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TCONS_00000388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000388
Unique NameTCONS_00000388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length998

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000388 ID=TCONS_00000388|Name=TCONS_00000388|organism=Clytia hemisphaerica|type=transcript|length=998bp
TGAAAAGGAGAGCAAACTCTATCAATTCAAACCATTCCTGGACAAAAATG
GCATCTTGAGAATCGGCGGTAGACTTAAGAATGCCCATGTCTCATTTGAA
GCAAAACATCAAATTGTTATCCCCAAAGGATATGTTGCATCACTTATTGC
TGAGAAATATCACAAAGAGAATGGTCACAGTGGTGTAAATCAAACCTTAT
CCGAAGTTAGACAGAAATATTGGATATTATGTGGAAGGCAAGTAATCAAA
ACAGTCATCAAAGCGTGCGTGGAATgtcaaagatttaaaaacaaacctGA
GATTCCAATGATGGCTGACTTACCTGACAGTAGAATGCAACTCAACCAAC
CACCATTCACCAACACTGGTGTGGATTTCTTTGGACCAATCCTCGTTAAA
CAAGGTCGCAAACGTCTGAAGCGCTGGGTTTCACTATTTAAATGCATGAC
GGTCCGATGCGTCCATCTTGAAGTTGTAGAAAGTATGGAAACTGACAATT
TTTTAAACGCACTCCAACGCTTCATCAGCCGCAGACAGAAACCAAGGAAG
CTGCTCTCGGATTGTGGCTCAAACTTTAAAGGTGCGGTAAACGAGCTCAA
AGAAGAACTAAGAAAATTGAACCAGCACAAGATTGGGGAATTTTGTTCAC
CCAGGGAGATTGAATGGCAATTCAACCCTCCATCGGCGCCACACATGGGT
GGAGCCTGGGAACGACTAGTTCGAACTGTCAAAACAAGCATGAAATTCAC
CTTGAAGAATCTCATATTAACCGAATTTCAACTTATGACATTCATAACTG
AAGTGGAAAATATCTTGAACAGTCGTCCACTAATTCCAATCAGTGAAGAT
CCTAAAGACTTAGAGGCACTAACACCGAACCACCTGCTAAAAGGATTCAA
CAACGCAGAAGTTCTACTCAATACAGACAAAGATTTGGACATCACAAAAT
GCTATCGCAAACGATGGAAGCACATTCAGATGTGCTTAGAACACTTCT
Run BLAST on NCBI

protein sequence of TCONS_00000388-protein

>TCONS_00000388-protein ID=TCONS_00000388-protein|Name=TCONS_00000388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
EKESKLYQFKPFLDKNGILRIGGRLKNAHVSFEAKHQIVIPKGYVASLIA
EKYHKENGHSGVNQTLSEVRQKYWILCGRQVIKTVIKACVECQRFKNKPE
IPMMADLPDSRMQLNQPPFTNTGVDFFGPILVKQGRKRLKRWVSLFKCMT
VRCVHLEVVESMETDNFLNALQRFISRRQKPRKLLSDCGSNFKGAVNELK
EELRKLNQHKIGEFCSPREIEWQFNPPSAPHMGGAWERLVRTVKTSMKFT
LKNLILTEFQLMTFITEVENILNSRPLIPISEDPKDLEALTPNHLLKGFN
NAEVLLNTDKDLDITKCYRKRWKHIQMCLEHF
Run BLAST on NCBI

transcript from alignment at sc0000001:2852144..2853141

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000388 ID=TCONS_00000388|Name=TCONS_00000388|organism=Clytia hemisphaerica|type=transcript|length=998bp|location=Sequence derived from alignment at sc0000001:2852144..2853141 (Clytia hemisphaerica)
AGAAGTGTTCTAAGCACATCTGAATGTGCTTCCATCGTTTGCGATAGCAT TTTGTGATGTCCAAATCTTTGTCTGTATTGAGTAGAACTTCTGCGTTGTT GAATCCTTTTAGCAGGTGGTTCGGTGTTAGTGCCTCTAAGTCTTTAGGAT CTTCACTGATTGGAATTAGTGGACGACTGTTCAAGATATTTTCCACTTCA GTTATGAATGTCATAAGTTGAAATTCGGTTAATATGAGATTCTTCAAGGT GAATTTCATGCTTGTTTTGACAGTTCGAACTAGTCGTTCCCAGGCTCCAC CCATGTGTGGCGCCGATGGAGGGTTGAATTGCCATTCAATCTCCCTGGGT GAACAAAATTCCCCAATCTTGTGCTGGTTCAATTTTCTTAGTTCTTCTTT GAGCTCGTTTACCGCACCTTTAAAGTTTGAGCCACAATCCGAGAGCAGCT TCCTTGGTTTCTGTCTGCGGCTGATGAAGCGTTGGAGTGCGTTTAAAAAA TTGTCAGTTTCCATACTTTCTACAACTTCAAGATGGACGCATCGGACCGT CATGCATTTAAATAGTGAAACCCAGCGCTTCAGACGTTTGCGACCTTGTT TAACGAGGATTGGTCCAAAGAAATCCACACCAGTGTTGGTGAATGGTGGT TGGTTGAGTTGCATTCTACTGTCAGGTAAGTCAGCCATCATTGGAATCTC aggtttgtttttaaatctttgacATTCCACGCACGCTTTGATGACTGTTT TGATTACTTGCCTTCCACATAATATCCAATATTTCTGTCTAACTTCGGAT AAGGTTTGATTTACACCACTGTGACCATTCTCTTTGTGATATTTCTCAGC AATAAGTGATGCAACATATCCTTTGGGGATAACAATTTGATGTTTTGCTT CAAATGAGACATGGGCATTCTTAAGTCTACCGCCGATTCTCAAGATGCCA TTTTTGTCCAGGAATGGTTTGAATTGATAGAGTTTGCTCTCCTTTTCA

