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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000426 ID=TCONS_00000426|Name=TCONS_00000426|organism=Clytia hemisphaerica|type=transcript|length=1592bp
ATTGAGCAGAGGTTGTCCTATATCTTATactatttttctcattttctgaC
TGCCTGAAACTGGTTTAATGTCGAAAAACCCATCTTATGCTGTCACcttt
attttttatactttcagaaatgtaacaaaaaataaaaaaacgaaaTTGCA
AAAATTGTATAAAAGGTTCTCCTATTCCCTGGTATATCAAACAGGGAAGG
AGAAAAAAGGAGAATTataccaacaaaacaaaaatggctaCAATAAACAA
AGACAGTGAAGAGGCAAGTGAGAAGCCGGTCAATAAAATCTTGAATGCAC
ATCGGCCTTTACAACCTTGCAAAAGCGCTGCTGGTCGATTACAAGatgag
aaatataaatcaacaaACGACATGGTCAAATCTTCATCAGAGTTATCTGT
TAATGATATAATGCCCAGGAGACGTTCTAGATCAGCTCCTCTAACATTAG
AGGCATCCATAGTAGCTACTGAACTAACACGTTTAAGTGATGCACTTGCA
ACTAAATACACTTTACAGAAAGTATCTGTTTTGAATAGGATTCGAAGACA
CACTCTTGCTTCACCAAGTGAAAGGGAGCACGATAGGAGATCTTTTCATT
TTGATTACCACAATTACCAGAAccttcaaattgaaaatttaacaatCGAA
GAAGGAGAGGAAACTCCTCCTGAATATCAACGTGGAACATCAGTTTAAGC
AAtgaatttgttgattttttggaaatatttagTTTTTTCAATATACATGA
CAGTCTGATTTTGGATGTCATTGACAATTTAGACTGTTATTATTAATTGA
AATGATGGGTCTATATACGTATACACCAAACAAATTTTTAGATTGTTTTA
CCGTAtagtaaatatgatatttttaCTTGCAtattttttgtacttttggT
ACAGTTTCATCTAATACGTCGGTCGTCGGTCGCGTTGTACACTTTTTGAC
TGCTCAATGGAACATTTTGCAGCATTTTTGTAAATTGTTCAGCATTTGTA
CATTATGATAAATTATGATATAAGCCGTATTTTGTACATAAAATTTGagt
attttcgccattttgcgttgattttttttcagacttGAATAATAATTTAT
TTCTTCAGTAAAAACACACTTCAGAgatataattttcttctttaggGAAA
ACTTTTAACTATGCTTAACATTATTGTAGCCTGCTCCTTTCAGATTTATT
TAACCCGGCTGCAAATGAGCTTGAACGTACTATGAAAATGTTAAGTTTCA
GCTGGAGTTAGATATAAAATGGATAATTGATTTTCAAGAAATGTTTGCAT
TTTGTGTTAGGAAAGTTAGGTTAATATATTTGTAATATAGGCGTATTTTA
GTATATAGCTAATTATTTTCGAATCCTTTTATTTTACTAGTCATGTTATT
gtagttattttgatttttgtagaatagataattattattttgaaaaaaaa
tttcaaaatctataGATAGGCGATACTCTCTCcgaaatattttctatttt
gagaattttgatttgatcatcTTATCTCACTATTATTGTCTATGTTACTG
GTTCAATATGGCAAAGGTTTCAGAgactttccaatttttttc Run BLAST on NCBI protein sequence of TCONS_00000426-protein >TCONS_00000426-protein ID=TCONS_00000426-protein|Name=TCONS_00000426-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MATINKDSEEASEKPVNKILNAHRPLQPCKSAAGRLQDEKYKSTNDMVKS
SSELSVNDIMPRRRSRSAPLTLEASIVATELTRLSDALATKYTLQKVSVL
NRIRRHTLASPSEREHDRRSFHFDYHNYQNLQIENLTIEEGEETPPEYQR
