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TCONS_00000426 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000426
Unique NameTCONS_00000426
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000426 ID=TCONS_00000426|Name=TCONS_00000426|organism=Clytia hemisphaerica|type=transcript|length=1592bp
ATTGAGCAGAGGTTGTCCTATATCTTATactatttttctcattttctgaC
TGCCTGAAACTGGTTTAATGTCGAAAAACCCATCTTATGCTGTCACcttt
attttttatactttcagaaatgtaacaaaaaataaaaaaacgaaaTTGCA
AAAATTGTATAAAAGGTTCTCCTATTCCCTGGTATATCAAACAGGGAAGG
AGAAAAAAGGAGAATTataccaacaaaacaaaaatggctaCAATAAACAA
AGACAGTGAAGAGGCAAGTGAGAAGCCGGTCAATAAAATCTTGAATGCAC
ATCGGCCTTTACAACCTTGCAAAAGCGCTGCTGGTCGATTACAAGatgag
aaatataaatcaacaaACGACATGGTCAAATCTTCATCAGAGTTATCTGT
TAATGATATAATGCCCAGGAGACGTTCTAGATCAGCTCCTCTAACATTAG
AGGCATCCATAGTAGCTACTGAACTAACACGTTTAAGTGATGCACTTGCA
ACTAAATACACTTTACAGAAAGTATCTGTTTTGAATAGGATTCGAAGACA
CACTCTTGCTTCACCAAGTGAAAGGGAGCACGATAGGAGATCTTTTCATT
TTGATTACCACAATTACCAGAAccttcaaattgaaaatttaacaatCGAA
GAAGGAGAGGAAACTCCTCCTGAATATCAACGTGGAACATCAGTTTAAGC
AAtgaatttgttgattttttggaaatatttagTTTTTTCAATATACATGA
CAGTCTGATTTTGGATGTCATTGACAATTTAGACTGTTATTATTAATTGA
AATGATGGGTCTATATACGTATACACCAAACAAATTTTTAGATTGTTTTA
CCGTAtagtaaatatgatatttttaCTTGCAtattttttgtacttttggT
ACAGTTTCATCTAATACGTCGGTCGTCGGTCGCGTTGTACACTTTTTGAC
TGCTCAATGGAACATTTTGCAGCATTTTTGTAAATTGTTCAGCATTTGTA
CATTATGATAAATTATGATATAAGCCGTATTTTGTACATAAAATTTGagt
attttcgccattttgcgttgattttttttcagacttGAATAATAATTTAT
TTCTTCAGTAAAAACACACTTCAGAgatataattttcttctttaggGAAA
ACTTTTAACTATGCTTAACATTATTGTAGCCTGCTCCTTTCAGATTTATT
TAACCCGGCTGCAAATGAGCTTGAACGTACTATGAAAATGTTAAGTTTCA
GCTGGAGTTAGATATAAAATGGATAATTGATTTTCAAGAAATGTTTGCAT
TTTGTGTTAGGAAAGTTAGGTTAATATATTTGTAATATAGGCGTATTTTA
GTATATAGCTAATTATTTTCGAATCCTTTTATTTTACTAGTCATGTTATT
gtagttattttgatttttgtagaatagataattattattttgaaaaaaaa
tttcaaaatctataGATAGGCGATACTCTCTCcgaaatattttctatttt
gagaattttgatttgatcatcTTATCTCACTATTATTGTCTATGTTACTG
GTTCAATATGGCAAAGGTTTCAGAgactttccaatttttttc
Run BLAST on NCBI

protein sequence of TCONS_00000426-protein

>TCONS_00000426-protein ID=TCONS_00000426-protein|Name=TCONS_00000426-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MATINKDSEEASEKPVNKILNAHRPLQPCKSAAGRLQDEKYKSTNDMVKS
SSELSVNDIMPRRRSRSAPLTLEASIVATELTRLSDALATKYTLQKVSVL
NRIRRHTLASPSEREHDRRSFHFDYHNYQNLQIENLTIEEGEETPPEYQR
GTSV
Run BLAST on NCBI

