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TCONS_00000421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000421
Unique NameTCONS_00000421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000421 ID=TCONS_00000421|Name=TCONS_00000421|organism=Clytia hemisphaerica|type=transcript|length=801bp
AATATCAGTATGCAACTACAAATCTAGGAGTGAGTCAGATGGTAAATGCA
GgatTCATTCGATTTACTATTCTGGGAAAAACTATTTTGTGGAAAGAAAT
TGTAGAGTGTGAAAATGGCGTCTTTCCAATTAACTTTATCAAGCCTAACT
CTATTATTGGCGCTCATGGTAAAAATGTCACATGAAAGATCATTCACAAA
GCTGGGGATATTCAAGGCGACAGATCAAACTAAGAAAGTATTCATGAATC
TGGATAGAGActtgaataatttaaaaaagctttcaaCCATCTTAAAATTG
AGAAGTTTGAATCGGCTTTCAACAACACAGGAGGAACTTGGCAAGAGGAT
TTCGTTTGAAAAACAAGGTGTTTTTcataaattgatgaaaataaagaaac
tatCGCAAGAGGAGGAGATACAACAACCGAGCCCATCTTCGAGAAAGATA
AATATGGACCCGTCAGAGCAACAAAAGATGGCACTTCAGTCCANCTTcga
gaaagaaaaatatggaCCCGTCAGAGCAACAAAAGATGGCACTTCAGTCC
AATCAAAAAATGTCAGACCCTAACAGAGTTATTGGACATTATTGTTATTA
TACTCAAGTTTATAAATGTCAAAGTATAATGGGCAAGAAATATTGTTGGA
AAGAAAGAGAGCAAATTTGTGGACTGTAAAatctaaatgaaaaagttttt
ctgaaTGAAATACGTGAAGTTATTTTCAAGCTATCTAGACGGATTTTTTT
TAGTCTTTTTATAGTGTTTCTTtatgaaagaaatatttcacAAGATTATG
G
Run BLAST on NCBI

protein sequence of TCONS_00000421-protein

>TCONS_00000421-protein ID=TCONS_00000421-protein|Name=TCONS_00000421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MASFQLTLSSLTLLLALMVKMSHERSFTKLGIFKATDQTKKVFMNLDRDL
NNLKKLSTILKLRSLNRLSTTQEELGKRISFEKQGVFHKLMKIKKLSQEE
EIQQPSPSSRKINMDPSEQQKMALQSXFEKEKYGPVRATKDGTSVQSKNV
RP
Run BLAST on NCBI

transcript from alignment at sc0000002:233104..234472+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000421 ID=TCONS_00000421|Name=TCONS_00000421|organism=Clytia hemisphaerica|type=transcript|length=1369bp|location=Sequence derived from alignment at sc0000002:233104..234472+ (Clytia hemisphaerica)
AATATCAGTATGCAACTACAAATCTAGGAGTGAGTCAGATGGTAAATGCA GGTAGGTAAATCAACGTAGTgtaagcccgaagagctagaatcaaatcttt aacctttctcaggcaagaaaaagtgaagccttaaaatatgcgccgtattt ttgacgacgggttgtatctagcgattcctttgtttccgagtgatatcttt ttcgaaatttaggtgtagattttagtttcaatctgtcatttgtgtaaaaa ccaggtggACTGCGCTAGGCCGTGCAactttggcttcaaatcctagtaag gagattcgattctagccatTCGGGTTTATACATCATTGGGTGAATGTCAA TGTCAAAATAgatctctggcgtccatcagtaacgtaGATAAAGCCTGGTG CAATAAATATAAGCTTTTGTAAACACATTATTGACATTAGGGTAAAGATT TTGACACCTTGATCGCGATTTGGTGGTTTTCTACAGAAACTGCCTCATAT TTTATATAAATATTCTTTGAATACAGAAACTTCTTTGTTGTAGAAAAGAG GGTATTTCTCGTACAAAAATTAGAGGAAGGTTTTTAAAACGATtcgtgta atacacttttttattttaggatTCATTCGATTTACTATTCTGGGAAAAAC TATTTTGTGGAAAGAAATTGTAGAGTGTGAAAATGGCGTCTTTCCAATTA ACTTTATCAAGCCTAACTCTATTATTGGCGCTCATGGTAAAAATGTCACA TGAAAGATCATTCACAAAGCTGGGGATATTCAAGGCGACAGATCAAACTA AGAAAGTATTCATGAATCTGGATAGAGActtgaataatttaaaaaagctt tcaaCCATCTTAAAATTGAGAAGTTTGAATCGGCTTTCAACAACACAGGA GGAACTTGGCAAGAGGATTTCGTTTGAAAAACAAGGTGTTTTTcataaat tgatgaaaataaagaaactatCGCAAGAGGAGGAGATACAACAACCGAGC CCATCTTCGAGAAAGATAAATATGGACCCGTCAGAGCAACAAAAGATGGC ACTTCAGTCCANCTTcgagaaagaaaaatatggaCCCGTCAGAGCAACAA AAGATGGCACTTCAGTCCAATCAAAAAATGTCAGACCCTAACAGAGTTAT TGGACATTATTGTTATTATACTCAAGTTTATAAATGTCAAAGTATAATGG GCAAGAAATATTGTTGGAAAGAAAGAGAGCAAATTTGTGGACTGTAAAat ctaaatgaaaaagtttttctgaaTGAAATACGTGAAGTTATTTTCAAGCT ATCTAGACGGATTTTTTTTAGTCTTTTTATAGTGTTTCTTtatgaaagaa atatttcacAAGATTATGG

