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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000427 ID=TCONS_00000427|Name=TCONS_00000427|organism=Clytia hemisphaerica|type=transcript|length=2430bp
ATTGAGCAGAGGTTGTCCTATATCTTATactatttttctcattttctgaC
TGCCTGAAACTGGTTTAATGTCGAAAAACCCATCTTATGCTGTCACcttt
attttttatactttcagaaatgtaacaaaaaataaaaaaacgaaaTTGCA
AAAATTGTATAAAAGGTTCTCCTATTCCCTGGTATATCAAACAGGGAAGG
AGAAAAAAGGAGAATTataccaacaaaacaaaaatggctaCAATAAACAA
AGACAGTGAAGAGGCAAGTGAGAAGCCGGTCAATAAAATCTTGAATGCAC
ATCGGCCTTTACAACCTTGCAAAAGCGCTGCTGGTCGATTACAAGatgag
aaatataaatcaacaaACGACATGGTCAAATCTTCATCAGAGTTATCTGT
TAATGATATAATGCCCAGGAGACGTTCTAGATCAGCTCCTCTAACATTAG
AGGCATCCATAGTAGCTACTGAACTAACACGTTTAAGTGATGCACTTGCA
ACTAAATACACTTTACAGAAAGTATCTGTTTTGAATAGGATTCGAAGACA
CACTCTTGCTTCACCAAGTGAAAGGGAGCACGATAGGAGATCTTTTCATT
TTGATTACCACAATTACCAGAAccttcaaattgaaaatttaacaatCGAA
GAAGGAGAGGAAACTCCTCCTGAATATCAACGTGGAACATCAGTTTAAGC
AAtgaatttgttgattttttggaaatatttagTTTTTTCAATATACATGA
CAGTCTGATTTTGGATGTCATTGACAATTTAGACTGTTATTATTAATTGA
AATGATGGGTCTATATACGTATACACCAAACAAATTTTTAGATTGTTTTA
CCGTAtagtaaatatgatatttttaCTTGCAtattttttgtacttttggT
ACAGTTTCATCTAATACGTCGGTCGTCGGTCGCGTTGTACACTTTTTGAC
TGCTCAATGGAACATTTTGCAGCATTTTTGTAAATTGTTCAGCATTTGTA
CATTATGATAAATTATGATATAAGCCGTATTTTGTACATAAAATTTGagt
attttcgccattttgcgttgattttttttcagacttGAATAATAATTTAT
TTCTTCAGTAAAAACACACTTCAGAgatataattttcttctttaggGAAA
ACTTTTAACTATGCTTAACATTATTGTAGCCTGCTCCTTTCAGATTTATT
TAACCCGGCTGCAAATGAGCTTGAACGTACTATGAAAATGTTAAGTTTCA
GCTGGAGTTAGATATAAAATGGATAATTGATTTTCAAGAAATGTTTGCAT
TTTGTGTTAGGAAAGTTAGGTTAATATATTTGTAATATAGGCGTATTTTA
GTATATAGCTNCCAGAAccttcaaattgaaaatttaacaatCGAAGAAGG
AGAGGAAACTCCTCCTGAATATCAACGTGGAACATCAGTTTAAGCAAtga
atttgttgattttttggaaatatttagTTTTTTCAATATACATGACAGTC
TGATTTTGGATGTCATTGACAATTTAGACTGTTATTATTAATTGAAATGA
TGGGTCTATATACGTATACACCAAACAAATTTTTAGATTGTTTTACCGTA
tagtaaatatgatatttttaCTTGCAtattttttgtacttttggTACAGT
TTCATCTAATACGTCGGTCGTCGGTCGCGTTGTACACTTTTTGACTGCTC
AATGGAACATTTTGCAGCATTTTTGTAAATTGTTCAGCATTTGTACATTA
TGATAAATTATGATATAAGCCGTATTTTGTACATAAAATTTGagtatttt
cgccattttgcgttgattttttttcagacttGAATAATAATTTATTTCTT
CAGTAAAAACACACTTCAGAgatataattttcttctttaggGAAAACTTT
TAACTATGCTTAACATTATTGTAGCCTGCTCCTTTCAGATTTATTTAACC
CGGCTGCAAATGAGCTTGAACGTACTATGAAAATGTTAAGTTTCAGCTGG
AGTTAGATATAAAATGGATAATTGATTTTCAAGAAATGTTTGCATTTTGT
GTTAGGAAAGTTAGGTTAATATATTTGTAATATAGGCGTATTTTAGTATA
TAGCTAATTATTTTCGAATCCTTTTANAGGTTAATATATTTGTAATATAG
GCGTATTTTAGTATATAGCTAATTATTTTCGAATCCTTTTATTTTACTAG
TCATGTTATTgtagttattttgatttttgtagaatagataattattattt
tgaaaaaaaatttcaaaatctataGATAGGCGATACTCTCTCcgaaatat
tttctattttgagaattttgatttgatcatcTTATCTCACTATTATTGTC
TATGTTACTGGTTCAATATGGCAAAGGTTTCAGAgactttccaatttttt
tcggtaatttttgttttaagtGAGCGTGAC Run BLAST on NCBI transcript from alignment at sc0000002:263272..265701+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000427 ID=TCONS_00000427|Name=TCONS_00000427|organism=Clytia hemisphaerica|type=transcript|length=2430bp|location=Sequence derived from alignment at sc0000002:263272..265701+ (Clytia hemisphaerica)
ATTGAGCAGAGGTTGTCCTATATCTTATactatttttctcattttctgaC
