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TCONS_00000429 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000429
Unique NameTCONS_00000429
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length746

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000429 ID=TCONS_00000429|Name=TCONS_00000429|organism=Clytia hemisphaerica|type=transcript|length=746bp
aaaaataataaattgcTTATGATCAGTTATGATAGTCAATACTTCTAATG
AAATCTTTAGCTAGAACTAACAATACTTAAGCACCAATAACAATATACAC
CTTAGAGCAGAGGAGTTGTTAATATTCatacaaaaatgacaaattacTTA
TAATTGTACAGTCAATAAATGCGAATAAATATCTTTAGCACATGAGTTGG
TAATATTGATACAAAAAATGTTGAGTTGCTTATAATAGTCAATATTGTTA
AATGAGGTATTTGGCTCCAAAGGCAAATCAGCCACTGAGAGGCTCTACCT
TACAACATTTAAGTTTATAACGAATATGGGTATGATCGGCCCTCATCAAA
TGGAAAGATGAAATCACATGATTATTTGGACATTTGTTGTGAGATTGTCG
ATCCAGGTAGATGACATGACCAGGGCCGTTATGCGGACTTTTCGGTGTAT
AATGGTAATGACATCTCTGTTGATGAGTGTATTGTATTCTACAACATCCA
TAATGATACCAACTTTCTCGTCCTGCTCGTAGATATCGTTGACTTGTCAT
CAAATCATTGCCGTTACATTTGACATCTAAACGGTCCAGGTAAACTAAGT
TGCCGTGTCCGTTGTCTTTCTTGAGAGTGTTCTTGTAGTAATTGGCTGCA
CAAGGATATTGTATTGTACTGCAGTAATATTCATATCTAGAGAAGATGTt
aaatttgaaagatatttattGGGTAGTTTCTCCGGTTAGACCAAAG
Run BLAST on NCBI

transcript from alignment at sc0000002:391902..392797+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000429 ID=TCONS_00000429|Name=TCONS_00000429|organism=Clytia hemisphaerica|type=transcript|length=896bp|location=Sequence derived from alignment at sc0000002:391902..392797+ (Clytia hemisphaerica)
aaaaataataaattgcTTATGATCAGTTATGATAGTCAATACTTCTAATG AAATCTTTAGCTAGAACTAACAATACTTAAGCACCAATAACAATATACAC CTTAGAGCAGAGGAGTTGTTAATATTCatacaaaaatgacaaattacTTA TAATTGTACAGTCAATAAATGCGAATAAATATCTTTAGCACATGAGTTGG TAATATTGATACAAAAAATGTTGAGTTGCTTATAATAGTCAATATTGTTA AATGAGGTATTTGGCTCCAAAGGCAAATCAGCCACTGAGAGGCTCTACCT TACAACATTTAAGTTTATAACGAATATGGGTATGATCGGCCCTCATCAAA TGGAAAGATGAAATCACATGATTATTTGGACATTTGTTGTGAGATTGTCG ATCCAGGTAGATGACATGGCCAGGACCGTTATGCCAAGNAGGCTCTACCT TACAACATTTAAGTTTATAACGAATATGGGTATGATCGGCCCTTATCAAA TGGAAAGATGAAATCACATGATTATTTGGACATCTGTTGAAATATTGTCG ATCCAGGTAGATAACATGACCAGGGCCGTTATGCGGACTTTTCGGTGTAT AATGGTAATGACATCTCTGTTGATGAGTGTATTGTATTCTACAACATCCA TAATGATACCAACTTTCTCGTCCTGCTCGTAGATATCGTTGACTTGTCAT CAAATCATTGCCGTTACATTTGACATCTAAACGGTCCAGGTAAACTAAGT TGCCGTGTCCGTTGTCTTTCTTGAGAGTGTTCTTGTAGTAATTGGCTGCA CAAGGATATTGTATTGTACTGCAGTAATATTCATATCTAGAGAAGATGTt aaatttgaaagatatttattGGGTAGTTTCTCCGGTTAGACCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000278XLOC_000278Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000429-exon-sc0000002-1491911889:391902..392316TCONS_00000429-exon-sc0000002-1491911889:391902..392316Clytia hemisphaericaexon
TCONS_00000429-exon-sc0000002-1510915933:391902..392316TCONS_00000429-exon-sc0000002-1510915933:391902..392316Clytia hemisphaericaexon
TCONS_00000429-exon-sc0000002-1575043694:391902..392316TCONS_00000429-exon-sc0000002-1575043694:391902..392316Clytia hemisphaericaexon
TCONS_00000429-exon-sc0000002-1491911889:392467..392797TCONS_00000429-exon-sc0000002-1491911889:392467..392797Clytia hemisphaericaexon
TCONS_00000429-exon-sc0000002-1510915933:392467..392797TCONS_00000429-exon-sc0000002-1510915933:392467..392797Clytia hemisphaericaexon
TCONS_00000429-exon-sc0000002-1575043694:392467..392797TCONS_00000429-exon-sc0000002-1575043694:392467..392797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:391902..392797 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.225389 0.654414 0.539745 0 0.13846 0.909428 0.405288 0 0.229031 0.261268 0.80927 0.0924837 0.589717 1.75625 0.257796 0.463778 0 0.874043 0 0.207522 0.68957 0.177143 1.30656 0.706144 0.517524 0.691553 0.508874 0.174861 0.585615 0.316501
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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