Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000391 ID=TCONS_00000391|Name=TCONS_00000391|organism=Clytia hemisphaerica|type=transcript|length=793bp
TTTCAGTCCTTACATTACTGGAGTTGGTGGAACTGGATTCTCAAACACTT
TAACAGTTGGCCCTGAATTCGCCTACGAGATTAGCGGCGGAGGTTTCAGC
AATGTTTTCGATCAACCTAAATATCAAACAGATGCAGTAGCAGCCTATAT
GCATACAGAAGGCGTCCCACCAAAAGATCTCCGCAACAAAACAGGTCATG
CTTACCCTGGCATCGCTGCTTTATGTCGTCATTTCTGGGTCGTCAATAAT
CGGGTGCCAGTTCCAGGGGTCACGGGCACCTCCGCTTCGACCCCATCCGT
CGGCGGTACCATTAGCATGGTAAACGAGCACCGACTTAATGCCAATAAGC
CGGTCATGGGATTCCTTAACCCATTTATTTACAAGAATCCACAAGCTTTT
TATGATGTTACCAGTGGTTGCAACGAAGGCTGTCTTACACACGATAAAGG
TTTCTGTGCTACTGAAGGCTTTGATCCTGTCACTGGGTATGGATCCCCAA
ACTTCCCAGACCTAGTCAAGGCTGCAATGGCTGTTTTCAAACATTGACAT
TAGTTTATCATTTTAAATAACCAATCAATAATGGATGTCTTTTCGTCGAC
CTTTTGAAGTATAGCAATTTTACTtaggatttttaatttttgatatcATC
ACGTAATTGTATAGGTATTTTAGGTTTGTCAAACTAAGGGTTTacatgtt
taaaaatttctattaCTACTCCTCTGTTTTCAAGAAGTTTAtgaccacag
atctgtaaagtccgaagggctagatccgcggcctttatcaaaa Run BLAST on NCBI protein sequence of TCONS_00000391-protein >TCONS_00000391-protein ID=TCONS_00000391-protein|Name=TCONS_00000391-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
FSPYITGVGGTGFSNTLTVGPEFAYEISGGGFSNVFDQPKYQTDAVAAYM
HTEGVPPKDLRNKTGHAYPGIAALCRHFWVVNNRVPVPGVTGTSASTPSV
GGTISMVNEHRLNANKPVMGFLNPFIYKNPQAFYDVTSGCNEGCLTHDKG
FCATEGFDPVTGYGSPNFPDLVKAAMAVFKH Run BLAST on NCBI transcript from alignment at sc0000001:2885359..2886151 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000391 ID=TCONS_00000391|Name=TCONS_00000391|organism=Clytia hemisphaerica|type=transcript|length=793bp|location=Sequence derived from alignment at sc0000001:2885359..2886151 (Clytia hemisphaerica)
ttttgataaaggccgcggatctagcccttcggactttacagatctgtggt
caTAAACTTCTTGAAAACAGAGGAGTAGtaatagaaatttttaaacatgt
AAACCCTTAGTTTGACAAACCTAAAATACCTATACAATTACGTGATgata
tcaaaaattaaaaatcctaAGTAAAATTGCTATACTTCAAAAGGTCGACG
AAAAGACATCCATTATTGATTGGTTATTTAAAATGATAAACTAATGTCAA
TGTTTGAAAACAGCCATTGCAGCCTTGACTAGGTCTGGGAAGTTTGGGGA
TCCATACCCAGTGACAGGATCAAAGCCTTCAGTAGCACAGAAACCTTTAT
CGTGTGTAAGACAGCCTTCGTTGCAACCACTGGTAACATCATAAAAAGCT
TGTGGATTCTTGTAAATAAATGGGTTAAGGAATCCCATGACCGGCTTATT
GGCATTAAGTCGGTGCTCGTTTACCATGCTAATGGTACCGCCGACGGATG
GGGTCGAAGCGGAGGTGCCCGTGACCCCTGGAACTGGCACCCGATTATTG
ACGACCCAGAAATGACGACATAAAGCAGCGATGCCAGGGTAAGCATGACC
TGTTTTGTTGCGGAGATCTTTTGGTGGGACGCCTTCTGTATGCATATAGG
CTGCTACTGCATCTGTTTGATATTTAGGTTGATCGAAAACATTGCTGAAA
CCTCCGCCGCTAATCTCGTAGGCGAATTCAGGGCCAACTGTTAAAGTGTT
