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TCONS_00000391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000391
Unique NameTCONS_00000391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000391 ID=TCONS_00000391|Name=TCONS_00000391|organism=Clytia hemisphaerica|type=transcript|length=793bp
TTTCAGTCCTTACATTACTGGAGTTGGTGGAACTGGATTCTCAAACACTT
TAACAGTTGGCCCTGAATTCGCCTACGAGATTAGCGGCGGAGGTTTCAGC
AATGTTTTCGATCAACCTAAATATCAAACAGATGCAGTAGCAGCCTATAT
GCATACAGAAGGCGTCCCACCAAAAGATCTCCGCAACAAAACAGGTCATG
CTTACCCTGGCATCGCTGCTTTATGTCGTCATTTCTGGGTCGTCAATAAT
CGGGTGCCAGTTCCAGGGGTCACGGGCACCTCCGCTTCGACCCCATCCGT
CGGCGGTACCATTAGCATGGTAAACGAGCACCGACTTAATGCCAATAAGC
CGGTCATGGGATTCCTTAACCCATTTATTTACAAGAATCCACAAGCTTTT
TATGATGTTACCAGTGGTTGCAACGAAGGCTGTCTTACACACGATAAAGG
TTTCTGTGCTACTGAAGGCTTTGATCCTGTCACTGGGTATGGATCCCCAA
ACTTCCCAGACCTAGTCAAGGCTGCAATGGCTGTTTTCAAACATTGACAT
TAGTTTATCATTTTAAATAACCAATCAATAATGGATGTCTTTTCGTCGAC
CTTTTGAAGTATAGCAATTTTACTtaggatttttaatttttgatatcATC
ACGTAATTGTATAGGTATTTTAGGTTTGTCAAACTAAGGGTTTacatgtt
taaaaatttctattaCTACTCCTCTGTTTTCAAGAAGTTTAtgaccacag
atctgtaaagtccgaagggctagatccgcggcctttatcaaaa
Run BLAST on NCBI

protein sequence of TCONS_00000391-protein

>TCONS_00000391-protein ID=TCONS_00000391-protein|Name=TCONS_00000391-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
FSPYITGVGGTGFSNTLTVGPEFAYEISGGGFSNVFDQPKYQTDAVAAYM
HTEGVPPKDLRNKTGHAYPGIAALCRHFWVVNNRVPVPGVTGTSASTPSV
GGTISMVNEHRLNANKPVMGFLNPFIYKNPQAFYDVTSGCNEGCLTHDKG
FCATEGFDPVTGYGSPNFPDLVKAAMAVFKH
Run BLAST on NCBI

transcript from alignment at sc0000001:2885359..2886151

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000391 ID=TCONS_00000391|Name=TCONS_00000391|organism=Clytia hemisphaerica|type=transcript|length=793bp|location=Sequence derived from alignment at sc0000001:2885359..2886151 (Clytia hemisphaerica)
ttttgataaaggccgcggatctagcccttcggactttacagatctgtggt caTAAACTTCTTGAAAACAGAGGAGTAGtaatagaaatttttaaacatgt AAACCCTTAGTTTGACAAACCTAAAATACCTATACAATTACGTGATgata tcaaaaattaaaaatcctaAGTAAAATTGCTATACTTCAAAAGGTCGACG AAAAGACATCCATTATTGATTGGTTATTTAAAATGATAAACTAATGTCAA TGTTTGAAAACAGCCATTGCAGCCTTGACTAGGTCTGGGAAGTTTGGGGA TCCATACCCAGTGACAGGATCAAAGCCTTCAGTAGCACAGAAACCTTTAT CGTGTGTAAGACAGCCTTCGTTGCAACCACTGGTAACATCATAAAAAGCT TGTGGATTCTTGTAAATAAATGGGTTAAGGAATCCCATGACCGGCTTATT GGCATTAAGTCGGTGCTCGTTTACCATGCTAATGGTACCGCCGACGGATG GGGTCGAAGCGGAGGTGCCCGTGACCCCTGGAACTGGCACCCGATTATTG ACGACCCAGAAATGACGACATAAAGCAGCGATGCCAGGGTAAGCATGACC TGTTTTGTTGCGGAGATCTTTTGGTGGGACGCCTTCTGTATGCATATAGG CTGCTACTGCATCTGTTTGATATTTAGGTTGATCGAAAACATTGCTGAAA CCTCCGCCGCTAATCTCGTAGGCGAATTCAGGGCCAACTGTTAAAGTGTT TGAGAATCCAGTTCCACCAACTCCAGTAATGTAAGGACTGAAA