GTSV Run BLAST on NCBI transcript from alignment at sc0000002:263272..265673+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000426 ID=TCONS_00000426|Name=TCONS_00000426|organism=Clytia hemisphaerica|type=transcript|length=2402bp|location=Sequence derived from alignment at sc0000002:263272..265673+ (Clytia hemisphaerica)
ATTGAGCAGAGGTTGTCCTATATCTTATactatttttctcattttctgaC
TGCCTGAAACTGGTTTAATGTCGAAAAACCCATCTTATGCTGTCACcttt
attttttatactttcagaaatgtaacaaaaaataaaaaaacgaaaTTGCA
AAAATTGTATAAAAGGTTCTCCTATTCCCTGGTATATCAAACAGGGAAGG
AGAAAAAAGGAGAATTataccaacaaaacaaaaatggctaCAATAAACAA
AGACAGTGAAGAGGCAAGTGAGAAGCCGGTCAATAAAATCTTGAATGCAC
ATCGGCCTTTACAACCTTGCAAAAGCGCTGCTGGTCGATTACAAGatgag
aaatataaatcaacaaACGACATGGTCAAATCTTCATCAGAGTTATCTGT
TAATGATATAATGCCCAGGAGACGTTCTAGATCAGCTCCTCTAACATTAG
AGGCATCCATAGTAGCTACTGAACTAACACGTTTAAGTGATGCACTTGCA
ACTAAATACACTTTACAGAAAGTATCTGTTTTGAATAGGATTCGAAGACA
CACTCTTGCTTCACCAAGTGAAAGGGAGCACGATAGGAGATCTTTTCATT
TTGATTACCACAATTACCAGAAccttcaaattgaaaatttaacaatCGAA
GAAGGAGAGGAAACTCCTCCTGAATATCAACGTGGAACATCAGTTTAAGC
AAtgaatttgttgattttttggaaatatttagTTTTTTCAATATACATGA
CAGTCTGATTTTGGATGTCATTGACAATTTAGACTGTTATTATTAATTGA
AATGATGGGTCTATATACGTATACACCAAACAAATTTTTAGATTGTTTTA
CCGTAtagtaaatatgatatttttaCTTGCAtattttttgtacttttggT
ACAGTTTCATCTAATACGTCGGTCGTCGGTCGCGTTGTACACTTTTTGAC
TGCTCAATGGAACATTTTGCAGCATTTTTGTAAATTGTTCAGCATTTGTA
CATTATGATAAATTATGATATAAGCCGTATTTTGTACATAAAATTTGagt
attttcgccattttgcgttgattttttttcagacttGAATAATAATTTAT
TTCTTCAGTAAAAACACACTTCAGAgatataattttcttctttaggGAAA
ACTTTTAACTATGCTTAACATTATTGTAGCCTGCTCCTTTCAGATTTATT
TAACCCGGCTGCAAATGAGCTTGAACGTACTATGAAAATGTTAAGTTTCA
GCTGGAGTTAGATATAAAATGGATAATTGATTTTCAAGAAATGTTTGCAT
TTTGTGTTAGGAAAGTTAGGTTAATATATTTGTAATATAGGCGTATTTTA
GTATATAGCTNCCAGAAccttcaaattgaaaatttaacaatCGAAGAAGG
AGAGGAAACTCCTCCTGAATATCAACGTGGAACATCAGTTTAAGCAAtga
atttgttgattttttggaaatatttagTTTTTTCAATATACATGACAGTC
TGATTTTGGATGTCATTGACAATTTAGACTGTTATTATTAATTGAAATGA
TGGGTCTATATACGTATACACCAAACAAATTTTTAGATTGTTTTACCGTA
tagtaaatatgatatttttaCTTGCAtattttttgtacttttggTACAGT
TTCATCTAATACGTCGGTCGTCGGTCGCGTTGTACACTTTTTGACTGCTC
AATGGAACATTTTGCAGCATTTTTGTAAATTGTTCAGCATTTGTACATTA
TGATAAATTATGATATAAGCCGTATTTTGTACATAAAATTTGagtatttt
cgccattttgcgttgattttttttcagacttGAATAATAATTTATTTCTT
CAGTAAAAACACACTTCAGAgatataattttcttctttaggGAAAACTTT
TAACTATGCTTAACATTATTGTAGCCTGCTCCTTTCAGATTTATTTAACC
