TCONS_00000392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000392
Unique NameTCONS_00000392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000392 ID=TCONS_00000392|Name=TCONS_00000392|organism=Clytia hemisphaerica|type=transcript|length=352bp
agaaaagcgCTATGTTTTGTCCAACGAAGATCGAATCCCTGAATTGCAGA
AGCCAAATCTAATTTACAAGCTATCGTGCCCAGGCTGTGGAAAAGACTAC
ATTGGTAAGACTGACCGTTGTCTGTCCATTCGCTTAAAGGAGCATGGTAC
CCGAGACAATCAGCCAATGAACTTGCATTTGAAAAACTGCCAAGATTTCT
ATCATTATGTTTCATTGTTTAACTTGCCATCGTTGATTGATGACAATTTA
GAGACAATAGAGTATGATGACCATTTGCTAAATGCTGTATTTGATAATTA
TTCTATTGTAGATTCTTCTTTGTCATGGTCACATTTAATATTCTTAGAga
ca
Run BLAST on NCBI

protein sequence of TCONS_00000392-protein

>TCONS_00000392-protein ID=TCONS_00000392-protein|Name=TCONS_00000392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
EKRYVLSNEDRIPELQKPNLIYKLSCPGCGKDYIGKTDRCLSIRLKEHGT
RDNQPMNLHLKNCQDFYHYVSLFNLPSLIDDNLETIEYDDHLLNAVFDNY
SIVDSSLSWSHLIFLET
Run BLAST on NCBI

transcript from alignment at sc0000001:2886611..2886962

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000392 ID=TCONS_00000392|Name=TCONS_00000392|organism=Clytia hemisphaerica|type=transcript|length=352bp|location=Sequence derived from alignment at sc0000001:2886611..2886962 (Clytia hemisphaerica)
tgtcTCTAAGAATATTAAATGTGACCATGACAAAGAAGAATCTACAATAG
AATAATTATCAAATACAGCATTTAGCAAATGGTCATCATACTCTATTGTC
TCTAAATTGTCATCAATCAACGATGGCAAGTTAAACAATGAAACATAATG
ATAGAAATCTTGGCAGTTTTTCAAATGCAAGTTCATTGGCTGATTGTCTC
GGGTACCATGCTCCTTTAAGCGAATGGACAGACAACGGTCAGTCTTACCA
ATGTAGTCTTTTCCACAGCCTGGGCACGATAGCTTGTAAATTAGATTTGG
CTTCTGCAATTCAGGGATTCGATCTTCGTTGGACAAAACATAGcgctttt
ct

Coding sequence (CDS) from alignment at sc0000001:2886611..2886962

>TCONS_00000392 ID=TCONS_00000392|Name=TCONS_00000392|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0000001:2886611..2886962 (Clytia hemisphaerica)
tgtcTCTAAGAATATTAAATGTGACCATGACAAAGAAGAATCTACAATAG
AATAATTATCAAATACAGCATTTAGCAAATGGTCATCATACTCTATTGTC
TCTAAATTGTCATCAATCAACGATGGCAAGTTAAACAATGAAACATAATG
ATAGAAATCTTGGCAGTTTTTCAAATGCAAGTTCATTGGCTGATTGTCTC
GGGTACCATGCTCCTTTAAGCGAATGGACAGACAACGGTCAGTCTTACCA
ATGTAGTCTTTTCCACAGCCTGGGCACGATAGCTTGTAAATTAGATTTGG
CTTCTGCAATTCAGGGATTCGATCTTCGTTGGACAAAACATAGcgctttt
c
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000266XLOC_000266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000392-exon-sc0000001-1491911889:2886611..2886962TCONS_00000392-exon-sc0000001-1491911889:2886611..2886962Clytia hemisphaericaexon
TCONS_00000392-exon-sc0000001-1510915933:2886611..2886962TCONS_00000392-exon-sc0000001-1510915933:2886611..2886962Clytia hemisphaericaexon
TCONS_00000392-exon-sc0000001-1575043694:2886611..2886962TCONS_00000392-exon-sc0000001-1575043694:2886611..2886962Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000392-proteinTCONS_00000392-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2886611..2886962 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.62794	0.538751	2.90342	0.627619	0	0	0	0.924289	0.209973	0	0	0	0.500918	0	0.282572	0.303678	0.186548	0.190895	0.0752978	0	0.241641	0	0.286249	0	0	0	0.341907	0	0.493275	0.281114
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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