYILVLSVLTTVGWGHVTP
ITIGAKAFVALIAIIGIPLFFIMIVSGSQIVIRLVKDVLRKCCRGYRVDL
IYKPIICAILLTYVMLTSAAIAAMEGFDYHAALWYSLMSLTTVGFGDVIQ
YGQHIEIKYGKEARDAGLAVFLLCWLVTGFILIGALLLGVIYDNWGDKKT
VQFNNIYKANNDDELIENMEEDY
Run BLAST on NCBI

transcript from alignment at sc0000002:1038413..1040037+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000461 ID=TCONS_00000461|Name=TCONS_00000461|organism=Clytia hemisphaerica|type=transcript|length=1625bp|location=Sequence derived from alignment at sc0000002:1038413..1040037+ (Clytia hemisphaerica)
CTTTGTATCCACAATATTTATGGTGATTGTCTCTGCTTTTCGTCAAGGTA
AAGATAAATAAACATGGTGATTGCCAGTGACTTTGAAACCCGTTCATACA
AATCGTTAGCCTTCCGTTTCGGGCGCCAATTCTTATTCTTCGTTGTTTGC
CTATTGGGCGCCGCTGGTATCATATACGCCATCGAGAGAAatgcttttga
aaaatatgaaaacaatACAATAAATGATCACAACTTGGATGCGATCGAGA
CTGACCGAGCTCGTGAGACTGAACACTTCTTAAATACGACAGGTTTTCCA
GTCATCAAGGAATTTGTTGAGGAACATGGTATAGGCGCggagaaaatgaa
agaatttgttCAAGAGCTTCATAAGAGGATATACTACAAAGAAAACACAA
CCGTACCTAATCATTACTATTATGATAATTTGTATCGTCAAACAACTTAT
TTGGAATCTTACATCTTGGTATTATCAGTTCTGACAACAGTTGGTAAgat
aatgttcttaattttggtCCTTCACACCAGGTGGcaccagtagcgtggtg
gcagggagGGCAActaaatggctgattttttttaTGGGCGCCGAAAGACA
AAGCGCCTCTGATTACAAATTTCGGCGCCCCTATGCACCTTAGAATTAgc
agttttcagccaaaaagagaaaaaaaaacaaaaaaattgactaagtGACT
TTAAGGTTGAGGTTGAAACTCTACTTGCCAAACTTGTTGGGAAATGTCTT
TTgcgttttttgttaaaaattaccTTACACGATTTTACTACTGTTATCCA
AGTAACTACTGTCGTCCAACGGTTGTTTCATCAAGAAATTATTGTATCAT
TTAAATTAAGGTTGGGGACATGTTACACCGATAACAATTGGAGCAAAAGC
TTTCGTAGCTTTAATCGCTATCATTGGGATTCCTCTTTTCTTCATCATGA
TCGTGTCTGGATCACAAATTGTCATCCGGCTGGTCAAAGACGTGTTACGA
AAATGTTGCCGCGGATATCGCGTTGATCTGATTTACAAACCTATCATATG
CGCCATATTGTTAACTTACGTCATGCTTACGTCAGCAGCTATTGCTGCCA
TGGAAGGATTCGATTATCATGCTGCATTATGGTATTCTTTGATGTCATTG
ACAACCGTTGGTTTTGGTGACGTCATCCAATATGGCCAACATATCGAAAT
CAAATATGGTAAAGAAGCTAGGGATGCAGGGCTAGCTGTATTTTTATTGT
GCTGGCTTGTGACAGGCTTTATATTAATTGGAGCTCTGCTTTTAGGTGTC
ATTTATGATAATTGGGGCGATAAGAAGACTGTTCAGTTTAATAATATTTA
TAAAGCCAATAATGACGATGAGCTCATTGAAAATATGGAGGAAGATTATT
AACTTATACATGTAACTTCTCTCAGTCTTTTCCAGTAAGAAAGAATATAC
AATAATGGTAAAATTAACAGAGTGGACTAAAAGTCTACAcggattttttc
aaaagaacaattttatatgaataaatcaacaaacaAATGGTTGTTTAAAA
AGTTCTAATCTTTTCATCCATGTAATATAATCTACACGTACACCGACCGg
tatatttcttttgtttatccGAGGG