TGCCTGAAACTGGTTTAATGTCGAAAAACCCATCTTATGCTGTCACcttt
attttttatactttcagaaatgtaacaaaaaataaaaaaacgaaaTTGCA
AAAATTGTATAAAAGGTTCTCCTATTCCCTGGTATATCAAACAGGGAAGG
AGAAAAAAGGAGAATTataccaacaaaacaaaaatggctaCAATAAACAA
AGACAGTGAAGAGGCAAGTGAGAAGCCGGTCAATAAAATCTTGAATGCAC
ATCGGCCTTTACAACCTTGCAAAAGCGCTGCTGGTCGATTACAAGatgag
aaatataaatcaacaaACGACATGGTCAAATCTTCATCAGAGTTATCTGT
TAATGATATAATGCCCAGGAGACGTTCTAGATCAGCTCCTCTAACATTAG
AGGCATCCATAGTAGCTACTGAACTAACACGTTTAAGTGATGCACTTGCA
ACTAAATACACTTTACAGAAAGTATCTGTTTTGAATAGGATTCGAAGACA
CACTCTTGCTTCACCAAGTGAAAGGGAGCACGATAGGAGATCTTTTCATT
TTGATTACCACAATTACCAGAAccttcaaattgaaaatttaacaatCGAA
GAAGGAGAGGAAACTCCTCCTGAATATCAACGTGGAACATCAGTTTAAGC
AAtgaatttgttgattttttggaaatatttagTTTTTTCAATATACATGA
CAGTCTGATTTTGGATGTCATTGACAATTTAGACTGTTATTATTAATTGA
AATGATGGGTCTATATACGTATACACCAAACAAATTTTTAGATTGTTTTA
CCGTAtagtaaatatgatatttttaCTTGCAtattttttgtacttttggT
ACAGTTTCATCTAATACGTCGGTCGTCGGTCGCGTTGTACACTTTTTGAC
TGCTCAATGGAACATTTTGCAGCATTTTTGTAAATTGTTCAGCATTTGTA
CATTATGATAAATTATGATATAAGCCGTATTTTGTACATAAAATTTGagt
attttcgccattttgcgttgattttttttcagacttGAATAATAATTTAT
TTCTTCAGTAAAAACACACTTCAGAgatataattttcttctttaggGAAA
ACTTTTAACTATGCTTAACATTATTGTAGCCTGCTCCTTTCAGATTTATT
TAACCCGGCTGCAAATGAGCTTGAACGTACTATGAAAATGTTAAGTTTCA
GCTGGAGTTAGATATAAAATGGATAATTGATTTTCAAGAAATGTTTGCAT
TTTGTGTTAGGAAAGTTAGGTTAATATATTTGTAATATAGGCGTATTTTA
GTATATAGCTNCCAGAAccttcaaattgaaaatttaacaatCGAAGAAGG
AGAGGAAACTCCTCCTGAATATCAACGTGGAACATCAGTTTAAGCAAtga
atttgttgattttttggaaatatttagTTTTTTCAATATACATGACAGTC
TGATTTTGGATGTCATTGACAATTTAGACTGTTATTATTAATTGAAATGA
TGGGTCTATATACGTATACACCAAACAAATTTTTAGATTGTTTTACCGTA
tagtaaatatgatatttttaCTTGCAtattttttgtacttttggTACAGT
TTCATCTAATACGTCGGTCGTCGGTCGCGTTGTACACTTTTTGACTGCTC
AATGGAACATTTTGCAGCATTTTTGTAAATTGTTCAGCATTTGTACATTA
TGATAAATTATGATATAAGCCGTATTTTGTACATAAAATTTGagtatttt
cgccattttgcgttgattttttttcagacttGAATAATAATTTATTTCTT
CAGTAAAAACACACTTCAGAgatataattttcttctttaggGAAAACTTT
TAACTATGCTTAACATTATTGTAGCCTGCTCCTTTCAGATTTATTTAACC
CGGCTGCAAATGAGCTTGAACGTACTATGAAAATGTTAAGTTTCAGCTGG
AGTTAGATATAAAATGGATAATTGATTTTCAAGAAATGTTTGCATTTTGT
GTTAGGAAAGTTAGGTTAATATATTTGTAATATAGGCGTATTTTAGTATA
TAGCTAATTATTTTCGAATCCTTTTANAGGTTAATATATTTGTAATATAG
GCGTATTTTAGTATATAGCTAATTATTTTCGAATCCTTTTATTTTACTAG
TCATGTTATTgtagttattttgatttttgtagaatagataattattattt
tgaaaaaaaatttcaaaatctataGATAGGCGATACTCTCTCcgaaatat
tttctattttgagaattttgatttgatcatcTTATCTCACTATTATTGTC
TATGTTACTGGTTCAATATGGCAAAGGTTTCAGAgactttccaatttttt
tcggtaatttttgttttaagtGAGCGTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000427-exon-sc0000002-1491911889:263272..265701 | TCONS_00000427-exon-sc0000002-1491911889:263272..265701 | Clytia hemisphaerica | exon |
| TCONS_00000427-exon-sc0000002-1510915933:263272..265701 | TCONS_00000427-exon-sc0000002-1510915933:263272..265701 | Clytia hemisphaerica | exon |
| TCONS_00000427-exon-sc0000002-1575043694:263272..265701 | TCONS_00000427-exon-sc0000002-1575043694:263272..265701 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:263272..265701 + |
Blast
The following BLAST results are available for this feature:
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