transcript from alignment at sc0000002:263272..265673+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000426 ID=TCONS_00000426|Name=TCONS_00000426|organism=Clytia hemisphaerica|type=transcript|length=2402bp|location=Sequence derived from alignment at sc0000002:263272..265673+ (Clytia hemisphaerica)
ATTGAGCAGAGGTTGTCCTATATCTTATactatttttctcattttctgaC TGCCTGAAACTGGTTTAATGTCGAAAAACCCATCTTATGCTGTCACcttt attttttatactttcagaaatgtaacaaaaaataaaaaaacgaaaTTGCA AAAATTGTATAAAAGGTTCTCCTATTCCCTGGTATATCAAACAGGGAAGG AGAAAAAAGGAGAATTataccaacaaaacaaaaatggctaCAATAAACAA AGACAGTGAAGAGGCAAGTGAGAAGCCGGTCAATAAAATCTTGAATGCAC ATCGGCCTTTACAACCTTGCAAAAGCGCTGCTGGTCGATTACAAGatgag aaatataaatcaacaaACGACATGGTCAAATCTTCATCAGAGTTATCTGT TAATGATATAATGCCCAGGAGACGTTCTAGATCAGCTCCTCTAACATTAG AGGCATCCATAGTAGCTACTGAACTAACACGTTTAAGTGATGCACTTGCA ACTAAATACACTTTACAGAAAGTATCTGTTTTGAATAGGATTCGAAGACA CACTCTTGCTTCACCAAGTGAAAGGGAGCACGATAGGAGATCTTTTCATT TTGATTACCACAATTACCAGAAccttcaaattgaaaatttaacaatCGAA GAAGGAGAGGAAACTCCTCCTGAATATCAACGTGGAACATCAGTTTAAGC AAtgaatttgttgattttttggaaatatttagTTTTTTCAATATACATGA CAGTCTGATTTTGGATGTCATTGACAATTTAGACTGTTATTATTAATTGA AATGATGGGTCTATATACGTATACACCAAACAAATTTTTAGATTGTTTTA CCGTAtagtaaatatgatatttttaCTTGCAtattttttgtacttttggT ACAGTTTCATCTAATACGTCGGTCGTCGGTCGCGTTGTACACTTTTTGAC TGCTCAATGGAACATTTTGCAGCATTTTTGTAAATTGTTCAGCATTTGTA CATTATGATAAATTATGATATAAGCCGTATTTTGTACATAAAATTTGagt attttcgccattttgcgttgattttttttcagacttGAATAATAATTTAT TTCTTCAGTAAAAACACACTTCAGAgatataattttcttctttaggGAAA ACTTTTAACTATGCTTAACATTATTGTAGCCTGCTCCTTTCAGATTTATT TAACCCGGCTGCAAATGAGCTTGAACGTACTATGAAAATGTTAAGTTTCA GCTGGAGTTAGATATAAAATGGATAATTGATTTTCAAGAAATGTTTGCAT TTTGTGTTAGGAAAGTTAGGTTAATATATTTGTAATATAGGCGTATTTTA GTATATAGCTNCCAGAAccttcaaattgaaaatttaacaatCGAAGAAGG AGAGGAAACTCCTCCTGAATATCAACGTGGAACATCAGTTTAAGCAAtga atttgttgattttttggaaatatttagTTTTTTCAATATACATGACAGTC TGATTTTGGATGTCATTGACAATTTAGACTGTTATTATTAATTGAAATGA TGGGTCTATATACGTATACACCAAACAAATTTTTAGATTGTTTTACCGTA tagtaaatatgatatttttaCTTGCAtattttttgtacttttggTACAGT TTCATCTAATACGTCGGTCGTCGGTCGCGTTGTACACTTTTTGACTGCTC AATGGAACATTTTGCAGCATTTTTGTAAATTGTTCAGCATTTGTACATTA TGATAAATTATGATATAAGCCGTATTTTGTACATAAAATTTGagtatttt cgccattttgcgttgattttttttcagacttGAATAATAATTTATTTCTT CAGTAAAAACACACTTCAGAgatataattttcttctttaggGAAAACTTT TAACTATGCTTAACATTATTGTAGCCTGCTCCTTTCAGATTTATTTAACC CGGCTGCAAATGAGCTTGAACGTACTATGAAAATGTTAAGTTTCAGCTGG AGTTAGATATAAAATGGATAATTGATTTTCAAGAAATGTTTGCATTTTGT GTTAGGAAAGTTAGGTTAATATATTTGTAATATAGGCGTATTTTAGTATA TAGCTAATTATTTTCGAATCCTTTTANAGGTTAATATATTTGTAATATAG GCGTATTTTAGTATATAGCTAATTATTTTCGAATCCTTTTATTTTACTAG TCATGTTATTgtagttattttgatttttgtagaatagataattattattt tgaaaaaaaatttcaaaatctataGATAGGCGATACTCTCTCcgaaatat tttctattttgagaattttgatttgatcatcTTATCTCACTATTATTGTC TATGTTACTGGTTCAATATGGCAAAGGTTTCAGAgactttccaatttttt tc

