TCONS_00000440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000440
Unique NameTCONS_00000440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000440 ID=TCONS_00000440|Name=TCONS_00000440|organism=Clytia hemisphaerica|type=transcript|length=441bp
acagcGTGGTACACCTTTCAAAGCTAGTTTCCAAGGCCCAGTACCTTTAC
CAGAGTATTTCGAGCTGATCGATAATCATTTCAACATTCGATTATCGTTG
GAAAGTTACAAAAACCTTCTCCAACAACGAGCTCACCAATTTCGAGTGAT
ACAGAAACGCCTTCTGACGAGGTTCAAGGATAAGACACCGTCGCCTTTGC
AGCATCTGGATACGATACTGGAAGGCACTTATAAACAGGTAACGATGTTC
AATCTCAggcttttccaggaagaaaTAAGTAGGAGAGCGACGAATCACTC
ACGTAACAAAGACAACGCGTGCGAAGCACGTGAACCAATTTTAGCGTGCG
CGATTTCGTACAAAACGCCCTTagatatttttctataaaatcataGTATA
ATTGACGCGCGCAATTTTTCGCTCACCATACGAGATTGACG
Run BLAST on NCBI

transcript from alignment at sc0000002:685788..686228+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000440 ID=TCONS_00000440|Name=TCONS_00000440|organism=Clytia hemisphaerica|type=transcript|length=441bp|location=Sequence derived from alignment at sc0000002:685788..686228+ (Clytia hemisphaerica)
acagcGTGGTACACCTTTCAAAGCTAGTTTCCAAGGCCCAGTACCTTTAC
CAGAGTATTTCGAGCTGATCGATAATCATTTCAACATTCGATTATCGTTG
GAAAGTTACAAAAACCTTCTCCAACAACGAGCTCACCAATTTCGAGTGAT
ACAGAAACGCCTTCTGACGAGGTTCAAGGATAAGACACCGTCGCCTTTGC
AGCATCTGGATACGATACTGGAAGGCACTTATAAACAGGTAACGATGTTC
AATCTCAggcttttccaggaagaaaTAAGTAGGAGAGCGACGAATCACTC
ACGTAACAAAGACAACGCGTGCGAAGCACGTGAACCAATTTTAGCGTGCG
CGATTTCGTACAAAACGCCCTTagatatttttctataaaatcataGTATA
ATTGACGCGCGCAATTTTTCGCTCACCATACGAGATTGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000281XLOC_000281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000440-exon-sc0000002-1491911889:685788..686228TCONS_00000440-exon-sc0000002-1491911889:685788..686228Clytia hemisphaericaexon
TCONS_00000440-exon-sc0000002-1510915933:685788..686228TCONS_00000440-exon-sc0000002-1510915933:685788..686228Clytia hemisphaericaexon
TCONS_00000440-exon-sc0000002-1575043694:685788..686228TCONS_00000440-exon-sc0000002-1575043694:685788..686228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:685788..686228 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.44261	1.20843	1.4247	2.64434	0.663701	0.358678	1.04981	0.195432	0.382211	1.17944	0	0.907919	0.667572	1.66123	1.3495	1.71507	0	0	0	0	0.78796	1.02537	1.50908	0	1.28752	0.802425	0	2.04748	0	0
Blast
[Close]
BLAST of TCONS_00000440 vs. Swiss-Prot (Human)
Match: PTHB1 (Protein PTHB1 OS=Homo sapiens GN=BBS9 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.376e-28
Identity = 50/75 (66.67%), Postives = 61/75 (81.33%), Query Frame = 2 
Query:   17 FKASFQGPVPLPEYFELIDNHFNIRLSLESYKNLLQQRAHQFRVIQKRLLTRFKDKTPSPLQHLDTILEGTYKQV 241
            F  SF G +PL EYFELID+HF +R++ E  + LL +RA QFR IQ+RLL RFKDKTP+PLQHLDT+L+GTYKQV
Sbjct:  632 FACSFSGSIPLQEYFELIDHHFELRINGEKLEELLSERAVQFRAIQRRLLARFKDKTPAPLQHLDTLLDGTYKQV 706
The following BLAST results are available for this feature:
BLAST of TCONS_00000440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTHB12.376e-2866.67Protein PTHB1 OS=Homo sapiens GN=BBS9 PE=1 SV=1[more]
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