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TCONS_00000439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000439
Unique NameTCONS_00000439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000439 ID=TCONS_00000439|Name=TCONS_00000439|organism=Clytia hemisphaerica|type=transcript|length=517bp
TTTCGACTGGTTCATTAAAAAGAAACCGTAGACAATGTATTATGTTTTGG
ACAAACACATGATTGAGCTTTGTGTTTATCAAAGAAGTTTGTCCTTTATG
GTCTTGCCCCCTATCCCTAAGATCTATGCTATTCCCCTGGCTCCAAAAAG
TCTGTCCCcactcaagaaaaaaaattgacaaatttcgAGGAGCTTACTGT
TTTTTCCAAGGGTAGTTTTGAAATTAACAGGATAATGGAAAGGGTTTTGA
TCTTCTTGATGAATTCTCCTACAGATTTCAGCAAATCAGCTTTTTCGAAT
TTTAAATTGACATTCAATTGTTGTCCCCCGTTCCCAGACTGAAAATTTTC
CATGCCCTCTCCtctggcttcaaaaaatttctttcctccCTTTAGCCTAG
AAACCTATTCCCCCTGAATCTAGGGGAGAcacaatgattattagcttctT
TTTACCTTCCAGCCTGAATGGACTAAATCAATTGGTGATCATGCTATTTC
TCTATCAAGTGTCTATG
Run BLAST on NCBI

transcript from alignment at sc0000002:675788..676304+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000439 ID=TCONS_00000439|Name=TCONS_00000439|organism=Clytia hemisphaerica|type=transcript|length=517bp|location=Sequence derived from alignment at sc0000002:675788..676304+ (Clytia hemisphaerica)
TTTCGACTGGTTCATTAAAAAGAAACCGTAGACAATGTATTATGTTTTGG ACAAACACATGATTGAGCTTTGTGTTTATCAAAGAAGTTTGTCCTTTATG GTCTTGCCCCCTATCCCTAAGATCTATGCTATTCCCCTGGCTCCAAAAAG TCTGTCCCcactcaagaaaaaaaattgacaaatttcgAGGAGCTTACTGT TTTTTCCAAGGGTAGTTTTGAAATTAACAGGATAATGGAAAGGGTTTTGA TCTTCTTGATGAATTCTCCTACAGATTTCAGCAAATCAGCTTTTTCGAAT TTTAAATTGACATTCAATTGTTGTCCCCCGTTCCCAGACTGAAAATTTTC CATGCCCTCTCCtctggcttcaaaaaatttctttcctccCTTTAGCCTAG AAACCTATTCCCCCTGAATCTAGGGGAGAcacaatgattattagcttctT TTTACCTTCCAGCCTGAATGGACTAAATCAATTGGTGATCATGCTATTTC TCTATCAAGTGTCTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000281XLOC_000281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000439-exon-sc0000002-1491911889:675788..676304TCONS_00000439-exon-sc0000002-1491911889:675788..676304Clytia hemisphaericaexon
TCONS_00000439-exon-sc0000002-1510915933:675788..676304TCONS_00000439-exon-sc0000002-1510915933:675788..676304Clytia hemisphaericaexon
TCONS_00000439-exon-sc0000002-1575043694:675788..676304TCONS_00000439-exon-sc0000002-1575043694:675788..676304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:675788..676304 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.232557 1.39384 1.71863 0 0.245498 0 0.138642 0.0970663 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.135711
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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