Coding sequence (CDS) from alignment at sc0000001:2885359..2886151

>TCONS_00000391 ID=TCONS_00000391|Name=TCONS_00000391|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0000001:2885359..2886151 (Clytia hemisphaerica)
TCAATGTTTGAAAACAGCCATTGCAGCCTTGACTAGGTCTGGGAAGTTTG
GGGATCCATACCCAGTGACAGGATCAAAGCCTTCAGTAGCACAGAAACCT
TTATCGTGTGTAAGACAGCCTTCGTTGCAACCACTGGTAACATCATAAAA
AGCTTGTGGATTCTTGTAAATAAATGGGTTAAGGAATCCCATGACCGGCT
TATTGGCATTAAGTCGGTGCTCGTTTACCATGCTAATGGTACCGCCGACG
GATGGGGTCGAAGCGGAGGTGCCCGTGACCCCTGGAACTGGCACCCGATT
ATTGACGACCCAGAAATGACGACATAAAGCAGCGATGCCAGGGTAAGCAT
GACCTGTTTTGTTGCGGAGATCTTTTGGTGGGACGCCTTCTGTATGCATA
TAGGCTGCTACTGCATCTGTTTGATATTTAGGTTGATCGAAAACATTGCT
GAAACCTCCGCCGCTAATCTCGTAGGCGAATTCAGGGCCAACTGTTAAAG
TGTTTGAGAATCCAGTTCCACCAACTCCAGTAATGTAAGGACTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000265XLOC_000265Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000391-proteinTCONS_00000391-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000391-exon-sc0000001-1491911889:2885359..2886151TCONS_00000391-exon-sc0000001-1491911889:2885359..2886151Clytia hemisphaericaexon
TCONS_00000391-exon-sc0000001-1510915933:2885359..2886151TCONS_00000391-exon-sc0000001-1510915933:2885359..2886151Clytia hemisphaericaexon
TCONS_00000391-exon-sc0000001-1575043694:2885359..2886151TCONS_00000391-exon-sc0000001-1575043694:2885359..2886151Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2885359..2886151 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0941577 0.177184 0.0939924 0.102165 0.142072 1.4892 1.68399 9.33791 6.62774 17.0681 12.8208 12.3487 11.9821 40.9015 60.9106 33.3976 23.7734 7.57728 6.96294 21.4565 18.941 48.6603 43.8979 1.534 0.854923 24.5113 34.5767 121.907 86.9929
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000209Peptidase_S8/S53_dom
IPR030400Sedolisin_dom
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
BLAST of TCONS_00000391 vs. Swiss-Prot (Human)
Match: TPP1 (Tripeptidyl-peptidase 1 OS=Homo sapiens GN=TPP1 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.808e-50
Identity = 89/180 (49.44%), Postives = 121/180 (67.22%), Query Frame = 2
Query:    5 SPYITGVGGTGFSNTLTVGPEFAYEISGGGFSNVFDQPKYQTDAVAAYMHTEGVPPKDLR-NKTGHAYPGIAALCRHFWVVNNRVPVPGVTGTSASTPSVGGTISMVNEHRLNANKPVMGFLNPFIYKNPQA-FYDVTSGCNEGCLTHD---KGFCATEGFDPVTGYGSPNFPDLVKAAM 529
            SPY+T VGGT F     +  E    ISGGGFSNVF +P YQ +AV  ++ +    P     N +G AYP +AAL   +WVV+NRVP+P V+GTSASTP  GG +S++NEHR+ + +P +GFLNP +Y+   A  +DVT GC+E CL  +   +GFC+  G+DPVTG+G+PNFP L+K  +
Sbjct:  382 SPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRPSYQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPVFGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGPGWDPVTGWGTPNFPALLKTLL 561          
The following BLAST results are available for this feature:
BLAST of TCONS_00000391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPP12.808e-5049.44Tripeptidyl-peptidase 1 OS=Homo sapiens GN=TPP1 PE... [more]
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