Coding sequence (CDS) from alignment at sc0000002:263272..265673+

>TCONS_00000426 ID=TCONS_00000426|Name=TCONS_00000426|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000002:263272..265673+ (Clytia hemisphaerica)
atggctaCAATAAACAAAGACAGTGAAGAGGCAAGTGAGAAGCCGGTCAA
TAAAATCTTGAATGCACATCGGCCTTTACAACCTTGCAAAAGCGCTGCTG
GTCGATTACAAGatgagaaatataaatcaacaaACGACATGGTCAAATCT
TCATCAGAGTTATCTGTTAATGATATAATGCCCAGGAGACGTTCTAGATC
AGCTCCTCTAACATTAGAGGCATCCATAGTAGCTACTGAACTAACACGTT
TAAGTGATGCACTTGCAACTAAATACACTTTACAGAAAGTATCTGTTTTG
AATAGGATTCGAAGACACACTCTTGCTTCACCAAGTGAAAGGGAGCACGA
TAGGAGATCTTTTCATTTTGATTACCACAATTACCAGAAccttcaaattg
aaaatttaacaatCGAAGAAGGAGAGGAAACTCCTCCTGAATATCAACGT
GGAACATCAGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000276XLOC_000276Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000426-proteinTCONS_00000426-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000426-exon-sc0000002-1491911889:263272..264611TCONS_00000426-exon-sc0000002-1491911889:263272..264611Clytia hemisphaericaexon
TCONS_00000426-exon-sc0000002-1510915933:263272..264611TCONS_00000426-exon-sc0000002-1510915933:263272..264611Clytia hemisphaericaexon
TCONS_00000426-exon-sc0000002-1575043694:263272..264611TCONS_00000426-exon-sc0000002-1575043694:263272..264611Clytia hemisphaericaexon
TCONS_00000426-exon-sc0000002-1491911889:265422..265673TCONS_00000426-exon-sc0000002-1491911889:265422..265673Clytia hemisphaericaexon
TCONS_00000426-exon-sc0000002-1510915933:265422..265673TCONS_00000426-exon-sc0000002-1510915933:265422..265673Clytia hemisphaericaexon
TCONS_00000426-exon-sc0000002-1575043694:265422..265673TCONS_00000426-exon-sc0000002-1575043694:265422..265673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:263272..265673 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.86181 9.13907e-06 0.405151 1.16492 5.83929 4.93933 7.52204 9.44654 8.14478 7.56406 9.26375 6.90729 5.16839 6.78127 4.32062 3.97176 8.17741 6.29039 5.32738 4.23283 9.99318 7.4783 4.28085 6.82086 9.2361 10.7863 6.19956 4.95478 4.37465 4.40667
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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