TGAGAATCCAGTTCCACCAACTCCAGTAATGTAAGGACTGAAA Coding sequence (CDS) from alignment at sc0000001:2885359..2886151 >TCONS_00000391 ID=TCONS_00000391|Name=TCONS_00000391|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0000001:2885359..2886151 (Clytia hemisphaerica)
TCAATGTTTGAAAACAGCCATTGCAGCCTTGACTAGGTCTGGGAAGTTTG
GGGATCCATACCCAGTGACAGGATCAAAGCCTTCAGTAGCACAGAAACCT
TTATCGTGTGTAAGACAGCCTTCGTTGCAACCACTGGTAACATCATAAAA
AGCTTGTGGATTCTTGTAAATAAATGGGTTAAGGAATCCCATGACCGGCT
TATTGGCATTAAGTCGGTGCTCGTTTACCATGCTAATGGTACCGCCGACG
GATGGGGTCGAAGCGGAGGTGCCCGTGACCCCTGGAACTGGCACCCGATT
ATTGACGACCCAGAAATGACGACATAAAGCAGCGATGCCAGGGTAAGCAT
GACCTGTTTTGTTGCGGAGATCTTTTGGTGGGACGCCTTCTGTATGCATA
TAGGCTGCTACTGCATCTGTTTGATATTTAGGTTGATCGAAAACATTGCT
GAAACCTCCGCCGCTAATCTCGTAGGCGAATTCAGGGCCAACTGTTAAAG
TGTTTGAGAATCCAGTTCCACCAACTCCAGTAATGTAAGGACTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000391-exon-sc0000001-1491911889:2885359..2886151 | TCONS_00000391-exon-sc0000001-1491911889:2885359..2886151 | Clytia hemisphaerica | exon |
| TCONS_00000391-exon-sc0000001-1510915933:2885359..2886151 | TCONS_00000391-exon-sc0000001-1510915933:2885359..2886151 | Clytia hemisphaerica | exon |
| TCONS_00000391-exon-sc0000001-1575043694:2885359..2886151 | TCONS_00000391-exon-sc0000001-1575043694:2885359..2886151 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:2885359..2886151 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004252 | serine-type endopeptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
Blast
BLAST of TCONS_00000391 vs. Swiss-Prot (Human)
Match: TPP1 (Tripeptidyl-peptidase 1 OS=Homo sapiens GN=TPP1 PE=1 SV=2) HSP 1 Score: 175.637 bits (444), Expect = 2.808e-50 Identity = 89/180 (49.44%), Postives = 121/180 (67.22%), Query Frame = 2 Query: 5 SPYITGVGGTGFSNTLTVGPEFAYEISGGGFSNVFDQPKYQTDAVAAYMHTEGVPPKDLR-NKTGHAYPGIAALCRHFWVVNNRVPVPGVTGTSASTPSVGGTISMVNEHRLNANKPVMGFLNPFIYKNPQA-FYDVTSGCNEGCLTHD---KGFCATEGFDPVTGYGSPNFPDLVKAAM 529
SPY+T VGGT F + E ISGGGFSNVF +P YQ +AV ++ + P N +G AYP +AAL +WVV+NRVP+P V+GTSASTP GG +S++NEHR+ + +P +GFLNP +Y+ A +DVT GC+E CL + +GFC+ G+DPVTG+G+PNFP L+K +
Sbjct: 382 SPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRPSYQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPVFGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGPGWDPVTGWGTPNFPALLKTLL 561
The following BLAST results are available for this feature:
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