Coding sequence (CDS) from alignment at sc0000002:1038413..1040037+

>TCONS_00000461 ID=TCONS_00000461|Name=TCONS_00000461|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at sc0000002:1038413..1040037+ (Clytia hemisphaerica)
ATGGTGATTGCCAGTGACTTTGAAACCCGTTCATACAAATCGTTAGCCTT
CCGTTTCGGGCGCCAATTCTTATTCTTCGTTGTTTGCCTATTGGGCGCCG
CTGGTATCATATACGCCATCGAGAGAAatgcttttgaaaaatatgaaaac
aatACAATAAATGATCACAACTTGGATGCGATCGAGACTGACCGAGCTCG
TGAGACTGAACACTTCTTAAATACGACAGGTTTTCCAGTCATCAAGGAAT
TTGTTGAGGAACATGGTATAGGCGCggagaaaatgaaagaatttgttCAA
GAGCTTCATAAGAGGATATACTACAAAGAAAACACAACCGTACCTAATCA
TTACTATTATGATAATTTGTATCGTCAAACAACTTATTTGGAATCTTACA
TCTTGGTATTATCAGTTCTGACAACAGTTGGTTGGGGACATGTTACACCG
ATAACAATTGGAGCAAAAGCTTTCGTAGCTTTAATCGCTATCATTGGGAT
TCCTCTTTTCTTCATCATGATCGTGTCTGGATCACAAATTGTCATCCGGC
TGGTCAAAGACGTGTTACGAAAATGTTGCCGCGGATATCGCGTTGATCTG
ATTTACAAACCTATCATATGCGCCATATTGTTAACTTACGTCATGCTTAC
GTCAGCAGCTATTGCTGCCATGGAAGGATTCGATTATCATGCTGCATTAT
GGTATTCTTTGATGTCATTGACAACCGTTGGTTTTGGTGACGTCATCCAA
TATGGCCAACATATCGAAATCAAATATGGTAAAGAAGCTAGGGATGCAGG
GCTAGCTGTATTTTTATTGTGCTGGCTTGTGACAGGCTTTATATTAATTG
GAGCTCTGCTTTTAGGTGTCATTTATGATAATTGGGGCGATAAGAAGACT
GTTCAGTTTAATAATATTTATAAAGCCAATAATGACGATGAGCTCATTGA
AAATATGGAGGAAGATTATTAAATGGTGATTGCCAGTGACTTTGAAACCC
GTTCATACAAATCGTTAGCCTTCCGTTTCGGGCGCCAATTCTTATTCTTC
GTTGTTTGCCTATTGGGCGCCGCTGGTATCATATACGCCATCGAGAGAAa
tgcttttgaaaaatatgaaaacaatACAATAAATGATCACAACTTGGATG
CGATCGAGACTGACCGAGCTCGTGAGACTGAACACTTCTTAAATACGACA
GGTTTTCCAGTCATCAAGGAATTTGTTGAGGAACATGGTATAGGCGCgga
gaaaatgaaagaatttgttCAAGAGCTTCATAAGAGGATATACTACAAAG
AAAACACAACCGTACCTAATCATTACTATTATGATAATTTGTATCGTCAA
ACAACTTATTTGGAATCTTACATCTTGGTATTATCAGTTCTGACAACAGT
TGGTTGGGGACATGTTACACCGATAACAATTGGAGCAAAAGCTTTCGTAG
CTTTAATCGCTATCATTGGGATTCCTCTTTTCTTCATCATGATCGTGTCT
GGATCACAAATTGTCATCCGGCTGGTCAAAGACGTGTTACGAAAATGTTG
CCGCGGATATCGCGTTGATCTGATTTACAAACCTATCATATGCGCCATAT
TGTTAACTTACGTCATGCTTACGTCAGCAGCTATTGCTGCCATGGAAGGA
TTCGATTATCATGCTGCATTATGGTATTCTTTGATGTCATTGACAACCGT
TGGTTTTGGTGACGTCATCCAATATGGCCAACATATCGAAATCAAATATG
GTAAAGAAGCTAGGGATGCAGGGCTAGCTGTATTTTTATTGTGCTGGCTT
GTGACAGGCTTTATATTAATTGGAGCTCTGCTTTTAGGTGTCATTTATGA
TAATTGGGGCGATAAGAAGACTGTTCAGTTTAATAATATTTATAAAGCCA
ATAATGACGATGAGCTCATTGAAAATATGGAGGAAGATTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000290XLOC_000290Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000461-proteinTCONS_00000461-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000461-exon-sc0000002-1491911889:1038413..1038905TCONS_00000461-exon-sc0000002-1491911889:1038413..1038905Clytia hemisphaericaexon
TCONS_00000461-exon-sc0000002-1510915933:1038413..1038905TCONS_00000461-exon-sc0000002-1510915933:1038413..1038905Clytia hemisphaericaexon
TCONS_00000461-exon-sc0000002-1575043694:1038413..1038905TCONS_00000461-exon-sc0000002-1575043694:1038413..1038905Clytia hemisphaericaexon
TCONS_00000461-exon-sc0000002-1491911889:1039273..1040037TCONS_00000461-exon-sc0000002-1491911889:1039273..1040037Clytia hemisphaericaexon
TCONS_00000461-exon-sc0000002-1510915933:1039273..1040037TCONS_00000461-exon-sc0000002-1510915933:1039273..1040037Clytia hemisphaericaexon
TCONS_00000461-exon-sc0000002-1575043694:1039273..1040037TCONS_00000461-exon-sc0000002-1575043694:1039273..1040037Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1038413..1040037 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.96159	1.81392	1.03392	0.524497	2.69092	2.81118	4.21772	5.16979	4.38899	2.78884	2.12441	1.80194	17.8819	13.852	4.41702	5.72938	5.53479	5.95923	24.8788	32.0532	9.61369	9.52199	10.3149	12.3039	5.66461	7.25922	0.741995	0.593908	3.41597	2.98314
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0032802pore_dom_K_chnl
IPR013099K_chnl_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005267potassium channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0071805potassium ion transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071805 potassium ion transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005267 potassium channel activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top