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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000443 ID=TCONS_00000443|Name=TCONS_00000443|organism=Clytia hemisphaerica|type=transcript|length=1357bpRun BLAST on NCBI protein sequence of TCONS_00000443-protein >TCONS_00000443-protein ID=TCONS_00000443-protein|Name=TCONS_00000443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp MSNNDKNHTTNPHDIVISKNNEGGLESPSDKHARIYSSDHLNEVVPHQTDRun BLAST on NCBI transcript from alignment at sc0000002:757087..780347+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000443 ID=TCONS_00000443|Name=TCONS_00000443|organism=Clytia hemisphaerica|type=transcript|length=23261bp|location=Sequence derived from alignment at sc0000002:757087..780347+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:757087..780347+ >TCONS_00000443 ID=TCONS_00000443|Name=TCONS_00000443|organism=Clytia hemisphaerica|type=CDS|length=13464bp|location=Sequence derived from alignment at sc0000002:757087..780347+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00000443 vs. Swiss-Prot (Human)
Match: S352B (Solute carrier family 35 member E2B OS=Homo sapiens GN=SLC35E2B PE=2 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 7.375e-88 Identity = 158/355 (44.51%), Postives = 227/355 (63.94%), Query Frame = 3
Query: 270 HQTDEIILEREKSNTRRHVHRAQSFDKENAQKALFTPVFMKQCIV-MSLWFFTSFASIVLNKYLLSTLDVDASLLGACQIVMTTFFGSIVMYVPYICNLTSRKRHKKMENFNRFQFYKTMSILGWLRCGAVICSVIGLKYVAVSFSETIKSSAPLFTALFAYFLLKEYSGIYVNLSLMPIMFGLAISTYTELSFNMTGFLAACTNNILDCIQNVFSKKLLCGDDMKFSPLELQFYTSVAATVVQVPLWFFFIDLTTKWETTDSY-----VASMLLFNGVVFYLQSLFAYSLMSLISPVTFSVSNTVKRAGLIWFSILVFGNKVTLLNLFGTVLVVAGVFLYQRARMMEQHKRDQM 1316
H++++I+ + T +V + + L V+ + ++ ++LWFF SF ++ LNKY+LS L + S+LGA Q++ TT G + VP C L +HK ++ F TM +G +R V+ ++ LK VAVSF+ET+KSSAP+FT + + +L EY+G+ VNLSL+P+M GLA+ T TE+SFN+ GF AA + NI+DC+QNVFSKKLL GD +FS ELQFYTS AA + VP FF D+ + S+ V +LL +GV+F+LQS+ AY+LM ISPVTFSV++TVK A IW S++VFGNK+T L+ GT LV GV LY +AR QH+++ +
Sbjct: 35 HRSEKIVFAKSDGGTDENVLTVTITETTVIESDLG--VWSSRALLYLTLWFFFSFCTLFLNKYILSLLGGEPSMLGAVQMLSTTVIGCVKTLVP--CCL---YQHKARLSYPP-NFLMTMLFVGLMRFATVVLGLVSLKNVAVSFAETVKSSAPIFTVIMSRMILGEYTGLLVNLSLIPVMGGLALCTATEISFNVLGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAPELQFYTSAAAVAMLVPARVFFTDVPVIGRSGKSFSYNQDVVLLLLTDGVLFHLQSVTAYALMGKISPVTFSVASTVKHALSIWLSVIVFGNKITSLSAVGTALVTVGVLLYNKAR---QHQQEAL 378 The following BLAST results are available for this feature:
BLAST of TCONS_00000443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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