Coding sequence (CDS) from alignment at sc0000001:2852144..2853141

>TCONS_00000388 ID=TCONS_00000388|Name=TCONS_00000388|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0000001:2852144..2853141 (Clytia hemisphaerica)
GAAGTGTTCTAAGCACATCTGAATGTGCTTCCATCGTTTGCGATAGCATT
TTGTGATGTCCAAATCTTTGTCTGTATTGAGTAGAACTTCTGCGTTGTTG
AATCCTTTTAGCAGGTGGTTCGGTGTTAGTGCCTCTAAGTCTTTAGGATC
TTCACTGATTGGAATTAGTGGACGACTGTTCAAGATATTTTCCACTTCAG
TTATGAATGTCATAAGTTGAAATTCGGTTAATATGAGATTCTTCAAGGTG
AATTTCATGCTTGTTTTGACAGTTCGAACTAGTCGTTCCCAGGCTCCACC
CATGTGTGGCGCCGATGGAGGGTTGAATTGCCATTCAATCTCCCTGGGTG
AACAAAATTCCCCAATCTTGTGCTGGTTCAATTTTCTTAGTTCTTCTTTG
AGCTCGTTTACCGCACCTTTAAAGTTTGAGCCACAATCCGAGAGCAGCTT
CCTTGGTTTCTGTCTGCGGCTGATGAAGCGTTGGAGTGCGTTTAAAAAAT
TGTCAGTTTCCATACTTTCTACAACTTCAAGATGGACGCATCGGACCGTC
ATGCATTTAAATAGTGAAACCCAGCGCTTCAGACGTTTGCGACCTTGTTT
AACGAGGATTGGTCCAAAGAAATCCACACCAGTGTTGGTGAATGGTGGTT
GGTTGAGTTGCATTCTACTGTCAGGTAAGTCAGCCATCATTGGAATCTCa
ggtttgtttttaaatctttgacATTCCACGCACGCTTTGATGACTGTTTT
GATTACTTGCCTTCCACATAATATCCAATATTTCTGTCTAACTTCGGATA
AGGTTTGATTTACACCACTGTGACCATTCTCTTTGTGATATTTCTCAGCA
ATAAGTGATGCAACATATCCTTTGGGGATAACAATTTGATGTTTTGCTTC
AAATGAGACATGGGCATTCTTAAGTCTACCGCCGATTCTCAAGATGCCAT
TTTTGTCCAGGAATGGTTTGAATTGATAGAGTTTGCTCTCCTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000262XLOC_000262Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000388-proteinTCONS_00000388-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000388-exon-sc0000001-1491911889:2852144..2853141TCONS_00000388-exon-sc0000001-1491911889:2852144..2853141Clytia hemisphaericaexon
TCONS_00000388-exon-sc0000001-1510915933:2852144..2853141TCONS_00000388-exon-sc0000001-1510915933:2852144..2853141Clytia hemisphaericaexon
TCONS_00000388-exon-sc0000001-1575043694:2852144..2853141TCONS_00000388-exon-sc0000001-1575043694:2852144..2853141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000001supercontigsc0000001:2852144..2853141 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.526601 0.613878 0.114419 0.249048 0.205465 0.239586 0.509137 1.01234 0.265241 1.11547 0.774453 0.719436 0.657912 0.855864 0.399196 0.328808 0.202532 0.38058 0.573591 0.834292 0.434752 0.731635 1.70677 1.49441 2.34533 1.57164 1.01214 1.5833 2.1133 1.81606
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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