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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000459 ID=TCONS_00000459|Name=TCONS_00000459|organism=Clytia hemisphaerica|type=transcript|length=1651bp
AACGATTTGTCATTAATTGAAGTTAACTACTCGAATTGATAAGAGGTCTT
CCATtctgcagattttttttctaaaaattgTGCTATCACAGCAAGTTCCG
AACATGAGTTCATTTTTACCGCCCAGTAAAGCACCGGAGGCGTACCGCCC
TTTAAACTACACGCCAACGTCATTCGTAACCAACTTCAAAGAAATGTCAC
AACAAATCGActctaacaacaacaacaacaacaacaataaccCTCATGAA
AGCGAAGGAAAATTCTCACCTCGACCAGCGACGCAATTTTCACCAATGGG
CGATTTACGATCACACCCTTCGACGCAAGATACACATCCATTCAAAACCT
TCGACGACTCGAAATCCTTTTTGAATAATAATACGCCAAATGGTTCAATG
CCCGAACAAGATTCAATTTCATCGTCACTACAGTCTTTCCACTCTAGTGG
ACTTCCAACATCATATACTTCGTCTTACAATAACAACTCTATGCAAACGA
CCCTCTCTTCGCCGTCAAGTATCACGTCAAATATGTCGAGAAGCTTTTCA
TCCTCATCTTACGTTAAGCAGGAATCagatgaagaagatgaaggAGATCT
TACGCAATCGAAGAACGGTAAAGGTGGAAAATTACCTCGAAAACCACGAA
CAATCTTCACTAGTCAACAGTTACGCGAACTCAACCGTGCTTTCGAACGC
ACGCATTACCTCTCGTTACCTGAACGCGCAGAATTAGCACACGCACTCGG
TTTAACTCAAACCCAAATCAAAATCTGGTTCCAAAACAAGAGATCTAAAT
TCAAGAAAATCATCAAAGCTAATGGAGGACAAATGCCACCGCCATCAAGC
CTCGTTTCTGGTGGCAATCCTGGTTTATGGCCGTCTGGTTATGGTGAGAA
AAGCTTTGGCGGACCACCAATGCCACACTTGAGTCCATTCTCACCACCAC
CATCATCGCATAGTTCGGTACCCGGTGATTCTTGGTACTACCGGATGCAA
TCGGCCGGTGGATACGGAAGTCACGAAACCATGTTTCCATACGGTGGCAC
AAGCGGAACTGATGTTCGAACAACTCGGCCTAATTTCTCTTATCATATGT
AGTGTTTAAACTAATCACCTTTCTTAACCCTTAGTAACTGTCTGTTTCTG
TCCtgagtatatatttttttcactaaaaattcacaaattttagttttatc
tttttttttaacttgtgTTCtacgaaaattgtaaaaaaaaaagtaacTTC
AATATTATATTTTGGAAACACTTTTAATCATTGTATAGATGGACAAGTGA
AAATATCGAATAGTTTATTTTGTTCgctattttaagttttttttgaagag
caaatatttttTAGCCATGGAAATAGTTTAAAAATGGTATCGAATTAGTT
TTTTTGTATATATGTACATAAATTATCTTACTACAACACACAGTATCAAT
ATTttacaatgaaataaaaatccGAAAGAACGAAATAGCTAAACCTCTCA
TACAACTATGTTCCAGCTTCTAGTGTTTCGATCGAATTTTTCCCCTCGTT
AACTctattcaaactaggcttttaggaGTGGTTCCTGTAACAACCCTTAA
CTTTATCTATTGGGTCTTTTTGGACGAAATTTGGTACATAAGATCTTTGT
C Run BLAST on NCBI transcript from alignment at sc0000002:1021887..1025647+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000459 ID=TCONS_00000459|Name=TCONS_00000459|organism=Clytia hemisphaerica|type=transcript|length=3761bp|location=Sequence derived from alignment at sc0000002:1021887..1025647+ (Clytia hemisphaerica)
AACGATTTGTCATTAATTGAAGTTAACTACTCGAATTGATAAGAGGTCTT
CCATtctgcagattttttttctaaaaattggtatgaaattttcataaatt
tgtttataattattttgttAAACGGTACTATATATCACAGGTAGATCATT
AGTAATTGATTATTTTCATACTTAAGAATTACTTCGGTAATTATATATGA
GGAGGGGCAGCATAATGCTCTNGTTAACGGTAATTACAGGTGAATTCAAA
TCTGAAGAATttgtgaaaataatttttggattGTTCATTCTTACAGTTTT
AAGCTGATTTTTACTATTTTCGGCGCTCTTTTCTGTCTATTCGTGATTAT
TATGAGTGactaaattgaaaaatgtcaaaaataaagcaattattttttta
attgcttTGCGCGAAAGTTGCGCACTTTTCGAAACAGGACAATTTAGATA