Coding sequence (CDS) from alignment at sc0000002:233104..234472+

>TCONS_00000421 ID=TCONS_00000421|Name=TCONS_00000421|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0000002:233104..234472+ (Clytia hemisphaerica)
ATGGCGTCTTTCCAATTAACTTTATCAAGCCTAACTCTATTATTGGCGCT
CATGGTAAAAATGTCACATGAAAGATCATTCACAAAGCTGGGGATATTCA
AGGCGACAGATCAAACTAAGAAAGTATTCATGAATCTGGATAGAGActtg
aataatttaaaaaagctttcaaCCATCTTAAAATTGAGAAGTTTGAATCG
GCTTTCAACAACACAGGAGGAACTTGGCAAGAGGATTTCGTTTGAAAAAC
AAGGTGTTTTTcataaattgatgaaaataaagaaactatCGCAAGAGGAG
GAGATACAACAACCGAGCCCATCTTCGAGAAAGATAAATATGGACCCGTC
AGAGCAACAAAAGATGGCACTTCAGTCCANCTTcgagaaagaaaaatatg
gaCCCGTCAGAGCAACAAAAGATGGCACTTCAGTCCAATCAAAAAATGTC
AGACCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000273XLOC_000273Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000421-proteinTCONS_00000421-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000421-exon-sc0000002-1491911889:233104..233154TCONS_00000421-exon-sc0000002-1491911889:233104..233154Clytia hemisphaericaexon
TCONS_00000421-exon-sc0000002-1510915933:233104..233154TCONS_00000421-exon-sc0000002-1510915933:233104..233154Clytia hemisphaericaexon
TCONS_00000421-exon-sc0000002-1575043694:233104..233154TCONS_00000421-exon-sc0000002-1575043694:233104..233154Clytia hemisphaericaexon
TCONS_00000421-exon-sc0000002-1491911889:233723..234472TCONS_00000421-exon-sc0000002-1491911889:233723..234472Clytia hemisphaericaexon
TCONS_00000421-exon-sc0000002-1510915933:233723..234472TCONS_00000421-exon-sc0000002-1510915933:233723..234472Clytia hemisphaericaexon
TCONS_00000421-exon-sc0000002-1575043694:233723..234472TCONS_00000421-exon-sc0000002-1575043694:233723..234472Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:233104..234472 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.179786 0 0 0 1.45471 1.38266 1.84914 2.0918 3.18154 2.37702 5.76443 3.55218 0.876846 0.993396 0.476412 0.474745 0.944752 0.599449 0.382233 0.133326 1.5065 1.10223 0.68713 1.06199 1.22251 1.49303 0.0930923 0.263095 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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