CGGCTGCAAATGAGCTTGAACGTACTATGAAAATGTTAAGTTTCAGCTGG
AGTTAGATATAAAATGGATAATTGATTTTCAAGAAATGTTTGCATTTTGT
GTTAGGAAAGTTAGGTTAATATATTTGTAATATAGGCGTATTTTAGTATA
TAGCTAATTATTTTCGAATCCTTTTANAGGTTAATATATTTGTAATATAG
GCGTATTTTAGTATATAGCTAATTATTTTCGAATCCTTTTATTTTACTAG
TCATGTTATTgtagttattttgatttttgtagaatagataattattattt
tgaaaaaaaatttcaaaatctataGATAGGCGATACTCTCTCcgaaatat
tttctattttgagaattttgatttgatcatcTTATCTCACTATTATTGTC
TATGTTACTGGTTCAATATGGCAAAGGTTTCAGAgactttccaatttttt
tc Coding sequence (CDS) from alignment at sc0000002:263272..265673+ >TCONS_00000426 ID=TCONS_00000426|Name=TCONS_00000426|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000002:263272..265673+ (Clytia hemisphaerica)
atggctaCAATAAACAAAGACAGTGAAGAGGCAAGTGAGAAGCCGGTCAA
TAAAATCTTGAATGCACATCGGCCTTTACAACCTTGCAAAAGCGCTGCTG
GTCGATTACAAGatgagaaatataaatcaacaaACGACATGGTCAAATCT
TCATCAGAGTTATCTGTTAATGATATAATGCCCAGGAGACGTTCTAGATC
AGCTCCTCTAACATTAGAGGCATCCATAGTAGCTACTGAACTAACACGTT
TAAGTGATGCACTTGCAACTAAATACACTTTACAGAAAGTATCTGTTTTG
AATAGGATTCGAAGACACACTCTTGCTTCACCAAGTGAAAGGGAGCACGA
TAGGAGATCTTTTCATTTTGATTACCACAATTACCAGAAccttcaaattg
aaaatttaacaatCGAAGAAGGAGAGGAAACTCCTCCTGAATATCAACGT
GGAACATCAGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000426-exon-sc0000002-1491911889:263272..264611 | TCONS_00000426-exon-sc0000002-1491911889:263272..264611 | Clytia hemisphaerica | exon |
| TCONS_00000426-exon-sc0000002-1510915933:263272..264611 | TCONS_00000426-exon-sc0000002-1510915933:263272..264611 | Clytia hemisphaerica | exon |
| TCONS_00000426-exon-sc0000002-1575043694:263272..264611 | TCONS_00000426-exon-sc0000002-1575043694:263272..264611 | Clytia hemisphaerica | exon |
| TCONS_00000426-exon-sc0000002-1491911889:265422..265673 | TCONS_00000426-exon-sc0000002-1491911889:265422..265673 | Clytia hemisphaerica | exon |
| TCONS_00000426-exon-sc0000002-1510915933:265422..265673 | TCONS_00000426-exon-sc0000002-1510915933:265422..265673 | Clytia hemisphaerica | exon |
| TCONS_00000426-exon-sc0000002-1575043694:265422..265673 | TCONS_00000426-exon-sc0000002-1575043694:265422..265673 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:263272..265673 + |
Blast
The following BLAST results are available for this feature:
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