AATCGCTTGAGACTTCTGATTTATGAAAGGTTGTTTGCAACAAatattaa
tttattttcagATTAATTACgcgaaataattattttttcaataaaaaaat
tgaaatactcgATGAAGTTTTGCGGatgaaaagttaactttttatAGCAA
ATATAATATTCAGCGTTGAGAATTGTTGTGATGAAAACACAAACTGCGTA
AGGAAAATCCCTCCAGTTTTTGTCTCAATCGAAAAGAAAAGAACTCTGAA
TCAGAtacagttaaaaaaaaactaaaacagtAAAACGAAATATAAAATGG
GCGAAAAATATACCAATGCCGTCTGTCATTTTCTCATGGTTATctcagaa
aaaatatttgaagaaataCGCATAATACTCACTTTCCCCGATATTTTTAT
TCTAATATTTTCCCATCTTCGCacttcaaaataataataatcacacaatg
ataatttttcaaacaaaaggtcaaaaagaacgtgttgaaaaaaaacataa
tggcCTTCTATTGTTCGTATTATTCTATATTtattaataattaaaattaA
CGATAGTATAATTGTGTATAACTGGGCTTAAGGTTTTAAAACGATTTGTC
ATTAATTGAAGTTAACTACTCGAATTGATAAGAGGTCTTCCATtctgcag
attttttttctaaaaattggtatgaaattttcataaatttgtttataatt
attttgttAAACGGTACTATATATCACAGGTAGATCATTAGTAATTGATT
ATTTTCATTCTTAAGAATTACTTCGGTAATTATATATGAGGAGGGGCAGC
ATAATGCTCCGTCAACCATCCAAAAATGAGAAATCTCTTAGTCCAActaa
taaacaaaaattaatgtttaatTAATATTCTTTCTTCTATTTCACAGTGC
TATCACAGCAAGTTCCGAACATGAGTTCATTTTTACCGCCCAGTAAAGCA
CCGGAGGCGTACCGCCCTTTAAACTACACGCCAACGTCATTCGTAACCAA
CTTCAAAGAAATGTCACAACAAATCGActctaacaacaacaacaacaaca
acaataaccCTCATGAAAGCGAAGGAAAATTCTCACCTCGACCAGCGACG
CAATTTTCACCAATGGGCGATTTACGATCACACCCTTCGACGCAAGATAC
ACATCCATTCAAAACCTTCGACGACTCGAAATCCTTTTTGAATAATAATA
CGCCAAATGGTTCAATGCCCGAACAAGATTCAATTTCATCGTCACTACAG
TCTTTCCACTCTAGTGGACTTCCAACATCATATACTTCGTCTTACAATAA
CAACTCTATGCAAACGACCCTCTCTTCGCCGTCAAGTATCACGTCAAATA
TGTCGAGAAGCTTTTCATCCTCATCTTACGTTAAGCAGGAATCagatgaa
gaagatgaaggAGGTAAAATGTTTATTTATATTAAGGAGATAATATTGAC
TTGTTGGAACTAAAATTATCTTCTTTGAATTTTAATTGACACTGATATCT
TTCATAACGATAATTTTTAGCAGGTTTTTAGCAGAGAAAAACGTCTTAGC
TACATTGAACATTTTGCAGCAAAAATGTAGGAGGTTTTCCTTTAATTTTC
AATGAATGTCATTAACATGATTAGGAATAATTAGATGGGTTGGTAGCTCC
TAATTTAATTGCATTTAACATTTGACGTTGGTCATGTTTTTTTCCCAAAG
CTTAAAAATTGTGATAAGTCAAAATGATGCATTCAAACAATTCGCGATAA
AGATCACCATTAAAGTTTTTAATCACCTCCTTGCCATAAATTATCACAAA
GATAATCAAAACATAAGAATTTCGTAAACAATCAACCATTTCTATTTCCA
GCGTTAATATCAGATAATTTCAATGATAAAATTATGAAACCTTGCATGTg
aaaaaaacacgaaaacaTGTCCTAACTTTTTCCTTAATGTTGTATTTGTG
GTAGAATGGGCGCCTTAATAAAACAGTTAATTGTCGACTTTGCATTTGAG
TAATGTTTTTCCGTTTTACGAAGAGAAAAAGTCTTAACGACCTGTGACCA
ATTTAAGACTTTTGAATAGCTATTAAAAAATACAGGACGTTAAAATTAAT
GACCTCTTTTCATTACCTATTTgaaattgattatttttattgaaactttc
ctaatttggaAAAAAGACTTTCTCAAGTGGGTATATTGTTTTTAATATCC
GATAATTGTTGGAAAAATTAATgagtaattcttttcaattttttcatatc
TTATAGATCTTACGCAATCGAAGAACGGTAAAGGTGGAAAATTACCTCGA
AAACCACGAACAATCTTCACTAGTCAACAGTTACGCGAACTCAACCGTGC
TTTCGAACGCACGCATTACCTCTCGTTACCTGAACGCGCAGAATTAGCAC
ACGCACTCGGTTTAACTCAAACCCAAATCAAAATCTGGTTCCAAAACAAG
AGATCTAAATTCAAGAAAATCATCAAAGCTAATGGAGGACAAATGCCACC
GCCATCAAGCCTCGTTTCTGGTGGCAATCCTGGTTTATGGCCGTCTGGTT
ATGGTGAGAAAAGCTTTGGCGGACCACCAATGCCACACTTGAGTCCATTC
TCACCACCACCATCATCGCATAGTTCGGTACCCGGTGATTCTTGGTACTA
CCGGATGCAATCGGCCGGTGGATACGGAAGTCACGAAACCATGTTTCCAT
ACGGTGGCACAAGCGGAACTGATGTTCGAACAACTCGGCCTAATTTCTCT
TATCATATGTAGTGTTTAAACTAATCACCTTTCTTAACCCTTAGTAACTG
TCTGTTTCTGTCCtgagtatatatttttttcactaaaaattcacaaattt
tagttttatctttttttttaacttgtgTTCtacgaaaattgtaaaaaaaa
aagtaacTTCAATATTATATTTTGGAAACACTTTTAATCATTGTATAGAT
GGACAAGTGAAAATATCGAATAGTTTATTTTGTTCgctattttaagtttt
ttttgaagagcaaatatttttTAGCCATGGAAATAGTTTAAAAATGGTAT
CGAATTAGTTTTTTTGTATATATGTACATAAATTATCTTACTACAACACA
CAGTATCAATATTttacaatgaaataaaaatccGAAAGAACGAAATAGCT
AAACCTCTCATACAACTATGTTCCAGCTTCTAGTGTTTCGATCGAATTTT
TCCCCTCGTTAACTctattcaaactaggcttttaggaGTGGTTCCTGTAA
CAACCCTTAACTTTATCTATTGGGTCTTTTTGGACGAAATTTGGTACATA
AGATCTTTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000459-exon-sc0000002-1491911889:1021887..1021966 | TCONS_00000459-exon-sc0000002-1491911889:1021887..1021966 | Clytia hemisphaerica | exon |
| TCONS_00000459-exon-sc0000002-1510915933:1021887..1021966 | TCONS_00000459-exon-sc0000002-1510915933:1021887..1021966 | Clytia hemisphaerica | exon |
| TCONS_00000459-exon-sc0000002-1575043694:1021887..1021966 | TCONS_00000459-exon-sc0000002-1575043694:1021887..1021966 | Clytia hemisphaerica | exon |
| TCONS_00000459-exon-sc0000002-1491911889:1023234..1023749 | TCONS_00000459-exon-sc0000002-1491911889:1023234..1023749 | Clytia hemisphaerica | exon |
| TCONS_00000459-exon-sc0000002-1510915933:1023234..1023749 | TCONS_00000459-exon-sc0000002-1510915933:1023234..1023749 | Clytia hemisphaerica | exon |
| TCONS_00000459-exon-sc0000002-1575043694:1023234..1023749 | TCONS_00000459-exon-sc0000002-1575043694:1023234..1023749 | Clytia hemisphaerica | exon |
| TCONS_00000459-exon-sc0000002-1491911889:1024593..1025647 | TCONS_00000459-exon-sc0000002-1491911889:1024593..1025647 | Clytia hemisphaerica | exon |
| TCONS_00000459-exon-sc0000002-1510915933:1024593..1025647 | TCONS_00000459-exon-sc0000002-1510915933:1024593..1025647 | Clytia hemisphaerica | exon |
| TCONS_00000459-exon-sc0000002-1575043694:1024593..1025647 | TCONS_00000459-exon-sc0000002-1575043694:1024593..1025647 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:1021887..1025647 + |
Blast
BLAST of TCONS_00000459 vs. Swiss-Prot (Human)
Match: DLX1 (Homeobox protein DLX-1 OS=Homo sapiens GN=DLX1 PE=1 SV=3) HSP 1 Score: 109.768 bits (273), Expect = 1.058e-26 Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 2
Query: 614 NGKGGKLPRKPRTIFTSQQLRELNRAFERTHYLSLPERAELAHALGLTQTQIKIWFQNKRSKFKKIIKANGGQM 835
NGKG K+ RKPRTI++S QL+ LNR F++T YL+LPERAELA +LGLTQTQ+KIWFQNKRSKFKK++K G +
Sbjct: 122 NGKGKKI-RKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLMKQGGAAL 194
The following BLAST results are available for this feature:
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